Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:31:57 (750219): wrapper (7.7.26015): starting
13:31:57 (750219): wrapper: running run_atlas (--nthreads 4)
[2026-04-30 13:31:57] Arguments: --nthreads 4
[2026-04-30 13:31:57] Threads: 4
[2026-04-30 13:31:57] Checking for CVMFS
[2026-04-30 13:31:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 13:31:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 13:31:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 13:31:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 13:31:57] 2.9.2.0 721334 161 55208 159047 2 50 32513183 36864000 0 130560 0 109813 99.982 6805 21810 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-30 13:31:57] CVMFS is ok
[2026-04-30 13:31:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 13:31:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 13:31:57] Further information can be found at the LHC@home message board.
[2026-04-30 13:31:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 13:31:57] Checking for apptainer binary...
[2026-04-30 13:31:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 13:31:57] Running /usr/bin/apptainer --version
[2026-04-30 13:31:57] apptainer version 1.4.1-1.1
[2026-04-30 13:31:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 13:31:58] thA315a
[2026-04-30 13:31:58] apptainer works
[2026-04-30 13:31:58] Set ATHENA_PROC_NUMBER=4
[2026-04-30 13:31:58] Set ATHENA_CORE_NUMBER=4
[2026-04-30 13:31:58] Starting ATLAS job with PandaID=7117718616
[2026-04-30 13:31:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 14:47:21]  *** The last 200 lines of the pilot log: ***
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | job 7117718616 has completed (purged errors)
[2026-04-30 14:47:21] 2026-04-30 12:46:23,123 | INFO     | overall cleanup function is called
[2026-04-30 14:47:21] 2026-04-30 12:46:24,130 | INFO     | --- collectZombieJob: --- 10, [758845]
[2026-04-30 14:47:21] 2026-04-30 12:46:24,130 | INFO     | zombie collector waiting for pid 758845
[2026-04-30 14:47:21] 2026-04-30 12:46:24,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 14:47:21] 2026-04-30 12:46:24,130 | INFO     | collected zombie processes
[2026-04-30 14:47:21] 2026-04-30 12:46:24,130 | INFO     | will attempt to kill all subprocesses of pid=758845
[2026-04-30 14:47:21] 2026-04-30 12:46:24,163 | INFO     | process IDs to be killed: [758845] (in reverse order)
[2026-04-30 14:47:21] 2026-04-30 12:46:24,196 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 14:47:21] 2026-04-30 12:46:24,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 14:47:21] 2026-04-30 12:46:24,198 | INFO     | did not find any defunct processes belonging to 758845
[2026-04-30 14:47:21] 2026-04-30 12:46:24,199 | INFO     | did not find any defunct processes belonging to 758845
[2026-04-30 14:47:21] 2026-04-30 12:46:24,199 | INFO     | Ready for new job
[2026-04-30 14:47:21] 2026-04-30 12:46:24,200 | INFO     | ***************************************
[2026-04-30 14:47:21] 2026-04-30 12:46:24,200 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 14:47:21] 2026-04-30 12:46:24,200 | INFO     | ***************************************
[2026-04-30 14:47:21] 2026-04-30 12:46:24,200 | INFO     | 
[2026-04-30 14:47:21] 2026-04-30 12:46:24,201 | INFO     | architecture information:
[2026-04-30 14:47:21] 2026-04-30 12:46:24,201 | INFO     | executing command: cat /etc/os-release
[2026-04-30 14:47:21] 2026-04-30 12:46:24,214 | INFO     | cat /etc/os-release:
[2026-04-30 14:47:21] NAME="CentOS Linux"
[2026-04-30 14:47:21] VERSION="7 (Core)"
[2026-04-30 14:47:21] ID="centos"
[2026-04-30 14:47:21] ID_LIKE="rhel fedora"
[2026-04-30 14:47:21] VERSION_ID="7"
[2026-04-30 14:47:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 14:47:21] ANSI_COLOR="0;31"
[2026-04-30 14:47:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 14:47:21] HOME_URL="https://www.centos.org/"
[2026-04-30 14:47:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 14:47:21] 
[2026-04-30 14:47:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 14:47:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 14:47:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 14:47:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 14:47:21] 
[2026-04-30 14:47:21] 2026-04-30 12:46:24,215 | INFO     | ***************************************
[2026-04-30 14:47:21] 2026-04-30 12:46:24,718 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | INFO     | sufficient remaining disk space (227060744192 B)
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | INFO     | update_server=False
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | INFO     | aborting loop
[2026-04-30 14:47:21] 2026-04-30 12:46:24,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 14:47:21] 2026-04-30 12:46:24,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 14:47:21] 2026-04-30 12:46:25,282 | INFO     | all data control threads have been joined
[2026-04-30 14:47:21] 2026-04-30 12:46:25,341 | INFO     | all payload control threads have been joined
[2026-04-30 14:47:21] 2026-04-30 12:46:25,740 | INFO     | [job] job monitor thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:25,740 | INFO     | [job] retrieve thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:25,740 | INFO     | [job] queue monitor thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:25,803 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:25,824 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:25,854 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:25,918 | INFO     | job.realtimelogging is not enabled
[2026-04-30 14:47:21] 2026-04-30 12:46:26,045 | INFO     | [data] copytool_in thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:26,136 | INFO     | [payload] validate_post thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:26,288 | INFO     | [data] control thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:26,296 | INFO     | all job control threads have been joined
[2026-04-30 14:47:21] 2026-04-30 12:46:26,347 | INFO     | [payload] control thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:26,527 | INFO     | [payload] failed_post thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:26,924 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:26,980 | INFO     | [data] copytool_out thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:27,211 | INFO     | [job] validate thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:27,302 | INFO     | [job] control thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:28,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 14:47:21] 2026-04-30 12:46:32,014 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 14:47:21] 2026-04-30 12:46:54,948 | INFO     | PID=754334 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-30 14:47:21] 2026-04-30 12:46:54,948 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 14:47:21] 2026-04-30 12:46:54,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 14:47:21] 2026-04-30 12:46:54,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 14:47:21] 2026-04-30 12:47:05,713 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-04-30 14:47:21] 2026-04-30 12:47:16,378 | INFO     | [monitor] cgroup control has ended
[2026-04-30 14:47:21] 2026-04-30 12:47:16,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140263021926208)>', '<ExcThread(monitor, started 140262022051584)>']
[2026-04-30 14:47:21] 2026-04-30 12:47:17,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 14:47:21] 2026-04-30 12:47:17,066 | INFO     | [monitor] control thread has ended
[2026-04-30 14:47:21] 2026-04-30 12:47:21,758 | INFO     | all workflow threads have been joined
[2026-04-30 14:47:21] 2026-04-30 12:47:21,759 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 14:47:21] 2026-04-30 12:47:21,759 | INFO     | traces error code: 0
[2026-04-30 14:47:21] 2026-04-30 12:47:21,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 14:47:21] 2026-04-30 12:47:21,827 [wrapper] ==== pilot stdout END ====
[2026-04-30 14:47:21] 2026-04-30 12:47:21,831 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 14:47:21] 2026-04-30 12:47:21,835 [wrapper] pilotpid: 754334
[2026-04-30 14:47:21] 2026-04-30 12:47:21,839 [wrapper] Pilot exit status: 0
[2026-04-30 14:47:21] 2026-04-30 12:47:21,850 [wrapper] pandaids: 7117718616
[2026-04-30 14:47:21] 2026-04-30 12:47:21,871 [wrapper] cleanup supervisor_pilot  764232 754335
[2026-04-30 14:47:21] 2026-04-30 12:47:21,875 [wrapper] Test setup, not cleaning
[2026-04-30 14:47:21] 2026-04-30 12:47:21,878 [wrapper] apfmon messages muted
[2026-04-30 14:47:21] 2026-04-30 12:47:21,882 [wrapper] ==== wrapper stdout END ====
[2026-04-30 14:47:21] 2026-04-30 12:47:21,886 [wrapper] ==== wrapper stderr END ====
[2026-04-30 14:47:21]  *** Error codes and diagnostics ***
[2026-04-30 14:47:21]     "exeErrorCode": 0,
[2026-04-30 14:47:21]     "pilotErrorCode": 0,
[2026-04-30 14:47:21]  *** Listing of results directory ***
[2026-04-30 14:47:21] total 412456
[2026-04-30 14:47:21] -rwx------ 1 boinc boinc     36322 Apr 30 09:53 runpilot2-wrapper.sh
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc      5631 Apr 30 10:22 queuedata.json
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc    683926 Apr 30 10:22 pilot3.tar.gz
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc       100 Apr 30 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 14:47:21] -rwxr-xr-x 1 boinc boinc      7986 Apr 30 13:31 run_atlas
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc       105 Apr 30 13:31 job.xml
[2026-04-30 14:47:21] -rw-r--r-- 2 boinc boinc 222581452 Apr 30 13:31 EVNT.49263189._001218.pool.root.1
[2026-04-30 14:47:21] -rw-r--r-- 2 boinc boinc    697428 Apr 30 13:31 input.tar.gz
[2026-04-30 14:47:21] -rw-r--r-- 2 boinc boinc     15667 Apr 30 13:31 start_atlas.sh
[2026-04-30 14:47:21] drwxrwx--x 2 boinc boinc      4096 Apr 30 13:31 shared
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc         0 Apr 30 13:31 boinc_setup_complete
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc      6286 Apr 30 13:31 init_data.xml
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc         0 Apr 30 13:31 boinc_lockfile
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc      2576 Apr 30 13:31 pandaJob.out
[2026-04-30 14:47:21] -rw------- 1 boinc boinc    991987 Apr 30 13:32 agis_schedconf.cvmfs.json
[2026-04-30 14:47:21] -rw------- 1 boinc boinc   1510841 Apr 30 13:32 agis_ddmendpoints.agis.ALL.json
[2026-04-30 14:47:21] -rw------- 1 boinc boinc       422 Apr 30 13:32 workernode_map.json
[2026-04-30 14:47:21] drwx------ 5 boinc boinc      4096 Apr 30 13:32 pilot3
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc       487 Apr 30 14:45 boinc_task_state.xml
[2026-04-30 14:47:21] -rw------- 1 boinc boinc 194262364 Apr 30 14:46 HITS.49263191._081545.pool.root.1
[2026-04-30 14:47:21] -rw------- 1 boinc boinc      1021 Apr 30 14:46 memory_monitor_summary.json
[2026-04-30 14:47:21] -rw------- 1 boinc boinc    253171 Apr 30 14:46 log.49263191._081545.job.log.tgz.1
[2026-04-30 14:47:21] -rw------- 1 boinc boinc      6332 Apr 30 14:46 heartbeat_new.json
[2026-04-30 14:47:21] -rw------- 1 boinc boinc      6223 Apr 30 14:46 heartbeat.json
[2026-04-30 14:47:21] -rw------- 1 boinc boinc        95 Apr 30 14:46 pilot_heartbeat.json
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc      8192 Apr 30 14:46 boinc_mmap_file
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc        27 Apr 30 14:46 wrapper_checkpoint.txt
[2026-04-30 14:47:21] -rw------- 1 boinc boinc      4822 Apr 30 14:47 pilotlog.txt
[2026-04-30 14:47:21] -rw------- 1 boinc boinc    441040 Apr 30 14:47 log.49263191._081545.job.log.1
[2026-04-30 14:47:21] -rw------- 1 boinc boinc       357 Apr 30 14:47 output.list
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc       410 Apr 30 14:47 runtime_log
[2026-04-30 14:47:21] -rw------- 1 boinc boinc    716800 Apr 30 14:47 result.tar.gz
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc      8524 Apr 30 14:47 runtime_log.err
[2026-04-30 14:47:21] -rw------- 1 boinc boinc       658 Apr 30 14:47 0a9152191a6a.diag
[2026-04-30 14:47:21] -rw-r--r-- 1 boinc boinc     12211 Apr 30 14:47 stderr.txt
[2026-04-30 14:47:21] HITS file was successfully produced:
[2026-04-30 14:47:21] -rw------- 1 boinc boinc 194262364 Apr 30 14:46 shared/HITS.pool.root.1
[2026-04-30 14:47:21]  *** Contents of shared directory: ***
[2026-04-30 14:47:21] total 408488
[2026-04-30 14:47:21] -rw-r--r-- 2 boinc boinc 222581452 Apr 30 13:31 ATLAS.root_0
[2026-04-30 14:47:21] -rw-r--r-- 2 boinc boinc    697428 Apr 30 13:31 input.tar.gz
[2026-04-30 14:47:21] -rw-r--r-- 2 boinc boinc     15667 Apr 30 13:31 start_atlas.sh
[2026-04-30 14:47:21] -rw------- 1 boinc boinc 194262364 Apr 30 14:46 HITS.pool.root.1
[2026-04-30 14:47:21] -rw------- 1 boinc boinc    716800 Apr 30 14:47 result.tar.gz
14:47:44 (750219): run_atlas exited; CPU time 15786.607809
14:47:44 (750219): called boinc_finish(0)

</stderr_txt>
]]>

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