Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:02:04 (3508794): wrapper (7.7.26015): starting
11:02:04 (3508794): wrapper: running run_atlas (--nthreads 4)
[2026-05-02 11:02:04] Arguments: --nthreads 4
[2026-05-02 11:02:04] Threads: 4
[2026-05-02 11:02:04] Checking for CVMFS
[2026-05-02 11:02:04] No cvmfs_config command found, will try listing directly
[2026-05-02 11:02:04] CVMFS is ok
[2026-05-02 11:02:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-02 11:02:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-02 11:02:04] Further information can be found at the LHC@home message board.
[2026-05-02 11:02:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 11:02:04] Checking for apptainer binary...
[2026-05-02 11:02:04] which: no apptainer in ((null))
[2026-05-02 11:02:04] apptainer is not installed, using version from CVMFS
[2026-05-02 11:02:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 11:02:04] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-05-02 11:02:04] apptainer works
[2026-05-02 11:02:04] Set ATHENA_PROC_NUMBER=4
[2026-05-02 11:02:04] Set ATHENA_CORE_NUMBER=4
[2026-05-02 11:02:04] Starting ATLAS job with PandaID=7122342539
[2026-05-02 11:02:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 14:59:28]  *** The last 200 lines of the pilot log: ***
[2026-05-02 14:59:28] 2026-05-02 12:58:03,119 | INFO     | intersect: 2311944.1238938053
[2026-05-02 14:59:28] 2026-05-02 12:58:03,120 | INFO     | chi2: 1.4100033986220846
[2026-05-02 14:59:28] 2026-05-02 12:58:03,120 | INFO     | current chi2=1.4100033986220846 (change=-0.02993793645445348 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,120 | INFO     | right removable region: 225
[2026-05-02 14:59:28] 2026-05-02 12:58:03,120 | INFO     | sum of square deviations: 3579276412.5
[2026-05-02 14:59:28] 2026-05-02 12:58:03,122 | INFO     | sum of deviations: 7005836641.000001
[2026-05-02 14:59:28] 2026-05-02 12:58:03,122 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,122 | INFO     | mean y: 2332508.761061947
[2026-05-02 14:59:28] 2026-05-02 12:58:03,122 | INFO     | intersect: 2332508.761061947
[2026-05-02 14:59:28] 2026-05-02 12:58:03,122 | INFO     | chi2: 0.00497777924258754
[2026-05-02 14:59:28] 2026-05-02 12:58:03,122 | INFO     | current chi2=0.00497777924258754 (change=99.6468611712681 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,123 | INFO     | sum of square deviations: 3346927870.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,124 | INFO     | sum of deviations: 5914051076.999999
[2026-05-02 14:59:28] 2026-05-02 12:58:03,124 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,124 | INFO     | mean y: 2333210.8868778283
[2026-05-02 14:59:28] 2026-05-02 12:58:03,125 | INFO     | intersect: 2333210.8868778283
[2026-05-02 14:59:28] 2026-05-02 12:58:03,125 | INFO     | chi2: 0.0008938325010389208
[2026-05-02 14:59:28] 2026-05-02 12:58:03,125 | INFO     | current chi2=0.0008938325010389208 (change=82.04354878995616 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,125 | INFO     | sum of square deviations: 3124858590.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,127 | INFO     | sum of deviations: 6095617363.5
[2026-05-02 14:59:28] 2026-05-02 12:58:03,127 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,127 | INFO     | mean y: 2333089.8194444445
[2026-05-02 14:59:28] 2026-05-02 12:58:03,127 | INFO     | intersect: 2333089.8194444445
[2026-05-02 14:59:28] 2026-05-02 12:58:03,127 | INFO     | chi2: 0.00034116814658338344
[2026-05-02 14:59:28] 2026-05-02 12:58:03,127 | INFO     | current chi2=0.00034116814658338344 (change=61.83086359168677 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,128 | INFO     | sum of square deviations: 2912836010.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,129 | INFO     | sum of deviations: 5270984624.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,129 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,129 | INFO     | mean y: 2333681.9857819905
[2026-05-02 14:59:28] 2026-05-02 12:58:03,130 | INFO     | intersect: 2333681.9857819905
[2026-05-02 14:59:28] 2026-05-02 12:58:03,130 | INFO     | chi2: 0.0001708276260344413
[2026-05-02 14:59:28] 2026-05-02 12:58:03,130 | INFO     | current chi2=0.0001708276260344413 (change=49.92861210954521 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,130 | INFO     | sum of square deviations: 2710627567.5
[2026-05-02 14:59:28] 2026-05-02 12:58:03,132 | INFO     | sum of deviations: 4695522427.499999
[2026-05-02 14:59:28] 2026-05-02 12:58:03,132 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,132 | INFO     | mean y: 2334115.2669902914
[2026-05-02 14:59:28] 2026-05-02 12:58:03,132 | INFO     | intersect: 2334115.2669902914
[2026-05-02 14:59:28] 2026-05-02 12:58:03,132 | INFO     | chi2: 0.00012130604208553026
[2026-05-02 14:59:28] 2026-05-02 12:58:03,132 | INFO     | current chi2=0.00012130604208553026 (change=28.989212751178066 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,133 | INFO     | sum of square deviations: 2518000700.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,134 | INFO     | sum of deviations: 4294310330.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,134 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,134 | INFO     | mean y: 2334432.417910448
[2026-05-02 14:59:28] 2026-05-02 12:58:03,134 | INFO     | intersect: 2334432.417910448
[2026-05-02 14:59:28] 2026-05-02 12:58:03,135 | INFO     | chi2: 0.0001145086528606775
[2026-05-02 14:59:28] 2026-05-02 12:58:03,135 | INFO     | current chi2=0.0001145086528606775 (change=5.603504250893014 %)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,135 | INFO     | left removable region: 30
[2026-05-02 14:59:28] 2026-05-02 12:58:03,135 | INFO     | sum of square deviations: 2299168690.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,136 | INFO     | sum of deviations: 4026569801.000001
[2026-05-02 14:59:28] 2026-05-02 12:58:03,136 | INFO     | mean x (centered): 0.0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,137 | INFO     | mean y: 2334208.4512820514
[2026-05-02 14:59:28] 2026-05-02 12:58:03,137 | INFO     | intersect: 2334208.4512820514
[2026-05-02 14:59:28] 2026-05-02 12:58:03,137 | INFO     | chi2: 0.00010429715094996093
[2026-05-02 14:59:28] 2026-05-02 12:58:03,137 | INFO     | current memory leak: 1.75 B/s (using 195 data points, chi2=0.00)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,137 | INFO     | could have reported an average CPU frequency of 2682 MHz (11 samples)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | ..............................
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . Timing measurements:
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . get job = 0 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . initial setup = 9 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . payload setup = 20 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . stage-in = 0 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . payload execution = 14093 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . stage-out = 1 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | . log creation = 0 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,141 | INFO     | ..............................
[2026-05-02 14:59:28] 2026-05-02 12:58:03,231 | INFO     | 
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | job summary report
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | --------------------------------------------------
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | PanDA job id: 7122342539
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | task id: 50017022
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | errors: (none)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | pilot state: finished 
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | transexitcode: 0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | exeerrorcode: 0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,232 | INFO     | exeerrordiag: 
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | exitcode: 0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | exitmsg: OK
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | cpuconsumptiontime: 53053 s
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | nevents: 400
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | neventsw: 0
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | pid: 3549154
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | pgrp: 3549154
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | corecount: 4
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | event service: False
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | sizes: {0: 2275470, 1: 2277100, 11: 2277128, 14118: 2308367, 14120: 2317445, 14121: 2317583}
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | --------------------------------------------------
[2026-05-02 14:59:28] 2026-05-02 12:58:03,233 | INFO     | 
[2026-05-02 14:59:28] 2026-05-02 12:58:03,234 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/1
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,265 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,265 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 14:59:28] 2026-05-02 12:58:03,265 | INFO     | job 7122342539 has completed (purged errors)
[2026-05-02 14:59:28] 2026-05-02 12:58:03,265 | INFO     | overall cleanup function is called
[2026-05-02 14:59:28] 2026-05-02 12:58:04,273 | INFO     | --- collectZombieJob: --- 10, [3549154]
[2026-05-02 14:59:28] 2026-05-02 12:58:04,274 | INFO     | zombie collector waiting for pid 3549154
[2026-05-02 14:59:28] 2026-05-02 12:58:04,274 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 14:59:28] 2026-05-02 12:58:04,274 | INFO     | collected zombie processes
[2026-05-02 14:59:28] 2026-05-02 12:58:04,274 | INFO     | will attempt to kill all subprocesses of pid=3549154
[2026-05-02 14:59:28] 2026-05-02 12:58:04,978 | INFO     | process IDs to be killed: [3549154] (in reverse order)
[2026-05-02 14:59:28] 2026-05-02 12:58:05,315 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 14:59:28] 2026-05-02 12:58:05,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 14:59:28] 2026-05-02 12:58:05,349 | INFO     | did not find any defunct processes belonging to 3549154
[2026-05-02 14:59:28] 2026-05-02 12:58:05,378 | INFO     | did not find any defunct processes belonging to 3549154
[2026-05-02 14:59:28] 2026-05-02 12:58:05,378 | INFO     | Ready for new job
[2026-05-02 14:59:28] 2026-05-02 12:58:05,380 | INFO     | ***************************************
[2026-05-02 14:59:28] 2026-05-02 12:58:05,381 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 14:59:28] 2026-05-02 12:58:05,381 | INFO     | ***************************************
[2026-05-02 14:59:28] 2026-05-02 12:58:05,381 | INFO     | 
[2026-05-02 14:59:28] 2026-05-02 12:58:05,389 | INFO     | architecture information:
[2026-05-02 14:59:28] 2026-05-02 12:58:05,390 | INFO     | executing command: cat /etc/os-release
[2026-05-02 14:59:28] 2026-05-02 12:58:05,414 | INFO     | cat /etc/os-release:
[2026-05-02 14:59:28] NAME="CentOS Linux"
[2026-05-02 14:59:28] VERSION="7 (Core)"
[2026-05-02 14:59:28] ID="centos"
[2026-05-02 14:59:28] ID_LIKE="rhel fedora"
[2026-05-02 14:59:28] VERSION_ID="7"
[2026-05-02 14:59:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 14:59:28] ANSI_COLOR="0;31"
[2026-05-02 14:59:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 14:59:28] HOME_URL="https://www.centos.org/"
[2026-05-02 14:59:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 14:59:28] 
[2026-05-02 14:59:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 14:59:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 14:59:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 14:59:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 14:59:28] 
[2026-05-02 14:59:28] 2026-05-02 12:58:05,415 | INFO     | ***************************************
[2026-05-02 14:59:28] 2026-05-02 12:58:05,918 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/1
[2026-05-02 14:59:28] 2026-05-02 12:58:05,942 | INFO     | sufficient remaining disk space (161232191488 B)
[2026-05-02 14:59:28] 2026-05-02 12:58:05,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 14:59:28] 2026-05-02 12:58:05,943 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 14:59:28] 2026-05-02 12:58:05,943 | INFO     | update_server=False
[2026-05-02 14:59:28] 2026-05-02 12:58:05,943 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 14:59:28] 2026-05-02 12:58:05,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 14:59:28] 2026-05-02 12:58:05,943 | INFO     | aborting loop
[2026-05-02 14:59:28] 2026-05-02 12:58:06,218 | INFO     | all data control threads have been joined
[2026-05-02 14:59:28] 2026-05-02 12:58:06,323 | INFO     | all job control threads have been joined
[2026-05-02 14:59:28] 2026-05-02 12:58:06,736 | INFO     | all payload control threads have been joined
[2026-05-02 14:59:28] 2026-05-02 12:58:06,948 | INFO     | [job] retrieve thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:06,949 | INFO     | [job] job monitor thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:07,224 | INFO     | [data] control thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:07,306 | INFO     | [payload] validate_post thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:07,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 14:59:28] 2026-05-02 12:58:07,329 | INFO     | [job] control thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:07,376 | INFO     | [job] validate thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:07,741 | INFO     | [payload] control thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:07,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 14:59:28] 2026-05-02 12:58:08,091 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:08,175 | INFO     | [payload] failed_post thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:08,239 | INFO     | [data] copytool_in thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:08,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 14:59:28] 2026-05-02 12:58:08,307 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:08,407 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:09,246 | INFO     | [job] queue monitor thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:09,314 | INFO     | [data] copytool_out thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:11,905 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:16,960 | INFO     | job.realtimelogging is not enabled
[2026-05-02 14:59:28] 2026-05-02 12:58:17,966 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 14:59:28] 2026-05-02 12:58:35,735 | INFO     | PID=3521967 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 14:59:28] 2026-05-02 12:58:35,735 | INFO     | .. there are 23 such processes running
[2026-05-02 14:59:28] 2026-05-02 12:58:35,736 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 14:59:28] 2026-05-02 12:58:35,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 14:59:28] 2026-05-02 12:58:35,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 14:59:28] 2026-05-02 12:58:53,693 | INFO     | [monitor] cgroup control has ended
[2026-05-02 14:59:28] 2026-05-02 12:58:54,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23161515558720)>', '<ExcThread(monitor, started 23161206716160)>']
[2026-05-02 14:59:28] 2026-05-02 12:58:54,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 14:59:28] 2026-05-02 12:58:54,829 | INFO     | [monitor] control thread has ended
[2026-05-02 14:59:28] 2026-05-02 12:58:59,297 | INFO     | all workflow threads have been joined
[2026-05-02 14:59:28] 2026-05-02 12:58:59,298 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 14:59:28] 2026-05-02 12:58:59,298 | INFO     | traces error code: 0
[2026-05-02 14:59:28] 2026-05-02 12:58:59,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 14:59:28] 2026-05-02 12:58:59,442 [wrapper] ==== pilot stdout END ====
[2026-05-02 14:59:28] 2026-05-02 12:58:59,447 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 14:59:28] 2026-05-02 12:58:59,451 [wrapper] pilotpid: 3521967
[2026-05-02 14:59:28] 2026-05-02 12:58:59,455 [wrapper] Pilot exit status: 0
[2026-05-02 14:59:28] 2026-05-02 12:58:59,472 [wrapper] pandaids: 7122342539
[2026-05-02 14:59:28] 2026-05-02 12:58:59,674 [wrapper] cleanup supervisor_pilot 4021577 3521968
[2026-05-02 14:59:28] 2026-05-02 12:58:59,679 [wrapper] Test setup, not cleaning
[2026-05-02 14:59:28] 2026-05-02 12:58:59,683 [wrapper] apfmon messages muted
[2026-05-02 14:59:28] 2026-05-02 12:58:59,686 [wrapper] ==== wrapper stdout END ====
[2026-05-02 14:59:28] 2026-05-02 12:58:59,690 [wrapper] ==== wrapper stderr END ====
[2026-05-02 14:59:28]  *** Error codes and diagnostics ***
[2026-05-02 14:59:28]     "exeErrorCode": 0,
[2026-05-02 14:59:28]     "pilotErrorCode": 0,
[2026-05-02 14:59:28]  *** Listing of results directory ***
[2026-05-02 14:59:28] total 488944
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc    683926 Apr 30 12:14 pilot3.tar.gz
[2026-05-02 14:59:28] -rwx------. 1 boinc boinc     36322 Apr 30 12:17 runpilot2-wrapper.sh
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc      5631 Apr 30 12:18 queuedata.json
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc       100 May  2 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 14:59:28] -rwxr-xr-x. 1 boinc boinc      7986 May  2 11:01 run_atlas
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc       105 May  2 11:01 job.xml
[2026-05-02 14:59:28] -rw-r--r--. 2 boinc boinc 314025760 May  2 11:02 EVNT.50017015._000012.pool.root.1
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc      6541 May  2 11:02 init_data.xml
[2026-05-02 14:59:28] -rw-r--r--. 2 boinc boinc     15667 May  2 11:02 start_atlas.sh
[2026-05-02 14:59:28] drwxrwx--x. 2 boinc boinc      4096 May  2 11:02 shared
[2026-05-02 14:59:28] -rw-r--r--. 2 boinc boinc    697400 May  2 11:02 input.tar.gz
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc         0 May  2 11:02 boinc_lockfile
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc      2528 May  2 11:02 pandaJob.out
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc   1002968 May  2 11:02 agis_schedconf.cvmfs.json
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc       444 May  2 11:02 workernode_map.json
[2026-05-02 14:59:28] drwx------. 5 boinc boinc      4096 May  2 11:02 pilot3
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc 179232467 May  2 14:57 HITS.50017022._000287.pool.root.1
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc       486 May  2 14:57 boinc_task_state.xml
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc      1028 May  2 14:57 memory_monitor_summary.json
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc   1508687 May  2 14:58 agis_ddmendpoints.agis.ALL.json
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc    338443 May  2 14:58 log.50017022._000287.job.log.tgz.1
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc      6367 May  2 14:58 heartbeat_new.json
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc      6258 May  2 14:58 heartbeat.json
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc        95 May  2 14:58 pilot_heartbeat.json
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc        26 May  2 14:58 wrapper_checkpoint.txt
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc      4906 May  2 14:58 pilotlog.txt
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc   1306040 May  2 14:58 log.50017022._000287.job.log.1
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc       357 May  2 14:58 output.list
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc       410 May  2 14:58 runtime_log
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc   1658880 May  2 14:58 result.tar.gz
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc      8845 May  2 14:58 runtime_log.err
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc       666 May  2 14:58 2c549cbb5f4f.diag
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc      8192 May  2 14:59 boinc_mmap_file
[2026-05-02 14:59:28] -rw-r--r--. 1 boinc boinc     20615 May  2 14:59 stderr.txt
[2026-05-02 14:59:28] HITS file was successfully produced:
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc 179232467 May  2 14:57 shared/HITS.pool.root.1
[2026-05-02 14:59:28]  *** Contents of shared directory: ***
[2026-05-02 14:59:28] total 484028
[2026-05-02 14:59:28] -rw-r--r--. 2 boinc boinc 314025760 May  2 11:02 ATLAS.root_0
[2026-05-02 14:59:28] -rw-r--r--. 2 boinc boinc     15667 May  2 11:02 start_atlas.sh
[2026-05-02 14:59:28] -rw-r--r--. 2 boinc boinc    697400 May  2 11:02 input.tar.gz
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc 179232467 May  2 14:57 HITS.pool.root.1
[2026-05-02 14:59:28] -rw-------. 1 boinc boinc   1658880 May  2 14:58 result.tar.gz
14:59:29 (3508794): run_atlas exited; CPU time 53903.581058
14:59:29 (3508794): called boinc_finish(0)

</stderr_txt>
]]>

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