Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:55:43 (104791): wrapper (7.7.26015): starting
08:55:43 (104791): wrapper: running run_atlas (--nthreads 4)
[2026-05-03 08:55:43] Arguments: --nthreads 4
[2026-05-03 08:55:43] Threads: 4
[2026-05-03 08:55:43] Checking for CVMFS
[2026-05-03 08:55:43] No cvmfs_config command found, will try listing directly
[2026-05-03 08:55:43] CVMFS is ok
[2026-05-03 08:55:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 08:55:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 08:55:43] Further information can be found at the LHC@home message board.
[2026-05-03 08:55:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 08:55:43] Checking for apptainer binary...
[2026-05-03 08:55:43] which: no apptainer in ((null))
[2026-05-03 08:55:43] apptainer is not installed, using version from CVMFS
[2026-05-03 08:55:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 08:55:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-05-03 08:55:44] apptainer works
[2026-05-03 08:55:44] Set ATHENA_PROC_NUMBER=4
[2026-05-03 08:55:44] Set ATHENA_CORE_NUMBER=4
[2026-05-03 08:55:44] Starting ATLAS job with PandaID=7120227440
[2026-05-03 08:55:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 13:11:10]  *** The last 200 lines of the pilot log: ***
[2026-05-03 13:11:10] 2026-05-03 11:06:01,063 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,063 | INFO     | mean y: 2349337.379166667
[2026-05-03 13:11:10] 2026-05-03 11:06:01,063 | INFO     | intersect: 2349337.379166667
[2026-05-03 13:11:10] 2026-05-03 11:06:01,064 | INFO     | chi2: 0.005903541776096748
[2026-05-03 13:11:10] 2026-05-03 11:06:01,064 | INFO     | current chi2=0.005903541776096748 (change=99.60429647400045 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,064 | INFO     | sum of square deviations: 4024149870.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,066 | INFO     | sum of deviations: 3708323956.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,066 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,066 | INFO     | mean y: 2350314.9489361704
[2026-05-03 13:11:10] 2026-05-03 11:06:01,066 | INFO     | intersect: 2350314.9489361704
[2026-05-03 13:11:10] 2026-05-03 11:06:01,067 | INFO     | chi2: 0.0013608899772107471
[2026-05-03 13:11:10] 2026-05-03 11:06:01,067 | INFO     | current chi2=0.0013608899772107471 (change=76.9479063784905 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,067 | INFO     | sum of square deviations: 3772712597.5
[2026-05-03 13:11:10] 2026-05-03 11:06:01,069 | INFO     | sum of deviations: 4161905163.5
[2026-05-03 13:11:10] 2026-05-03 11:06:01,069 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,069 | INFO     | mean y: 2350038.9434782607
[2026-05-03 13:11:10] 2026-05-03 11:06:01,070 | INFO     | intersect: 2350038.9434782607
[2026-05-03 13:11:10] 2026-05-03 11:06:01,070 | INFO     | chi2: 0.000988229495773879
[2026-05-03 13:11:10] 2026-05-03 11:06:01,070 | INFO     | current chi2=0.000988229495773879 (change=27.38358630582802 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,070 | INFO     | sum of square deviations: 3531973200.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,072 | INFO     | sum of deviations: 4281588779.9999995
[2026-05-03 13:11:10] 2026-05-03 11:06:01,072 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,072 | INFO     | mean y: 2349968.68
[2026-05-03 13:11:10] 2026-05-03 11:06:01,072 | INFO     | intersect: 2349968.68
[2026-05-03 13:11:10] 2026-05-03 11:06:01,073 | INFO     | chi2: 0.0002720746448867992
[2026-05-03 13:11:10] 2026-05-03 11:06:01,073 | INFO     | current chi2=0.0002720746448867992 (change=72.4684755868637 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,073 | INFO     | sum of square deviations: 3301699115.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,075 | INFO     | sum of deviations: 3525727501.4999995
[2026-05-03 13:11:10] 2026-05-03 11:06:01,075 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,075 | INFO     | mean y: 2350468.3863636362
[2026-05-03 13:11:10] 2026-05-03 11:06:01,075 | INFO     | intersect: 2350468.3863636362
[2026-05-03 13:11:10] 2026-05-03 11:06:01,076 | INFO     | chi2: 6.427944202008892e-05
[2026-05-03 13:11:10] 2026-05-03 11:06:01,076 | INFO     | current chi2=6.427944202008892e-05 (change=76.37433578316958 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,076 | INFO     | sum of square deviations: 3081657780.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,078 | INFO     | sum of deviations: 3161072703.9999995
[2026-05-03 13:11:10] 2026-05-03 11:06:01,078 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,078 | INFO     | mean y: 2350720.6511627906
[2026-05-03 13:11:10] 2026-05-03 11:06:01,078 | INFO     | intersect: 2350720.6511627906
[2026-05-03 13:11:10] 2026-05-03 11:06:01,078 | INFO     | chi2: 4.6843935862217954e-05
[2026-05-03 13:11:10] 2026-05-03 11:06:01,078 | INFO     | current chi2=4.6843935862217954e-05 (change=27.124544971037455 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,079 | INFO     | sum of square deviations: 2871616632.5
[2026-05-03 13:11:10] 2026-05-03 11:06:01,081 | INFO     | sum of deviations: 2880793106.5
[2026-05-03 13:11:10] 2026-05-03 11:06:01,081 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,081 | INFO     | mean y: 2350923.8333333335
[2026-05-03 13:11:10] 2026-05-03 11:06:01,081 | INFO     | intersect: 2350923.8333333335
[2026-05-03 13:11:10] 2026-05-03 11:06:01,081 | INFO     | chi2: 4.050761754153206e-05
[2026-05-03 13:11:10] 2026-05-03 11:06:01,081 | INFO     | current chi2=4.050761754153206e-05 (change=13.526443079682506 %)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,082 | INFO     | left removable region: 35
[2026-05-03 13:11:10] 2026-05-03 11:06:01,082 | INFO     | sum of square deviations: 2632440055.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,083 | INFO     | sum of deviations: 2630558113.5
[2026-05-03 13:11:10] 2026-05-03 11:06:01,083 | INFO     | mean x (centered): 0.0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,084 | INFO     | mean y: 2350732.318627451
[2026-05-03 13:11:10] 2026-05-03 11:06:01,084 | INFO     | intersect: 2350732.318627451
[2026-05-03 13:11:10] 2026-05-03 11:06:01,084 | INFO     | chi2: 4.0406765378612165e-05
[2026-05-03 13:11:10] 2026-05-03 11:06:01,084 | INFO     | current memory leak: 1.00 B/s (using 204 data points, chi2=0.00)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,085 | INFO     | could have reported an average CPU frequency of 2652 MHz (12 samples)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,085 | INFO     | ..............................
[2026-05-03 13:11:10] 2026-05-03 11:06:01,085 | INFO     | . Timing measurements:
[2026-05-03 13:11:10] 2026-05-03 11:06:01,085 | INFO     | . get job = 0 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,085 | INFO     | . initial setup = 14 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,085 | INFO     | . payload setup = 25 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,086 | INFO     | . stage-in = 0 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,086 | INFO     | . payload execution = 14936 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,086 | INFO     | . stage-out = 1 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,086 | INFO     | . log creation = 0 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,086 | INFO     | ..............................
[2026-05-03 13:11:10] 2026-05-03 11:06:01,185 | INFO     | 
[2026-05-03 13:11:10] 2026-05-03 11:06:01,185 | INFO     | job summary report
[2026-05-03 13:11:10] 2026-05-03 11:06:01,186 | INFO     | --------------------------------------------------
[2026-05-03 13:11:10] 2026-05-03 11:06:01,186 | INFO     | PanDA job id: 7120227440
[2026-05-03 13:11:10] 2026-05-03 11:06:01,186 | INFO     | task id: 49863752
[2026-05-03 13:11:10] 2026-05-03 11:06:01,186 | INFO     | errors: (none)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,186 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 13:11:10] 2026-05-03 11:06:01,186 | INFO     | pilot state: finished 
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | transexitcode: 0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | exeerrorcode: 0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | exeerrordiag: 
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | exitcode: 0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | exitmsg: OK
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | cpuconsumptiontime: 55878 s
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | nevents: 400
[2026-05-03 13:11:10] 2026-05-03 11:06:01,187 | INFO     | neventsw: 0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | pid: 114660
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | pgrp: 114660
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | corecount: 4
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | event service: False
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | sizes: {0: 2275383, 1: 2277212, 14966: 2308696, 14968: 2317718, 14971: 2317774, 14973: 2317968}
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | --------------------------------------------------
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | 
[2026-05-03 13:11:10] 2026-05-03 11:06:01,188 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/0
[2026-05-03 13:11:10] 2026-05-03 11:06:01,220 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,221 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 13:11:10] 2026-05-03 11:06:01,222 | INFO     | job 7120227440 has completed (purged errors)
[2026-05-03 13:11:10] 2026-05-03 11:06:01,223 | INFO     | overall cleanup function is called
[2026-05-03 13:11:10] 2026-05-03 11:06:02,231 | INFO     | --- collectZombieJob: --- 10, [114660]
[2026-05-03 13:11:10] 2026-05-03 11:06:02,232 | INFO     | zombie collector waiting for pid 114660
[2026-05-03 13:11:10] 2026-05-03 11:06:02,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 13:11:10] 2026-05-03 11:06:02,232 | INFO     | collected zombie processes
[2026-05-03 13:11:10] 2026-05-03 11:06:02,232 | INFO     | will attempt to kill all subprocesses of pid=114660
[2026-05-03 13:11:10] 2026-05-03 11:06:02,995 | INFO     | process IDs to be killed: [114660] (in reverse order)
[2026-05-03 13:11:10] 2026-05-03 11:06:03,389 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 13:11:10] 2026-05-03 11:06:03,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 13:11:10] 2026-05-03 11:06:03,426 | INFO     | did not find any defunct processes belonging to 114660
[2026-05-03 13:11:10] 2026-05-03 11:06:03,460 | INFO     | did not find any defunct processes belonging to 114660
[2026-05-03 13:11:10] 2026-05-03 11:06:03,460 | INFO     | Ready for new job
[2026-05-03 13:11:10] 2026-05-03 11:06:03,463 | INFO     | ***************************************
[2026-05-03 13:11:10] 2026-05-03 11:06:03,463 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 13:11:10] 2026-05-03 11:06:03,463 | INFO     | ***************************************
[2026-05-03 13:11:10] 2026-05-03 11:06:03,463 | INFO     | 
[2026-05-03 13:11:10] 2026-05-03 11:06:03,474 | INFO     | architecture information:
[2026-05-03 13:11:10] 2026-05-03 11:06:03,475 | INFO     | executing command: cat /etc/os-release
[2026-05-03 13:11:10] 2026-05-03 11:06:03,499 | INFO     | cat /etc/os-release:
[2026-05-03 13:11:10] NAME="CentOS Linux"
[2026-05-03 13:11:10] VERSION="7 (Core)"
[2026-05-03 13:11:10] ID="centos"
[2026-05-03 13:11:10] ID_LIKE="rhel fedora"
[2026-05-03 13:11:10] VERSION_ID="7"
[2026-05-03 13:11:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 13:11:10] ANSI_COLOR="0;31"
[2026-05-03 13:11:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 13:11:10] HOME_URL="https://www.centos.org/"
[2026-05-03 13:11:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 13:11:10] 
[2026-05-03 13:11:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 13:11:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 13:11:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 13:11:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 13:11:10] 
[2026-05-03 13:11:10] 2026-05-03 11:06:03,499 | INFO     | ***************************************
[2026-05-03 13:11:10] 2026-05-03 11:06:04,002 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/0
[2026-05-03 13:11:10] 2026-05-03 11:06:04,028 | INFO     | sufficient remaining disk space (225031749632 B)
[2026-05-03 13:11:10] 2026-05-03 11:06:04,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 13:11:10] 2026-05-03 11:06:04,028 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 13:11:10] 2026-05-03 11:06:04,028 | INFO     | update_server=False
[2026-05-03 13:11:10] 2026-05-03 11:06:04,029 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 13:11:10] 2026-05-03 11:06:04,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 13:11:10] 2026-05-03 11:06:04,029 | INFO     | aborting loop
[2026-05-03 13:11:10] 2026-05-03 11:06:04,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 13:11:10] 2026-05-03 11:06:04,172 | INFO     | all data control threads have been joined
[2026-05-03 13:11:10] 2026-05-03 11:06:04,486 | INFO     | all payload control threads have been joined
[2026-05-03 13:11:10] 2026-05-03 11:06:04,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 13:11:10] 2026-05-03 11:06:05,033 | INFO     | [job] retrieve thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,034 | INFO     | [job] job monitor thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,073 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,177 | INFO     | [data] control thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,491 | INFO     | [payload] control thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,514 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,517 | INFO     | all job control threads have been joined
[2026-05-03 13:11:10] 2026-05-03 11:06:05,558 | INFO     | [job] validate thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:05,852 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:06,050 | INFO     | [data] copytool_out thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:06,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 13:11:10] 2026-05-03 11:06:06,261 | INFO     | [payload] validate_post thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:06,330 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:06,331 | INFO     | [payload] failed_post thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:06,337 | INFO     | [data] copytool_in thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:06,523 | INFO     | [job] control thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:07,200 | INFO     | [job] queue monitor thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:08,921 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 13:11:10] 2026-05-03 11:06:34,623 | INFO     | PID=109349 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-03 13:11:10] 2026-05-03 11:06:34,623 | INFO     | .. there are 23 such processes running
[2026-05-03 13:11:10] 2026-05-03 11:06:34,625 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 13:11:10] 2026-05-03 11:06:34,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 13:11:10] 2026-05-03 11:06:34,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 13:11:10] 2026-05-03 11:06:51,366 | INFO     | [monitor] cgroup control has ended
[2026-05-03 13:11:10] 2026-05-03 11:06:51,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22434484905792)>', '<ExcThread(monitor, started 22434253395712)>']
[2026-05-03 13:11:10] 2026-05-03 11:06:51,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 13:11:10] 2026-05-03 11:06:51,717 | INFO     | [monitor] control thread has ended
[2026-05-03 13:11:10] 2026-05-03 11:06:56,685 | INFO     | all workflow threads have been joined
[2026-05-03 13:11:10] 2026-05-03 11:06:56,686 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 13:11:10] 2026-05-03 11:06:56,686 | INFO     | traces error code: 0
[2026-05-03 13:11:10] 2026-05-03 11:06:56,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 13:11:10] 2026-05-03 11:06:56,860 [wrapper] ==== pilot stdout END ====
[2026-05-03 13:11:10] 2026-05-03 11:06:56,865 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 13:11:10] 2026-05-03 11:06:56,869 [wrapper] pilotpid: 109349
[2026-05-03 13:11:10] 2026-05-03 11:06:56,873 [wrapper] Pilot exit status: 0
[2026-05-03 13:11:10] 2026-05-03 11:06:56,977 [wrapper] pandaids: 7120227440
[2026-05-03 13:11:10] 2026-05-03 11:06:57,193 [wrapper] cleanup supervisor_pilot  711371 109350
[2026-05-03 13:11:10] 2026-05-03 11:06:57,197 [wrapper] Test setup, not cleaning
[2026-05-03 13:11:10] 2026-05-03 11:06:57,201 [wrapper] apfmon messages muted
[2026-05-03 13:11:10] 2026-05-03 11:06:57,204 [wrapper] ==== wrapper stdout END ====
[2026-05-03 13:11:10] 2026-05-03 11:06:57,211 [wrapper] ==== wrapper stderr END ====
[2026-05-03 13:11:10]  *** Error codes and diagnostics ***
[2026-05-03 13:11:10]     "exeErrorCode": 0,
[2026-05-03 13:11:10]     "pilotErrorCode": 0,
[2026-05-03 13:11:10]  *** Listing of results directory ***
[2026-05-03 13:11:10] total 475220
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc    683926 Apr 30 10:22 pilot3.tar.gz
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc      5631 Apr 30 10:46 queuedata.json
[2026-05-03 13:11:10] -rwx------. 1 boinc boinc     36322 Apr 30 10:46 runpilot2-wrapper.sh
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc       100 May  3 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 13:11:10] -rwxr-xr-x. 1 boinc boinc      7986 May  3 08:55 run_atlas
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc       105 May  3 08:55 job.xml
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc      6540 May  3 08:55 init_data.xml
[2026-05-03 13:11:10] -rw-r--r--. 2 boinc boinc 262186518 May  3 08:55 EVNT.49863749._000193.pool.root.1
[2026-05-03 13:11:10] -rw-r--r--. 2 boinc boinc     15667 May  3 08:55 start_atlas.sh
[2026-05-03 13:11:10] drwxrwx--x. 2 boinc boinc      4096 May  3 08:55 shared
[2026-05-03 13:11:10] -rw-r--r--. 2 boinc boinc    697419 May  3 08:55 input.tar.gz
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc         0 May  3 08:55 boinc_lockfile
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc      2587 May  3 08:55 pandaJob.out
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc   1002964 May  3 08:56 agis_schedconf.cvmfs.json
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc       444 May  3 08:56 workernode_map.json
[2026-05-03 13:11:10] drwx------. 5 boinc boinc      4096 May  3 08:56 pilot3
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc 216852647 May  3 13:05 HITS.49863752._004846.pool.root.1
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc       487 May  3 13:05 boinc_task_state.xml
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc      1029 May  3 13:05 memory_monitor_summary.json
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc   1508687 May  3 13:05 agis_ddmendpoints.agis.ALL.json
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc    345033 May  3 13:05 log.49863752._004846.job.log.tgz.1
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc      6373 May  3 13:06 heartbeat_new.json
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc      6264 May  3 13:06 heartbeat.json
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc        95 May  3 13:06 pilot_heartbeat.json
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc      4834 May  3 13:06 pilotlog.txt
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc   1379256 May  3 13:06 log.49863752._004846.job.log.1
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc       357 May  3 13:06 output.list
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc       410 May  3 13:06 runtime_log
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc   1740800 May  3 13:06 result.tar.gz
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc      8845 May  3 13:06 runtime_log.err
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc       666 May  3 13:06 16f969367ced.diag
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc        27 May  3 13:10 wrapper_checkpoint.txt
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc      8192 May  3 13:11 boinc_mmap_file
[2026-05-03 13:11:10] -rw-r--r--. 1 boinc boinc     20577 May  3 13:11 stderr.txt
[2026-05-03 13:11:10] HITS file was successfully produced:
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc 216852647 May  3 13:05 shared/HITS.pool.root.1
[2026-05-03 13:11:10]  *** Contents of shared directory: ***
[2026-05-03 13:11:10] total 470224
[2026-05-03 13:11:10] -rw-r--r--. 2 boinc boinc 262186518 May  3 08:55 ATLAS.root_0
[2026-05-03 13:11:10] -rw-r--r--. 2 boinc boinc     15667 May  3 08:55 start_atlas.sh
[2026-05-03 13:11:10] -rw-r--r--. 2 boinc boinc    697419 May  3 08:55 input.tar.gz
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc 216852647 May  3 13:05 HITS.pool.root.1
[2026-05-03 13:11:10] -rw-------. 1 boinc boinc   1740800 May  3 13:06 result.tar.gz
13:11:11 (104791): run_atlas exited; CPU time 56797.901801
13:11:11 (104791): called boinc_finish(0)

</stderr_txt>
]]>

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