Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:43:53 (3576223): wrapper (7.7.26015): starting
07:43:53 (3576223): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 07:43:53] Arguments: --nthreads 8
[2026-04-30 07:43:53] Threads: 8
[2026-04-30 07:43:53] Checking for CVMFS
[2026-04-30 07:43:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 07:43:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 07:43:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 07:43:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 07:43:53] 2.13.3.0 4282 173629 530304 159050 2 188 38818912 39288832 3651 16776704 0 92636370 99.628 119063486 36170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-30 07:43:53] CVMFS is ok
[2026-04-30 07:43:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 07:43:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 07:43:53] Further information can be found at the LHC@home message board.
[2026-04-30 07:43:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 07:43:53] Checking for apptainer binary...
[2026-04-30 07:43:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 07:43:53] Running /usr/bin/apptainer --version
[2026-04-30 07:43:53] apptainer version 1.4.5-3.el9
[2026-04-30 07:43:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 07:43:53] c-211-32.aglt2.org
[2026-04-30 07:43:53] apptainer works
[2026-04-30 07:43:53] Set ATHENA_PROC_NUMBER=8
[2026-04-30 07:43:53] Set ATHENA_CORE_NUMBER=8
[2026-04-30 07:43:53] Starting ATLAS job with PandaID=7122342509
[2026-04-30 07:43:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:08:25 (9111): wrapper (7.7.26015): starting
11:08:25 (9111): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 11:08:25] Arguments: --nthreads 8
[2026-04-30 11:08:25] Threads: 8
[2026-04-30 11:08:25] This job has been restarted, cleaning up previous attempt
[2026-04-30 11:08:25] Checking for CVMFS
[2026-04-30 11:08:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 11:08:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 11:08:26] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 11:08:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 11:08:26] 2.13.3.0 8263 0 29476 159054 3 1 39258969 39288832 0 16776704 0 0 100.000 0 n/a http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-30 11:08:26] CVMFS is ok
[2026-04-30 11:08:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 11:08:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 11:08:26] Further information can be found at the LHC@home message board.
[2026-04-30 11:08:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 11:08:26] Checking for apptainer binary...
[2026-04-30 11:08:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 11:08:26] Running /usr/bin/apptainer --version
[2026-04-30 11:08:27] apptainer version 1.4.5-3.el9
[2026-04-30 11:08:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 11:08:28] c-211-32.aglt2.org
[2026-04-30 11:08:28] apptainer works
[2026-04-30 11:08:28] Set ATHENA_PROC_NUMBER=8
[2026-04-30 11:08:28] Set ATHENA_CORE_NUMBER=8
[2026-04-30 11:08:28] Starting ATLAS job with PandaID=7122342509
[2026-04-30 11:08:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 14:52:12]  *** The last 200 lines of the pilot log: ***
[2026-04-30 14:52:12] 2026-04-30 18:51:14,456 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,456 | INFO     | log transfer has been attempted: DONE
[2026-04-30 14:52:12] 2026-04-30 18:51:14,457 | INFO     | job 7122342509 has finished - writing final server update
[2026-04-30 14:52:12] 2026-04-30 18:51:14,457 | INFO     | total number of processed events: 400 (read)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,466 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7122342509/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,467 | INFO     | extracted standard info from prmon json
[2026-04-30 14:52:12] 2026-04-30 18:51:14,467 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 14:52:12] 2026-04-30 18:51:14,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 14:52:12] 2026-04-30 18:51:14,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 14:52:12] 2026-04-30 18:51:14,474 | INFO     | fitting pss+swap vs Time
[2026-04-30 14:52:12] 2026-04-30 18:51:14,475 | INFO     | sum of square deviations: 3256879670.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,476 | INFO     | sum of deviations: 24764055076.000008
[2026-04-30 14:52:12] 2026-04-30 18:51:14,477 | INFO     | mean x (centered): 0.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,477 | INFO     | mean y: 2500059.4246575343
[2026-04-30 14:52:12] 2026-04-30 18:51:14,477 | INFO     | intersect: 2500059.4246575343
[2026-04-30 14:52:12] 2026-04-30 18:51:14,478 | INFO     | chi2: 2.318531692117953
[2026-04-30 14:52:12] 2026-04-30 18:51:14,478 | INFO     | sum of square deviations: 3038856977.5
[2026-04-30 14:52:12] 2026-04-30 18:51:14,480 | INFO     | sum of deviations: 38945738621.5
[2026-04-30 14:52:12] 2026-04-30 18:51:14,480 | INFO     | mean x (centered): 0.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,480 | INFO     | mean y: 2509784.995327103
[2026-04-30 14:52:12] 2026-04-30 18:51:14,480 | INFO     | intersect: 2509784.995327103
[2026-04-30 14:52:12] 2026-04-30 18:51:14,481 | INFO     | chi2: 1.5149735169133192
[2026-04-30 14:52:12] 2026-04-30 18:51:14,481 | INFO     | current chi2=1.5149735169133192 (change=34.65806302913169 %)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,482 | INFO     | sum of square deviations: 2830787960.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,483 | INFO     | sum of deviations: 37936682203.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,484 | INFO     | mean x (centered): 0.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,484 | INFO     | mean y: 2509046.100478469
[2026-04-30 14:52:12] 2026-04-30 18:51:14,484 | INFO     | intersect: 2509046.100478469
[2026-04-30 14:52:12] 2026-04-30 18:51:14,484 | INFO     | chi2: 1.515532132579049
[2026-04-30 14:52:12] 2026-04-30 18:51:14,485 | INFO     | current chi2=1.515532132579049 (change=-0.036872965731304656 %)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,485 | INFO     | right removable region: 208
[2026-04-30 14:52:12] 2026-04-30 18:51:14,485 | INFO     | sum of square deviations: 3038856977.5
[2026-04-30 14:52:12] 2026-04-30 18:51:14,487 | INFO     | sum of deviations: -10569060415.5
[2026-04-30 14:52:12] 2026-04-30 18:51:14,487 | INFO     | mean x (centered): 0.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,487 | INFO     | mean y: 2524536.303738318
[2026-04-30 14:52:12] 2026-04-30 18:51:14,488 | INFO     | intersect: 2524536.303738318
[2026-04-30 14:52:12] 2026-04-30 18:51:14,488 | INFO     | chi2: 0.8263093689820014
[2026-04-30 14:52:12] 2026-04-30 18:51:14,488 | INFO     | current chi2=0.8263093689820014 (change=64.36066102563484 %)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,489 | INFO     | sum of square deviations: 2830787960.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,490 | INFO     | sum of deviations: -9663045868.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,491 | INFO     | mean x (centered): 0.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,491 | INFO     | mean y: 2523866.5454545454
[2026-04-30 14:52:12] 2026-04-30 18:51:14,491 | INFO     | intersect: 2523866.5454545454
[2026-04-30 14:52:12] 2026-04-30 18:51:14,491 | INFO     | chi2: 0.8258221273716592
[2026-04-30 14:52:12] 2026-04-30 18:51:14,492 | INFO     | current chi2=0.8258221273716592 (change=0.058966003367778096 %)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,492 | INFO     | left removable region: 10
[2026-04-30 14:52:12] 2026-04-30 18:51:14,492 | INFO     | sum of square deviations: 2406926989.5
[2026-04-30 14:52:12] 2026-04-30 18:51:14,494 | INFO     | sum of deviations: 4430561485.5
[2026-04-30 14:52:12] 2026-04-30 18:51:14,494 | INFO     | mean x (centered): 0.0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,494 | INFO     | mean y: 2534481.388888889
[2026-04-30 14:52:12] 2026-04-30 18:51:14,494 | INFO     | intersect: 2534481.388888889
[2026-04-30 14:52:12] 2026-04-30 18:51:14,495 | INFO     | chi2: 0.0018845709371131314
[2026-04-30 14:52:12] 2026-04-30 18:51:14,495 | INFO     | current memory leak: 1.84 B/s (using 198 data points, chi2=0.00)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,496 | INFO     | could have reported an average CPU frequency of 2979 MHz (11 samples)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,496 | INFO     | ..............................
[2026-04-30 14:52:12] 2026-04-30 18:51:14,496 | INFO     | . Timing measurements:
[2026-04-30 14:52:12] 2026-04-30 18:51:14,496 | INFO     | . get job = 0 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,497 | INFO     | . initial setup = 2 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,497 | INFO     | . payload setup = 8 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,497 | INFO     | . stage-in = 0 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,497 | INFO     | . payload execution = 13323 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,497 | INFO     | . stage-out = 2 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,497 | INFO     | . log creation = 0 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,498 | INFO     | ..............................
[2026-04-30 14:52:12] 2026-04-30 18:51:14,653 | INFO     | 
[2026-04-30 14:52:12] 2026-04-30 18:51:14,653 | INFO     | job summary report
[2026-04-30 14:52:12] 2026-04-30 18:51:14,653 | INFO     | --------------------------------------------------
[2026-04-30 14:52:12] 2026-04-30 18:51:14,654 | INFO     | PanDA job id: 7122342509
[2026-04-30 14:52:12] 2026-04-30 18:51:14,654 | INFO     | task id: 50017022
[2026-04-30 14:52:12] 2026-04-30 18:51:14,654 | INFO     | errors: (none)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,654 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 14:52:12] 2026-04-30 18:51:14,654 | INFO     | pilot state: finished 
[2026-04-30 14:52:12] 2026-04-30 18:51:14,654 | INFO     | transexitcode: 0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,655 | INFO     | exeerrorcode: 0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,655 | INFO     | exeerrordiag: 
[2026-04-30 14:52:12] 2026-04-30 18:51:14,655 | INFO     | exitcode: 0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,655 | INFO     | exitmsg: OK
[2026-04-30 14:52:12] 2026-04-30 18:51:14,655 | INFO     | cpuconsumptiontime: 101525 s
[2026-04-30 14:52:12] 2026-04-30 18:51:14,655 | INFO     | nevents: 400
[2026-04-30 14:52:12] 2026-04-30 18:51:14,656 | INFO     | neventsw: 0
[2026-04-30 14:52:12] 2026-04-30 18:51:14,656 | INFO     | pid: 40796
[2026-04-30 14:52:12] 2026-04-30 18:51:14,656 | INFO     | pgrp: 40796
[2026-04-30 14:52:12] 2026-04-30 18:51:14,656 | INFO     | corecount: 8
[2026-04-30 14:52:12] 2026-04-30 18:51:14,656 | INFO     | event service: False
[2026-04-30 14:52:12] 2026-04-30 18:51:14,656 | INFO     | sizes: {0: 2275855, 1: 2278341, 12: 2278341, 13335: 2308422, 13337: 2317476, 13338: 2317614}
[2026-04-30 14:52:12] 2026-04-30 18:51:14,657 | INFO     | --------------------------------------------------
[2026-04-30 14:52:12] 2026-04-30 18:51:14,657 | INFO     | 
[2026-04-30 14:52:12] 2026-04-30 18:51:14,657 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-30 14:52:12] 2026-04-30 18:51:14,675 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,676 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,676 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,676 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,679 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,679 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 14:52:12] 2026-04-30 18:51:14,679 | INFO     | job 7122342509 has completed (purged errors)
[2026-04-30 14:52:12] 2026-04-30 18:51:14,680 | INFO     | overall cleanup function is called
[2026-04-30 14:52:12] 2026-04-30 18:51:15,686 | INFO     | --- collectZombieJob: --- 10, [40796]
[2026-04-30 14:52:12] 2026-04-30 18:51:15,686 | INFO     | zombie collector waiting for pid 40796
[2026-04-30 14:52:12] 2026-04-30 18:51:15,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 14:52:12] 2026-04-30 18:51:15,686 | INFO     | collected zombie processes
[2026-04-30 14:52:12] 2026-04-30 18:51:15,687 | INFO     | will attempt to kill all subprocesses of pid=40796
[2026-04-30 14:52:12] 2026-04-30 18:51:15,951 | INFO     | process IDs to be killed: [40796] (in reverse order)
[2026-04-30 14:52:12] 2026-04-30 18:51:16,025 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 14:52:12] 2026-04-30 18:51:16,026 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 14:52:12] 2026-04-30 18:51:16,038 | INFO     | did not find any defunct processes belonging to 40796
[2026-04-30 14:52:12] 2026-04-30 18:51:16,050 | INFO     | did not find any defunct processes belonging to 40796
[2026-04-30 14:52:12] 2026-04-30 18:51:16,050 | INFO     | Ready for new job
[2026-04-30 14:52:12] 2026-04-30 18:51:16,053 | INFO     | ***************************************
[2026-04-30 14:52:12] 2026-04-30 18:51:16,053 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 14:52:12] 2026-04-30 18:51:16,053 | INFO     | ***************************************
[2026-04-30 14:52:12] 2026-04-30 18:51:16,053 | INFO     | 
[2026-04-30 14:52:12] 2026-04-30 18:51:16,055 | INFO     | architecture information:
[2026-04-30 14:52:12] 2026-04-30 18:51:16,056 | INFO     | executing command: cat /etc/os-release
[2026-04-30 14:52:12] 2026-04-30 18:51:16,070 | INFO     | cat /etc/os-release:
[2026-04-30 14:52:12] NAME="CentOS Linux"
[2026-04-30 14:52:12] VERSION="7 (Core)"
[2026-04-30 14:52:12] ID="centos"
[2026-04-30 14:52:12] ID_LIKE="rhel fedora"
[2026-04-30 14:52:12] VERSION_ID="7"
[2026-04-30 14:52:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 14:52:12] ANSI_COLOR="0;31"
[2026-04-30 14:52:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 14:52:12] HOME_URL="https://www.centos.org/"
[2026-04-30 14:52:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 14:52:12] 
[2026-04-30 14:52:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 14:52:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 14:52:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 14:52:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 14:52:12] 
[2026-04-30 14:52:12] 2026-04-30 18:51:16,071 | INFO     | ***************************************
[2026-04-30 14:52:12] 2026-04-30 18:51:16,575 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-30 14:52:12] 2026-04-30 18:51:16,589 | INFO     | sufficient remaining disk space (50335842304 B)
[2026-04-30 14:52:12] 2026-04-30 18:51:16,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 14:52:12] 2026-04-30 18:51:16,589 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 14:52:12] 2026-04-30 18:51:16,590 | INFO     | update_server=False
[2026-04-30 14:52:12] 2026-04-30 18:51:16,590 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 14:52:12] 2026-04-30 18:51:16,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 14:52:12] 2026-04-30 18:51:16,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 14:52:12] 2026-04-30 18:51:16,822 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-30 14:52:12] 2026-04-30 18:51:16,823 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-30 14:52:12] 2026-04-30 18:51:16,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 14:52:12] 2026-04-30 18:51:16,823 | INFO     | will abort loop
[2026-04-30 14:52:12] 2026-04-30 18:51:16,915 | INFO     | all payload control threads have been joined
[2026-04-30 14:52:12] 2026-04-30 18:51:17,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 14:52:12] 2026-04-30 18:51:17,357 | INFO     | all data control threads have been joined
[2026-04-30 14:52:12] 2026-04-30 18:51:17,357 | INFO     | all job control threads have been joined
[2026-04-30 14:52:12] 2026-04-30 18:51:17,595 | INFO     | [job] retrieve thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:17,596 | INFO     | [job] queue monitor thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:17,699 | INFO     | [payload] validate_post thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:17,828 | INFO     | [job] job monitor thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:17,918 | INFO     | [payload] failed_post thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:17,920 | INFO     | [payload] control thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,263 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,362 | INFO     | [data] control thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,363 | INFO     | [job] control thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,694 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,933 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,983 | INFO     | [data] copytool_in thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:18,995 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:19,045 | INFO     | [data] copytool_out thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:19,095 | INFO     | [job] validate thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:20,598 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 14:52:12] 2026-04-30 18:51:46,701 | INFO     | PID=28626 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-30 14:52:12] 2026-04-30 18:51:46,701 | INFO     | .. there are 7 such processes running
[2026-04-30 14:52:12] 2026-04-30 18:51:46,703 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 14:52:12] 2026-04-30 18:51:46,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 14:52:12] 2026-04-30 18:51:46,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 14:52:12] 2026-04-30 18:52:06,950 | INFO     | [monitor] cgroup control has ended
[2026-04-30 14:52:12] 2026-04-30 18:52:06,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723898263360)>', '<ExcThread(monitor, started 139723553085184)>']
[2026-04-30 14:52:12] 2026-04-30 18:52:07,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 14:52:12] 2026-04-30 18:52:07,822 | INFO     | [monitor] control thread has ended
[2026-04-30 14:52:12] 2026-04-30 18:52:11,978 | INFO     | all workflow threads have been joined
[2026-04-30 14:52:12] 2026-04-30 18:52:11,979 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 14:52:12] 2026-04-30 18:52:11,979 | INFO     | traces error code: 0
[2026-04-30 14:52:12] 2026-04-30 18:52:11,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 14:52:12] 2026-04-30 18:52:12,293 [wrapper] ==== pilot stdout END ====
[2026-04-30 14:52:12] 2026-04-30 18:52:12,317 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 14:52:12] 2026-04-30 18:52:12,334 [wrapper] pilotpid: 28626
[2026-04-30 14:52:12] 2026-04-30 18:52:12,356 [wrapper] Pilot exit status: 0
[2026-04-30 14:52:12] 2026-04-30 18:52:12,392 [wrapper] pandaids: 7122342509 7122342509
[2026-04-30 14:52:12] 2026-04-30 18:52:12,449 [wrapper] cleanup supervisor_pilot  345596 28630
[2026-04-30 14:52:12] 2026-04-30 18:52:12,453 [wrapper] Test setup, not cleaning
[2026-04-30 14:52:12] 2026-04-30 18:52:12,456 [wrapper] apfmon messages muted
[2026-04-30 14:52:12] 2026-04-30 18:52:12,459 [wrapper] ==== wrapper stdout END ====
[2026-04-30 14:52:12] 2026-04-30 18:52:12,463 [wrapper] ==== wrapper stderr END ====
[2026-04-30 14:52:12]  *** Error codes and diagnostics ***
[2026-04-30 14:52:12]     "exeErrorCode": 0,
[2026-04-30 14:52:12]     "pilotErrorCode": 0,
[2026-04-30 14:52:12]  *** Listing of results directory ***
[2026-04-30 14:52:12] total 795540
[2026-04-30 14:52:12] drwx------. 5 boincer umatlas      4096 Apr 22 05:13 pilot3
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas    683926 Apr 30 06:14 pilot3.tar.gz
[2026-04-30 14:52:12] -rwx------. 1 boincer umatlas     36322 Apr 30 06:17 runpilot2-wrapper.sh
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas      5631 Apr 30 06:18 queuedata.json
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas       100 Apr 30 07:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 14:52:12] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 30 07:43 run_atlas
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas       105 Apr 30 07:43 job.xml
[2026-04-30 14:52:12] -rw-r--r--. 3 boincer umatlas 315883471 Apr 30 07:43 EVNT.50017015._000011.pool.root.1
[2026-04-30 14:52:12] -rw-r--r--. 3 boincer umatlas 315883471 Apr 30 07:43 ATLAS.root_0
[2026-04-30 14:52:12] -rw-r--r--. 2 boincer umatlas     15667 Apr 30 07:43 start_atlas.sh
[2026-04-30 14:52:12] drwxrwx--x. 2 boincer umatlas      4096 Apr 30 07:43 shared
[2026-04-30 14:52:12] -rw-r--r--. 2 boincer umatlas    697399 Apr 30 07:43 input.tar.gz
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas         0 Apr 30 07:43 boinc_lockfile
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas      2528 Apr 30 11:08 pandaJob.out
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas        57 Apr 30 11:08 setup.sh.local
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas    993382 Apr 30 11:08 agis_schedconf.cvmfs.json
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas       442 Apr 30 11:08 workernode_map.json
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas      6440 Apr 30 14:45 init_data.xml
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas 175497902 Apr 30 14:50 HITS.50017022._000257.pool.root.1
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas       491 Apr 30 14:50 boinc_task_state.xml
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas      1050 Apr 30 14:51 memory_monitor_summary.json
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas   1510091 Apr 30 14:51 agis_ddmendpoints.agis.ALL.json
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas    385288 Apr 30 14:51 log.50017022._000257.job.log.tgz.1
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas      6420 Apr 30 14:51 heartbeat_new.json
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas      6311 Apr 30 14:51 heartbeat.json
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas        96 Apr 30 14:51 pilot_heartbeat.json
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas      8192 Apr 30 14:52 boinc_mmap_file
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas        29 Apr 30 14:52 wrapper_checkpoint.txt
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas      5006 Apr 30 14:52 pilotlog.txt
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas   1229094 Apr 30 14:52 log.50017022._000257.job.log.1
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas       357 Apr 30 14:52 output.list
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas       410 Apr 30 14:52 runtime_log
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas   1628160 Apr 30 14:52 result.tar.gz
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas      9050 Apr 30 14:52 runtime_log.err
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas       786 Apr 30 14:52 2c543f999e3a.diag
[2026-04-30 14:52:12] -rw-r--r--. 1 boincer umatlas     23083 Apr 30 14:52 stderr.txt
[2026-04-30 14:52:12] HITS file was successfully produced:
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas 175497902 Apr 30 14:50 shared/HITS.pool.root.1
[2026-04-30 14:52:12]  *** Contents of shared directory: ***
[2026-04-30 14:52:12] total 482168
[2026-04-30 14:52:12] -rw-r--r--. 3 boincer umatlas 315883471 Apr 30 07:43 ATLAS.root_0
[2026-04-30 14:52:12] -rw-r--r--. 2 boincer umatlas     15667 Apr 30 07:43 start_atlas.sh
[2026-04-30 14:52:12] -rw-r--r--. 2 boincer umatlas    697399 Apr 30 07:43 input.tar.gz
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas 175497902 Apr 30 14:50 HITS.pool.root.1
[2026-04-30 14:52:12] -rw-------. 1 boincer umatlas   1628160 Apr 30 14:52 result.tar.gz
14:52:13 (9111): run_atlas exited; CPU time 101978.396144
14:52:13 (9111): called boinc_finish(0)

</stderr_txt>
]]>

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