Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:33:07 (6355): wrapper (7.7.26015): starting
12:33:07 (6355): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 12:33:07] Arguments: --nthreads 8
[2026-04-30 12:33:07] Threads: 8
[2026-04-30 12:33:07] Checking for CVMFS
[2026-04-30 12:33:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 12:33:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 12:33:11] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 12:33:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 12:33:13] 2.11.2.0 6411 21208 96568 159044 0 11 20035867 25165825 96 130560 0 8546874 99.858 3774433 6293 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-30 12:33:13] CVMFS is ok
[2026-04-30 12:33:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 12:33:13] Checking for apptainer binary...
[2026-04-30 12:33:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 12:33:13] Running /usr/bin/apptainer --version
[2026-04-30 12:33:13] apptainer version 1.3.2-1.el7
[2026-04-30 12:33:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 12:33:23] cg-vwn379.simple-grid.lan
[2026-04-30 12:33:23] apptainer works
[2026-04-30 12:33:23] Set ATHENA_PROC_NUMBER=8
[2026-04-30 12:33:23] Set ATHENA_CORE_NUMBER=8
[2026-04-30 12:33:23] Starting ATLAS job with PandaID=7117719302
[2026-04-30 12:33:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 17:01:13]  *** The last 200 lines of the pilot log: ***
[2026-04-30 17:01:13] 2026-04-30 15:00:04,746 | INFO     | log transfer has been attempted: DONE
[2026-04-30 17:01:13] 2026-04-30 15:00:04,747 | INFO     | job 7117719302 has finished - writing final server update
[2026-04-30 17:01:13] 2026-04-30 15:00:04,747 | INFO     | total number of processed events: 400 (read)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,749 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7117719302/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,750 | INFO     | extracted standard info from prmon json
[2026-04-30 17:01:13] 2026-04-30 15:00:04,750 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 17:01:13] 2026-04-30 15:00:04,750 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 17:01:13] 2026-04-30 15:00:04,750 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 17:01:13] 2026-04-30 15:00:04,756 | INFO     | fitting pss+swap vs Time
[2026-04-30 17:01:13] 2026-04-30 15:00:04,756 | INFO     | sum of square deviations: 4903347750.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,759 | INFO     | sum of deviations: 152321856332.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,759 | INFO     | mean x (centered): 0.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,759 | INFO     | mean y: 2395289.7888446217
[2026-04-30 17:01:13] 2026-04-30 15:00:04,759 | INFO     | intersect: 2395289.7888446217
[2026-04-30 17:01:13] 2026-04-30 15:00:04,760 | INFO     | chi2: 10.226755588804036
[2026-04-30 17:01:13] 2026-04-30 15:00:04,760 | INFO     | sum of square deviations: 4616114457.5
[2026-04-30 17:01:13] 2026-04-30 15:00:04,767 | INFO     | sum of deviations: 182891019169.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,767 | INFO     | mean x (centered): 0.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,767 | INFO     | mean y: 2411301.8699186994
[2026-04-30 17:01:13] 2026-04-30 15:00:04,767 | INFO     | intersect: 2411301.8699186994
[2026-04-30 17:01:13] 2026-04-30 15:00:04,768 | INFO     | chi2: 8.718418706729398
[2026-04-30 17:01:13] 2026-04-30 15:00:04,768 | INFO     | current chi2=8.718418706729398 (change=14.748928621369636 %)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,768 | INFO     | right removable region: 245
[2026-04-30 17:01:13] 2026-04-30 15:00:04,769 | INFO     | sum of square deviations: 4616114457.5
[2026-04-30 17:01:13] 2026-04-30 15:00:04,771 | INFO     | sum of deviations: 63757667778.49999
[2026-04-30 17:01:13] 2026-04-30 15:00:04,771 | INFO     | mean x (centered): 0.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,771 | INFO     | mean y: 2442294.0040650405
[2026-04-30 17:01:13] 2026-04-30 15:00:04,771 | INFO     | intersect: 2442294.0040650405
[2026-04-30 17:01:13] 2026-04-30 15:00:04,772 | INFO     | chi2: 4.927423993000081
[2026-04-30 17:01:13] 2026-04-30 15:00:04,772 | INFO     | current chi2=4.927423993000081 (change=51.818306889093094 %)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,772 | INFO     | sum of square deviations: 4340323240.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,775 | INFO     | sum of deviations: -4549996770.999996
[2026-04-30 17:01:13] 2026-04-30 15:00:04,775 | INFO     | mean x (centered): 0.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,775 | INFO     | mean y: 2480029.622406639
[2026-04-30 17:01:13] 2026-04-30 15:00:04,775 | INFO     | intersect: 2480029.622406639
[2026-04-30 17:01:13] 2026-04-30 15:00:04,776 | INFO     | chi2: 2.041865477347392
[2026-04-30 17:01:13] 2026-04-30 15:00:04,776 | INFO     | current chi2=2.041865477347392 (change=58.56119789471995 %)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,776 | INFO     | sum of square deviations: 4075741535.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,778 | INFO     | sum of deviations: -24282368332.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,778 | INFO     | mean x (centered): 0.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,779 | INFO     | mean y: 2491320.36440678
[2026-04-30 17:01:13] 2026-04-30 15:00:04,779 | INFO     | intersect: 2491320.36440678
[2026-04-30 17:01:13] 2026-04-30 15:00:04,779 | INFO     | chi2: 1.7088084469753118
[2026-04-30 17:01:13] 2026-04-30 15:00:04,779 | INFO     | current chi2=1.7088084469753118 (change=16.311409055446585 %)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,779 | INFO     | left removable region: 15
[2026-04-30 17:01:13] 2026-04-30 15:00:04,780 | INFO     | sum of square deviations: 3772712597.5
[2026-04-30 17:01:13] 2026-04-30 15:00:04,782 | INFO     | sum of deviations: 7869750483.000001
[2026-04-30 17:01:13] 2026-04-30 15:00:04,782 | INFO     | mean x (centered): 0.0
[2026-04-30 17:01:13] 2026-04-30 15:00:04,782 | INFO     | mean y: 2510406.895652174
[2026-04-30 17:01:13] 2026-04-30 15:00:04,782 | INFO     | intersect: 2510406.895652174
[2026-04-30 17:01:13] 2026-04-30 15:00:04,783 | INFO     | chi2: 0.02275595005078603
[2026-04-30 17:01:13] 2026-04-30 15:00:04,783 | INFO     | current memory leak: 2.09 B/s (using 230 data points, chi2=0.02)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | ..............................
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | . Timing measurements:
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | . get job = 0 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | . initial setup = 121 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | . payload setup = 219 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,784 | INFO     | . stage-in = 0 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,785 | INFO     | . payload execution = 15382 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,785 | INFO     | . stage-out = 3 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,785 | INFO     | . log creation = 1 s
[2026-04-30 17:01:13] 2026-04-30 15:00:04,785 | INFO     | ..............................
[2026-04-30 17:01:13] 2026-04-30 15:00:05,423 | INFO     | 
[2026-04-30 17:01:13] 2026-04-30 15:00:05,423 | INFO     | job summary report
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | --------------------------------------------------
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | PanDA job id: 7117719302
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | task id: 49263191
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | errors: (none)
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | pilot state: finished 
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | transexitcode: 0
[2026-04-30 17:01:13] 2026-04-30 15:00:05,424 | INFO     | exeerrorcode: 0
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | exeerrordiag: 
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | exitcode: 0
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | exitmsg: OK
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | cpuconsumptiontime: 57293 s
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | nevents: 400
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | neventsw: 0
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | pid: 14857
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | pgrp: 14857
[2026-04-30 17:01:13] 2026-04-30 15:00:05,425 | INFO     | corecount: 8
[2026-04-30 17:01:13] 2026-04-30 15:00:05,426 | INFO     | event service: False
[2026-04-30 17:01:13] 2026-04-30 15:00:05,426 | INFO     | sizes: {0: 2276475, 1: 2277160, 2: 2278989, 13: 2278989, 15606: 2310262, 15611: 2318710, 15614: 2318894, 15616: 2319088}
[2026-04-30 17:01:13] 2026-04-30 15:00:05,426 | INFO     | --------------------------------------------------
[2026-04-30 17:01:13] 2026-04-30 15:00:05,426 | INFO     | 
[2026-04-30 17:01:13] 2026-04-30 15:00:05,426 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-30 17:01:13] 2026-04-30 15:00:05,913 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,913 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,913 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,913 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | job 7117719302 has completed (purged errors)
[2026-04-30 17:01:13] 2026-04-30 15:00:05,915 | INFO     | overall cleanup function is called
[2026-04-30 17:01:13] 2026-04-30 15:00:06,924 | INFO     | --- collectZombieJob: --- 10, [14857]
[2026-04-30 17:01:13] 2026-04-30 15:00:06,924 | INFO     | zombie collector waiting for pid 14857
[2026-04-30 17:01:13] 2026-04-30 15:00:06,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 17:01:13] 2026-04-30 15:00:06,925 | INFO     | collected zombie processes
[2026-04-30 17:01:13] 2026-04-30 15:00:06,925 | INFO     | will attempt to kill all subprocesses of pid=14857
[2026-04-30 17:01:13] 2026-04-30 15:00:06,988 | INFO     | process IDs to be killed: [14857] (in reverse order)
[2026-04-30 17:01:13] 2026-04-30 15:00:07,721 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 17:01:13] 2026-04-30 15:00:07,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 17:01:13] 2026-04-30 15:00:07,724 | INFO     | did not find any defunct processes belonging to 14857
[2026-04-30 17:01:13] 2026-04-30 15:00:07,725 | INFO     | did not find any defunct processes belonging to 14857
[2026-04-30 17:01:13] 2026-04-30 15:00:07,726 | INFO     | Ready for new job
[2026-04-30 17:01:13] 2026-04-30 15:00:07,727 | INFO     | ***************************************
[2026-04-30 17:01:13] 2026-04-30 15:00:07,728 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 17:01:13] 2026-04-30 15:00:07,728 | INFO     | ***************************************
[2026-04-30 17:01:13] 2026-04-30 15:00:07,728 | INFO     | 
[2026-04-30 17:01:13] 2026-04-30 15:00:07,728 | INFO     | pilot is running in a VM
[2026-04-30 17:01:13] 2026-04-30 15:00:07,729 | INFO     | architecture information:
[2026-04-30 17:01:13] 2026-04-30 15:00:07,735 | INFO     | executing command: cat /etc/os-release
[2026-04-30 17:01:13] 2026-04-30 15:00:08,064 | INFO     | cat /etc/os-release:
[2026-04-30 17:01:13] NAME="CentOS Linux"
[2026-04-30 17:01:13] VERSION="7 (Core)"
[2026-04-30 17:01:13] ID="centos"
[2026-04-30 17:01:13] ID_LIKE="rhel fedora"
[2026-04-30 17:01:13] VERSION_ID="7"
[2026-04-30 17:01:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 17:01:13] ANSI_COLOR="0;31"
[2026-04-30 17:01:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 17:01:13] HOME_URL="https://www.centos.org/"
[2026-04-30 17:01:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 17:01:13] 
[2026-04-30 17:01:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 17:01:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 17:01:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 17:01:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 17:01:13] 
[2026-04-30 17:01:13] 2026-04-30 15:00:08,064 | INFO     | ***************************************
[2026-04-30 17:01:13] 2026-04-30 15:00:08,567 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-30 17:01:13] 2026-04-30 15:00:08,725 | INFO     | sufficient remaining disk space (496124297216 B)
[2026-04-30 17:01:13] 2026-04-30 15:00:08,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 17:01:13] 2026-04-30 15:00:08,725 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 17:01:13] 2026-04-30 15:00:08,725 | INFO     | update_server=False
[2026-04-30 17:01:13] 2026-04-30 15:00:08,726 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 17:01:13] 2026-04-30 15:00:08,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 17:01:13] 2026-04-30 15:00:08,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 17:01:13] 2026-04-30 15:00:09,166 | INFO     | all data control threads have been joined
[2026-04-30 17:01:13] 2026-04-30 15:00:09,220 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-30 17:01:13] 2026-04-30 15:00:09,220 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-30 17:01:13] 2026-04-30 15:00:09,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 17:01:13] 2026-04-30 15:00:09,221 | INFO     | will abort loop
[2026-04-30 17:01:13] 2026-04-30 15:00:09,731 | INFO     | [job] retrieve thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:09,741 | INFO     | [payload] failed_post thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:09,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 17:01:13] 2026-04-30 15:00:09,983 | INFO     | all job control threads have been joined
[2026-04-30 17:01:13] 2026-04-30 15:00:10,172 | INFO     | [data] control thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,217 | INFO     | all payload control threads have been joined
[2026-04-30 17:01:13] 2026-04-30 15:00:10,226 | INFO     | [job] job monitor thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,391 | INFO     | [payload] validate_post thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,450 | INFO     | [job] validate thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,736 | INFO     | [data] copytool_out thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,796 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,964 | INFO     | [job] queue monitor thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:10,989 | INFO     | [job] control thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:11,014 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:11,017 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:11,055 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:11,056 | INFO     | [data] copytool_in thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:11,223 | INFO     | [payload] control thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:12,737 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 17:01:13] 2026-04-30 15:00:37,197 | INFO     | PID=10411 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-30 17:01:13] 2026-04-30 15:00:37,197 | INFO     | .. there are 2 such processes running
[2026-04-30 17:01:13] 2026-04-30 15:00:37,197 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 17:01:13] 2026-04-30 15:00:37,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 17:01:13] 2026-04-30 15:00:37,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 17:01:13] 2026-04-30 15:01:01,792 | INFO     | [monitor] cgroup control has ended
[2026-04-30 17:01:13] 2026-04-30 15:01:03,834 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184063067968)>', '<ExcThread(monitor, started 140183638898432)>']
[2026-04-30 17:01:13] 2026-04-30 15:01:04,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 17:01:13] 2026-04-30 15:01:04,359 | INFO     | [monitor] control thread has ended
[2026-04-30 17:01:13] 2026-04-30 15:01:08,860 | INFO     | all workflow threads have been joined
[2026-04-30 17:01:13] 2026-04-30 15:01:08,861 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 17:01:13] 2026-04-30 15:01:08,861 | INFO     | traces error code: 0
[2026-04-30 17:01:13] 2026-04-30 15:01:08,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 17:01:13] 2026-04-30 15:01:09,251 [wrapper] ==== pilot stdout END ====
[2026-04-30 17:01:13] 2026-04-30 15:01:09,337 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 17:01:13] 2026-04-30 15:01:09,462 [wrapper] pilotpid: 10411
[2026-04-30 17:01:13] 2026-04-30 15:01:09,518 [wrapper] Pilot exit status: 0
[2026-04-30 17:01:13] 2026-04-30 15:01:09,926 [wrapper] pandaids: 7117719302
[2026-04-30 17:01:13] 2026-04-30 15:01:10,716 [wrapper] cleanup supervisor_pilot 21981 10412
[2026-04-30 17:01:13] 2026-04-30 15:01:10,792 [wrapper] Test setup, not cleaning
[2026-04-30 17:01:13] 2026-04-30 15:01:10,867 [wrapper] apfmon messages muted
[2026-04-30 17:01:13] 2026-04-30 15:01:10,965 [wrapper] ==== wrapper stdout END ====
[2026-04-30 17:01:13] 2026-04-30 15:01:11,083 [wrapper] ==== wrapper stderr END ====
[2026-04-30 17:01:13]  *** Error codes and diagnostics ***
[2026-04-30 17:01:13]     "exeErrorCode": 0,
[2026-04-30 17:01:13]     "pilotErrorCode": 0,
[2026-04-30 17:01:13]  *** Listing of results directory ***
[2026-04-30 17:01:13] total 421068
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc      5631 Apr 30 11:28 queuedata.json
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc    683926 Apr 30 11:28 pilot3.tar.gz
[2026-04-30 17:01:13] -rwx------. 1 boinc boinc     36322 Apr 30 11:28 runpilot2-wrapper.sh
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc       100 Apr 30 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 17:01:13] -rwxr-xr-x. 1 boinc boinc      7986 Apr 30 12:33 run_atlas
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc       105 Apr 30 12:33 job.xml
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc      6307 Apr 30 12:33 init_data.xml
[2026-04-30 17:01:13] -rw-r--r--. 2 boinc boinc 225566648 Apr 30 12:33 EVNT.49263189._001308.pool.root.1
[2026-04-30 17:01:13] -rw-r--r--. 2 boinc boinc     15667 Apr 30 12:33 start_atlas.sh
[2026-04-30 17:01:13] drwxrwx--x. 2 boinc boinc        68 Apr 30 12:33 shared
[2026-04-30 17:01:13] -rw-r--r--. 2 boinc boinc    697425 Apr 30 12:33 input.tar.gz
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc         0 Apr 30 12:33 boinc_lockfile
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc      2576 Apr 30 12:33 pandaJob.out
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc       415 Apr 30 12:39 workernode_map.json
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc    993449 Apr 30 12:39 agis_schedconf.cvmfs.json
[2026-04-30 17:01:13] drwx------. 5 boinc boinc      4096 Apr 30 12:39 pilot3
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc 197759534 Apr 30 16:58 HITS.49263191._081768.pool.root.1
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc       488 Apr 30 16:58 boinc_task_state.xml
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc      1013 Apr 30 16:59 memory_monitor_summary.json
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc        95 Apr 30 16:59 pilot_heartbeat.json
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc   1510091 Apr 30 16:59 agis_ddmendpoints.agis.ALL.json
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc    415695 Apr 30 16:59 log.49263191._081768.job.log.tgz.1
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc      6340 Apr 30 17:00 heartbeat_new.json
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc      6231 Apr 30 17:00 heartbeat.json
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc      8192 Apr 30 17:00 boinc_mmap_file
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc        28 Apr 30 17:00 wrapper_checkpoint.txt
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc      5069 Apr 30 17:01 pilotlog.txt
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc   1450341 Apr 30 17:01 log.49263191._081768.job.log.1
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc       357 Apr 30 17:01 output.list
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc       410 Apr 30 17:01 runtime_log
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc   1884160 Apr 30 17:01 result.tar.gz
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc      8439 Apr 30 17:01 runtime_log.err
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc       656 Apr 30 17:01 20ba3757c340.diag
[2026-04-30 17:01:13] -rw-r--r--. 1 boinc boinc     20559 Apr 30 17:01 stderr.txt
[2026-04-30 17:01:13] HITS file was successfully produced:
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc 197759534 Apr 30 16:58 shared/HITS.pool.root.1
[2026-04-30 17:01:13]  *** Contents of shared directory: ***
[2026-04-30 17:01:13] total 415948
[2026-04-30 17:01:13] -rw-r--r--. 2 boinc boinc 225566648 Apr 30 12:33 ATLAS.root_0
[2026-04-30 17:01:13] -rw-r--r--. 2 boinc boinc     15667 Apr 30 12:33 start_atlas.sh
[2026-04-30 17:01:13] -rw-r--r--. 2 boinc boinc    697425 Apr 30 12:33 input.tar.gz
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc 197759534 Apr 30 16:58 HITS.pool.root.1
[2026-04-30 17:01:13] -rw-------. 1 boinc boinc   1884160 Apr 30 17:01 result.tar.gz
17:01:14 (6355): run_atlas exited; CPU time 57446.006372
17:01:14 (6355): called boinc_finish(0)

</stderr_txt>
]]>

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