Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:14:21 (4009636): wrapper (7.7.26015): starting
05:14:21 (4009636): wrapper: running run_atlas (--nthreads 12)
[2026-04-30 05:14:21] Arguments: --nthreads 12
[2026-04-30 05:14:21] Threads: 12
[2026-04-30 05:14:21] Checking for CVMFS
[2026-04-30 05:14:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 05:14:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 05:14:22] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 05:14:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 05:14:22] 2.13.3.0 17575 62894 428896 159041 0 196 17399774 32935937 7046 16776704 0 1000650007 99.791 672048674 38348 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-30 05:14:22] CVMFS is ok
[2026-04-30 05:14:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 05:14:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 05:14:22] Further information can be found at the LHC@home message board.
[2026-04-30 05:14:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 05:14:22] Checking for apptainer binary...
[2026-04-30 05:14:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 05:14:22] Running /usr/bin/apptainer --version
[2026-04-30 05:14:22] apptainer version 1.4.5-3.el9
[2026-04-30 05:14:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 05:14:22] c7-9-14.aglt2.org
[2026-04-30 05:14:22] apptainer works
[2026-04-30 05:14:22] Set ATHENA_PROC_NUMBER=12
[2026-04-30 05:14:22] Set ATHENA_CORE_NUMBER=12
[2026-04-30 05:14:22] Starting ATLAS job with PandaID=7119480808
[2026-04-30 05:14:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 05:41:43]  *** The last 200 lines of the pilot log: ***
[2026-04-30 05:41:43]  ddmendpoint_alt=None
[2026-04-30 05:41:43]  direct_access_lan=False
[2026-04-30 05:41:43]  direct_access_wan=False
[2026-04-30 05:41:43]  domain=
[2026-04-30 05:41:43]  filesize=329355
[2026-04-30 05:41:43]  filetype=log
[2026-04-30 05:41:43]  guid=995fb976-04a1-4c54-916c-62777d85a1a2
[2026-04-30 05:41:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-30 05:41:43]  is_altstaged=None
[2026-04-30 05:41:43]  is_tar=False
[2026-04-30 05:41:43]  lfn=log.49888781._000260.job.log.tgz.1
[2026-04-30 05:41:43]  mtime=0
[2026-04-30 05:41:43]  protocol_id=None
[2026-04-30 05:41:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-30 05:41:43]  replicas=None
[2026-04-30 05:41:43]  scope=mc23_13p6TeV
[2026-04-30 05:41:43]  status=None
[2026-04-30 05:41:43]  status_code=0
[2026-04-30 05:41:43]  storage_token=
[2026-04-30 05:41:43]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-7119480808/log.49888781._000260.job.log.tgz.1
[2026-04-30 05:41:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/9d/log.49888781._000260.job.log.tgz.1
[2026-04-30 05:41:43]  workdir=None
[2026-04-30 05:41:43] ]
[2026-04-30 05:41:43] 2026-04-30 09:40:53,623 | INFO     | transferring file log.49888781._000260.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-7119480808/log.49888781._000260.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-04-30 05:41:43] 2026-04-30 09:40:53,623 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-7119480808/log.49888781._000260.job.log.tgz.1 /tmp/boinchome/slots/6/log.49888781._000260.job
[2026-04-30 05:41:43] 2026-04-30 09:40:53,640 | INFO     | adding to output.list: log.49888781._000260.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/9d/log.49888781._000260.job.log.tg
[2026-04-30 05:41:43] 2026-04-30 09:40:53,641 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-30 05:41:43] 2026-04-30 09:40:53,641 | INFO     | summary of transferred files:
[2026-04-30 05:41:43] 2026-04-30 09:40:53,641 | INFO     |  -- lfn=log.49888781._000260.job.log.tgz.1, status_code=0, status=transferred
[2026-04-30 05:41:43] 2026-04-30 09:40:53,641 | INFO     | stage-out finished correctly
[2026-04-30 05:41:43] 2026-04-30 09:40:53,697 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-30 05:41:43] 2026-04-30 09:40:54,319 | INFO     | monitor loop #123: job 0:7119480808 is in state 'finished'
[2026-04-30 05:41:43] 2026-04-30 09:40:54,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,931 | INFO     | job 7119480808 has state=finished
[2026-04-30 05:41:43] 2026-04-30 09:40:55,932 | INFO     | preparing for final server update for job 7119480808 in state='finished'
[2026-04-30 05:41:43] 2026-04-30 09:40:55,932 | INFO     | reading metadata from: /tmp/boinchome/slots/6/PanDA_Pilot-7119480808/jobReport.json
[2026-04-30 05:41:43] 2026-04-30 09:40:55,934 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/6/workernode_map.json
[2026-04-30 05:41:43] 2026-04-30 09:40:55,934 | INFO     | this job has now completed (state=finished)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,934 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,934 | INFO     | log transfer has been attempted: DONE
[2026-04-30 05:41:43] 2026-04-30 09:40:55,934 | INFO     | job 7119480808 has finished - writing final server update
[2026-04-30 05:41:43] 2026-04-30 09:40:55,934 | INFO     | total number of processed events: 400 (read)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,947 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-7119480808/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,948 | INFO     | extracted standard info from prmon json
[2026-04-30 05:41:43] 2026-04-30 09:40:55,948 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 05:41:43] 2026-04-30 09:40:55,948 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 05:41:43] 2026-04-30 09:40:55,948 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | fitting pss+swap vs Time
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | sum of square deviations: 2120970.0
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | sum of deviations: -64360367.99999999
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | mean x (centered): 0.0
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | mean y: 2683016.947368421
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | intersect: 2683016.947368421
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | chi2: 0.0004138851675622078
[2026-04-30 05:41:43] 2026-04-30 09:40:55,949 | INFO     | current memory leak: -30.34 B/s (using 19 data points, chi2=0.00)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | could have reported an average CPU frequency of 3631 MHz (4 samples)
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | ..............................
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . Timing measurements:
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . get job = 0 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . initial setup = 5 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . payload setup = 6 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . stage-in = 0 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . payload execution = 1555 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . stage-out = 0 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | . log creation = 0 s
[2026-04-30 05:41:43] 2026-04-30 09:40:55,950 | INFO     | ..............................
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | 
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | job summary report
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | --------------------------------------------------
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | PanDA job id: 7119480808
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | task id: 49888781
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | errors: (none)
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | pilot state: finished 
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | transexitcode: 0
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | exeerrorcode: 0
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | exeerrordiag: 
[2026-04-30 05:41:43] 2026-04-30 09:40:56,191 | INFO     | exitcode: 0
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | exitmsg: OK
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | cpuconsumptiontime: 16437 s
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | nevents: 400
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | neventsw: 0
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | pid: 4019148
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | pgrp: 4019148
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | corecount: 12
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | event service: False
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | sizes: {0: 2278946, 11: 2278946, 1565: 2303793, 1567: 2312847, 1569: 2312985}
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | --------------------------------------------------
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | 
[2026-04-30 05:41:43] 2026-04-30 09:40:56,192 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-04-30 05:41:43] 2026-04-30 09:40:56,209 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,209 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,209 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,209 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,209 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | job 7119480808 has completed (purged errors)
[2026-04-30 05:41:43] 2026-04-30 09:40:56,210 | INFO     | overall cleanup function is called
[2026-04-30 05:41:43] 2026-04-30 09:40:57,218 | INFO     | --- collectZombieJob: --- 10, [4019148]
[2026-04-30 05:41:43] 2026-04-30 09:40:57,219 | INFO     | zombie collector waiting for pid 4019148
[2026-04-30 05:41:43] 2026-04-30 09:40:57,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 05:41:43] 2026-04-30 09:40:57,219 | INFO     | collected zombie processes
[2026-04-30 05:41:43] 2026-04-30 09:40:57,219 | INFO     | will attempt to kill all subprocesses of pid=4019148
[2026-04-30 05:41:43] 2026-04-30 09:40:57,470 | INFO     | process IDs to be killed: [4019148] (in reverse order)
[2026-04-30 05:41:43] 2026-04-30 09:40:57,587 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 05:41:43] 2026-04-30 09:40:57,588 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 05:41:43] 2026-04-30 09:40:57,603 | INFO     | did not find any defunct processes belonging to 4019148
[2026-04-30 05:41:43] 2026-04-30 09:40:57,617 | INFO     | did not find any defunct processes belonging to 4019148
[2026-04-30 05:41:43] 2026-04-30 09:40:57,617 | INFO     | Ready for new job
[2026-04-30 05:41:43] 2026-04-30 09:40:57,618 | INFO     | ***************************************
[2026-04-30 05:41:43] 2026-04-30 09:40:57,618 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 05:41:43] 2026-04-30 09:40:57,619 | INFO     | ***************************************
[2026-04-30 05:41:43] 2026-04-30 09:40:57,619 | INFO     | 
[2026-04-30 05:41:43] 2026-04-30 09:40:57,623 | INFO     | architecture information:
[2026-04-30 05:41:43] 2026-04-30 09:40:57,623 | INFO     | executing command: cat /etc/os-release
[2026-04-30 05:41:43] 2026-04-30 09:40:57,636 | INFO     | cat /etc/os-release:
[2026-04-30 05:41:43] NAME="CentOS Linux"
[2026-04-30 05:41:43] VERSION="7 (Core)"
[2026-04-30 05:41:43] ID="centos"
[2026-04-30 05:41:43] ID_LIKE="rhel fedora"
[2026-04-30 05:41:43] VERSION_ID="7"
[2026-04-30 05:41:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 05:41:43] ANSI_COLOR="0;31"
[2026-04-30 05:41:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 05:41:43] HOME_URL="https://www.centos.org/"
[2026-04-30 05:41:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 05:41:43] 
[2026-04-30 05:41:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 05:41:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 05:41:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 05:41:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 05:41:43] 
[2026-04-30 05:41:43] 2026-04-30 09:40:57,637 | INFO     | ***************************************
[2026-04-30 05:41:43] 2026-04-30 09:40:58,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-04-30 05:41:43] 2026-04-30 09:40:58,154 | INFO     | sufficient remaining disk space (68417486848 B)
[2026-04-30 05:41:43] 2026-04-30 09:40:58,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 05:41:43] 2026-04-30 09:40:58,155 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 05:41:43] 2026-04-30 09:40:58,155 | INFO     | update_server=False
[2026-04-30 05:41:43] 2026-04-30 09:40:58,155 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 05:41:43] 2026-04-30 09:40:58,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 05:41:43] 2026-04-30 09:40:58,156 | INFO     | aborting loop
[2026-04-30 05:41:43] 2026-04-30 09:40:58,941 | INFO     | all data control threads have been joined
[2026-04-30 05:41:43] 2026-04-30 09:40:59,161 | INFO     | [job] retrieve thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:40:59,161 | INFO     | [job] job monitor thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:40:59,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 05:41:43] 2026-04-30 09:40:59,231 | INFO     | [data] copytool_in thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:40:59,256 | INFO     | [payload] validate_post thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:40:59,485 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:40:59,515 | INFO     | all payload control threads have been joined
[2026-04-30 05:41:43] 2026-04-30 09:40:59,581 | INFO     | all job control threads have been joined
[2026-04-30 05:41:43] 2026-04-30 09:40:59,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 05:41:43] 2026-04-30 09:40:59,823 | INFO     | [payload] failed_post thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:40:59,947 | INFO     | [data] control thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:00,262 | INFO     | [job] validate thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:00,342 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:00,412 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:00,521 | INFO     | [payload] control thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:00,526 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:00,585 | INFO     | [job] control thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:01,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 05:41:43] 2026-04-30 09:41:01,210 | INFO     | [data] copytool_out thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:02,018 | INFO     | [job] queue monitor thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:03,759 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 05:41:43] 2026-04-30 09:41:27,824 | INFO     | PID=4014018 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-30 05:41:43] 2026-04-30 09:41:27,824 | INFO     | .. there are 11 such processes running
[2026-04-30 05:41:43] 2026-04-30 09:41:27,825 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 05:41:43] 2026-04-30 09:41:27,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 05:41:43] 2026-04-30 09:41:27,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 05:41:43] 2026-04-30 09:41:37,312 | INFO     | [monitor] cgroup control has ended
[2026-04-30 05:41:43] 2026-04-30 09:41:38,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140254845118272)>', '<ExcThread(monitor, started 140254480680704)>']
[2026-04-30 05:41:43] 2026-04-30 09:41:38,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 05:41:43] 2026-04-30 09:41:38,881 | INFO     | [monitor] control thread has ended
[2026-04-30 05:41:43] 2026-04-30 09:41:43,014 | INFO     | all workflow threads have been joined
[2026-04-30 05:41:43] 2026-04-30 09:41:43,014 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 05:41:43] 2026-04-30 09:41:43,015 | INFO     | traces error code: 0
[2026-04-30 05:41:43] 2026-04-30 09:41:43,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 05:41:43] 2026-04-30 09:41:43,111 [wrapper] ==== pilot stdout END ====
[2026-04-30 05:41:43] 2026-04-30 09:41:43,114 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 05:41:43] 2026-04-30 09:41:43,117 [wrapper] pilotpid: 4014018
[2026-04-30 05:41:43] 2026-04-30 09:41:43,119 [wrapper] Pilot exit status: 0
[2026-04-30 05:41:43] 2026-04-30 09:41:43,128 [wrapper] pandaids: 7119480808
[2026-04-30 05:41:43] 2026-04-30 09:41:43,214 [wrapper] cleanup supervisor_pilot 4130164 4014019
[2026-04-30 05:41:43] 2026-04-30 09:41:43,217 [wrapper] Test setup, not cleaning
[2026-04-30 05:41:43] 2026-04-30 09:41:43,219 [wrapper] apfmon messages muted
[2026-04-30 05:41:43] 2026-04-30 09:41:43,222 [wrapper] ==== wrapper stdout END ====
[2026-04-30 05:41:43] 2026-04-30 09:41:43,224 [wrapper] ==== wrapper stderr END ====
[2026-04-30 05:41:43]  *** Error codes and diagnostics ***
[2026-04-30 05:41:43]     "exeErrorCode": 0,
[2026-04-30 05:41:43]     "pilotErrorCode": 0,
[2026-04-30 05:41:43]  *** Listing of results directory ***
[2026-04-30 05:41:43] total 1258612
[2026-04-30 05:41:43] -rwx------. 1 boincer umatlas      36322 Apr 29 17:36 runpilot2-wrapper.sh
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas     683926 Apr 30 03:24 pilot3.tar.gz
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas       5631 Apr 30 03:33 queuedata.json
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas        100 Apr 30 05:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 05:41:43] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 30 05:14 run_atlas
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas        105 Apr 30 05:14 job.xml
[2026-04-30 05:41:43] -rw-r--r--. 2 boincer umatlas 1139966211 Apr 30 05:14 EVNT.49888779._000003.pool.root.1
[2026-04-30 05:41:43] -rw-r--r--. 2 boincer umatlas      15667 Apr 30 05:14 start_atlas.sh
[2026-04-30 05:41:43] drwxrwx--x. 2 boincer umatlas       4096 Apr 30 05:14 shared
[2026-04-30 05:41:43] -rw-r--r--. 2 boincer umatlas     697420 Apr 30 05:14 input.tar.gz
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas          0 Apr 30 05:14 boinc_lockfile
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas       2585 Apr 30 05:14 pandaJob.out
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas         57 Apr 30 05:14 setup.sh.local
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas    1000927 Apr 30 05:14 agis_schedconf.cvmfs.json
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas    1510841 Apr 30 05:14 agis_ddmendpoints.agis.ALL.json
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas        431 Apr 30 05:14 workernode_map.json
[2026-04-30 05:41:43] drwx------. 5 boincer umatlas       4096 Apr 30 05:14 pilot3
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas       7100 Apr 30 05:39 init_data.xml
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas        488 Apr 30 05:40 boinc_task_state.xml
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas  143652726 Apr 30 05:40 HITS.49888781._000260.pool.root.1
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas       1030 Apr 30 05:40 memory_monitor_summary.json
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas     329355 Apr 30 05:40 log.49888781._000260.job.log.tgz.1
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas       6338 Apr 30 05:40 heartbeat_new.json
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas       6229 Apr 30 05:40 heartbeat.json
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas         95 Apr 30 05:41 pilot_heartbeat.json
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas       8192 Apr 30 05:41 boinc_mmap_file
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas         27 Apr 30 05:41 wrapper_checkpoint.txt
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas       4823 Apr 30 05:41 pilotlog.txt
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas     197362 Apr 30 05:41 log.49888781._000260.job.log.1
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas        357 Apr 30 05:41 output.list
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas        410 Apr 30 05:41 runtime_log
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas     542720 Apr 30 05:41 result.tar.gz
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas       8961 Apr 30 05:41 runtime_log.err
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas        648 Apr 30 05:41 79d15fdd7a12.diag
[2026-04-30 05:41:43] -rw-r--r--. 1 boincer umatlas      20828 Apr 30 05:41 stderr.txt
[2026-04-30 05:41:43] HITS file was successfully produced:
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas 143652726 Apr 30 05:40 shared/HITS.pool.root.1
[2026-04-30 05:41:43]  *** Contents of shared directory: ***
[2026-04-30 05:41:43] total 1254780
[2026-04-30 05:41:43] -rw-r--r--. 2 boincer umatlas 1139966211 Apr 30 05:14 ATLAS.root_0
[2026-04-30 05:41:43] -rw-r--r--. 2 boincer umatlas      15667 Apr 30 05:14 start_atlas.sh
[2026-04-30 05:41:43] -rw-r--r--. 2 boincer umatlas     697420 Apr 30 05:14 input.tar.gz
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas  143652726 Apr 30 05:40 HITS.pool.root.1
[2026-04-30 05:41:43] -rw-------. 1 boincer umatlas     542720 Apr 30 05:41 result.tar.gz
05:41:45 (4009636): run_atlas exited; CPU time 16460.448413
05:41:45 (4009636): called boinc_finish(0)

</stderr_txt>
]]>

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