Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:38:46 (15152): wrapper (7.7.26015): starting
08:38:46 (15152): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 08:38:46] Arguments: --nthreads 8
[2026-04-30 08:38:46] Threads: 8
[2026-04-30 08:38:46] Checking for CVMFS
[2026-04-30 08:38:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 08:38:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 08:38:46] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 08:38:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 08:38:46] 2.11.2.0 26290 20974 99636 159036 3 11 18136612 25165824 96 130560 0 6474571 99.878 5018581 8645 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-30 08:38:46] CVMFS is ok
[2026-04-30 08:38:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 08:38:46] Checking for apptainer binary...
[2026-04-30 08:38:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 08:38:46] Running /usr/bin/apptainer --version
[2026-04-30 08:38:47] apptainer version 1.3.2-1.el7
[2026-04-30 08:38:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 08:38:48] cg-vwn429.simple-grid.lan
[2026-04-30 08:38:48] apptainer works
[2026-04-30 08:38:48] Set ATHENA_PROC_NUMBER=8
[2026-04-30 08:38:48] Set ATHENA_CORE_NUMBER=8
[2026-04-30 08:38:48] Starting ATLAS job with PandaID=7120111534
[2026-04-30 08:38:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 14:06:43]  *** The last 200 lines of the pilot log: ***
[2026-04-30 14:06:43] 2026-04-30 12:05:42,698 | INFO     | this job has now completed (state=finished)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,698 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,698 | INFO     | log transfer has been attempted: DONE
[2026-04-30 14:06:43] 2026-04-30 12:05:42,698 | INFO     | job 7120111534 has finished - writing final server update
[2026-04-30 14:06:43] 2026-04-30 12:05:42,698 | INFO     | total number of processed events: 400 (read)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,703 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-7120111534/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,704 | INFO     | extracted standard info from prmon json
[2026-04-30 14:06:43] 2026-04-30 12:05:42,704 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 14:06:43] 2026-04-30 12:05:42,705 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 14:06:43] 2026-04-30 12:05:42,705 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 14:06:43] 2026-04-30 12:05:42,711 | INFO     | fitting pss+swap vs Time
[2026-04-30 14:06:43] 2026-04-30 12:05:42,711 | INFO     | sum of square deviations: 9508390372.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,715 | INFO     | sum of deviations: 188272783819.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,715 | INFO     | mean x (centered): 0.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,715 | INFO     | mean y: 2450776.6517571886
[2026-04-30 14:06:43] 2026-04-30 12:05:42,715 | INFO     | intersect: 2450776.6517571886
[2026-04-30 14:06:43] 2026-04-30 12:05:42,716 | INFO     | chi2: 8.413280438041761
[2026-04-30 14:06:43] 2026-04-30 12:05:42,716 | INFO     | sum of square deviations: 9059954057.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,719 | INFO     | sum of deviations: 205723086301.5
[2026-04-30 14:06:43] 2026-04-30 12:05:42,720 | INFO     | mean x (centered): 0.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,720 | INFO     | mean y: 2456618.4967532465
[2026-04-30 14:06:43] 2026-04-30 12:05:42,720 | INFO     | intersect: 2456618.4967532465
[2026-04-30 14:06:43] 2026-04-30 12:05:42,720 | INFO     | chi2: 7.696913712415463
[2026-04-30 14:06:43] 2026-04-30 12:05:42,721 | INFO     | current chi2=7.696913712415463 (change=8.514713504463153 %)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,721 | INFO     | right removable region: 307
[2026-04-30 14:06:43] 2026-04-30 12:05:42,721 | INFO     | sum of square deviations: 9059954057.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,724 | INFO     | sum of deviations: 72055019447.00002
[2026-04-30 14:06:43] 2026-04-30 12:05:42,725 | INFO     | mean x (centered): 0.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,725 | INFO     | mean y: 2490300.3766233767
[2026-04-30 14:06:43] 2026-04-30 12:05:42,725 | INFO     | intersect: 2490300.3766233767
[2026-04-30 14:06:43] 2026-04-30 12:05:42,725 | INFO     | chi2: 2.9802204666440266
[2026-04-30 14:06:43] 2026-04-30 12:05:42,726 | INFO     | current chi2=2.9802204666440266 (change=64.577188546235 %)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,726 | INFO     | sum of square deviations: 8625843592.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,729 | INFO     | sum of deviations: 1381301446.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,729 | INFO     | mean x (centered): 0.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,729 | INFO     | mean y: 2515049.920792079
[2026-04-30 14:06:43] 2026-04-30 12:05:42,730 | INFO     | intersect: 2515049.920792079
[2026-04-30 14:06:43] 2026-04-30 12:05:42,730 | INFO     | chi2: 0.8857309492684704
[2026-04-30 14:06:43] 2026-04-30 12:05:42,730 | INFO     | current chi2=0.8857309492684704 (change=70.27968369515037 %)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,731 | INFO     | sum of square deviations: 8205826414.5
[2026-04-30 14:06:43] 2026-04-30 12:05:42,734 | INFO     | sum of deviations: -12939894101.5
[2026-04-30 14:06:43] 2026-04-30 12:05:42,734 | INFO     | mean x (centered): 0.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,734 | INFO     | mean y: 2520230.2315436243
[2026-04-30 14:06:43] 2026-04-30 12:05:42,734 | INFO     | intersect: 2520230.2315436243
[2026-04-30 14:06:43] 2026-04-30 12:05:42,734 | INFO     | chi2: 0.7931138811824979
[2026-04-30 14:06:43] 2026-04-30 12:05:42,735 | INFO     | current chi2=0.7931138811824979 (change=10.456569024991774 %)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,735 | INFO     | left removable region: 15
[2026-04-30 14:06:43] 2026-04-30 12:05:42,735 | INFO     | sum of square deviations: 7720081493.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,741 | INFO     | sum of deviations: 6740365403.500001
[2026-04-30 14:06:43] 2026-04-30 12:05:42,741 | INFO     | mean x (centered): 0.0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,742 | INFO     | mean y: 2527516.8184931506
[2026-04-30 14:06:43] 2026-04-30 12:05:42,742 | INFO     | intersect: 2527516.8184931506
[2026-04-30 14:06:43] 2026-04-30 12:05:42,742 | INFO     | chi2: 0.00648328841429576
[2026-04-30 14:06:43] 2026-04-30 12:05:42,743 | INFO     | current memory leak: 0.87 B/s (using 292 data points, chi2=0.01)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,743 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,743 | INFO     | ..............................
[2026-04-30 14:06:43] 2026-04-30 12:05:42,744 | INFO     | . Timing measurements:
[2026-04-30 14:06:43] 2026-04-30 12:05:42,744 | INFO     | . get job = 0 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,744 | INFO     | . initial setup = 111 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,747 | INFO     | . payload setup = 206 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,747 | INFO     | . stage-in = 0 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,747 | INFO     | . payload execution = 19191 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,747 | INFO     | . stage-out = 3 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,747 | INFO     | . log creation = 1 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,747 | INFO     | ..............................
[2026-04-30 14:06:43] 2026-04-30 12:05:42,893 | INFO     | 
[2026-04-30 14:06:43] 2026-04-30 12:05:42,893 | INFO     | job summary report
[2026-04-30 14:06:43] 2026-04-30 12:05:42,893 | INFO     | --------------------------------------------------
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | PanDA job id: 7120111534
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | task id: 49863879
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | errors: (none)
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | pilot state: finished 
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | transexitcode: 0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | exeerrorcode: 0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | exeerrordiag: 
[2026-04-30 14:06:43] 2026-04-30 12:05:42,894 | INFO     | exitcode: 0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | exitmsg: OK
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | cpuconsumptiontime: 73296 s
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | nevents: 400
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | neventsw: 0
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | pid: 23337
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | pgrp: 23337
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | corecount: 8
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | event service: False
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | sizes: {0: 2280714, 1: 2248069, 2: 2282543, 12: 2282571, 19402: 2315625, 19407: 2321046, 19410: 2321230, 19411: 2321424}
[2026-04-30 14:06:43] 2026-04-30 12:05:42,895 | INFO     | --------------------------------------------------
[2026-04-30 14:06:43] 2026-04-30 12:05:42,896 | INFO     | 
[2026-04-30 14:06:43] 2026-04-30 12:05:42,896 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-04-30 14:06:43] 2026-04-30 12:05:43,423 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,424 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,424 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,424 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,426 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 14:06:43] 2026-04-30 12:05:43,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,426 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 14:06:43] 2026-04-30 12:05:43,426 | INFO     | job 7120111534 has completed (purged errors)
[2026-04-30 14:06:43] 2026-04-30 12:05:43,426 | INFO     | overall cleanup function is called
[2026-04-30 14:06:43] 2026-04-30 12:05:44,435 | INFO     | --- collectZombieJob: --- 10, [23337]
[2026-04-30 14:06:43] 2026-04-30 12:05:44,435 | INFO     | zombie collector waiting for pid 23337
[2026-04-30 14:06:43] 2026-04-30 12:05:44,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 14:06:43] 2026-04-30 12:05:44,435 | INFO     | collected zombie processes
[2026-04-30 14:06:43] 2026-04-30 12:05:44,436 | INFO     | will attempt to kill all subprocesses of pid=23337
[2026-04-30 14:06:43] 2026-04-30 12:05:44,504 | INFO     | process IDs to be killed: [23337] (in reverse order)
[2026-04-30 14:06:43] 2026-04-30 12:05:45,510 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 14:06:43] 2026-04-30 12:05:45,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 14:06:43] 2026-04-30 12:05:45,512 | INFO     | did not find any defunct processes belonging to 23337
[2026-04-30 14:06:43] 2026-04-30 12:05:45,532 | INFO     | did not find any defunct processes belonging to 23337
[2026-04-30 14:06:43] 2026-04-30 12:05:45,533 | INFO     | Ready for new job
[2026-04-30 14:06:43] 2026-04-30 12:05:45,535 | INFO     | ***************************************
[2026-04-30 14:06:43] 2026-04-30 12:05:45,535 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 14:06:43] 2026-04-30 12:05:45,535 | INFO     | ***************************************
[2026-04-30 14:06:43] 2026-04-30 12:05:45,535 | INFO     | 
[2026-04-30 14:06:43] 2026-04-30 12:05:45,536 | INFO     | pilot is running in a VM
[2026-04-30 14:06:43] 2026-04-30 12:05:45,536 | INFO     | architecture information:
[2026-04-30 14:06:43] 2026-04-30 12:05:45,546 | INFO     | executing command: cat /etc/os-release
[2026-04-30 14:06:43] 2026-04-30 12:05:45,921 | INFO     | cat /etc/os-release:
[2026-04-30 14:06:43] NAME="CentOS Linux"
[2026-04-30 14:06:43] VERSION="7 (Core)"
[2026-04-30 14:06:43] ID="centos"
[2026-04-30 14:06:43] ID_LIKE="rhel fedora"
[2026-04-30 14:06:43] VERSION_ID="7"
[2026-04-30 14:06:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 14:06:43] ANSI_COLOR="0;31"
[2026-04-30 14:06:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 14:06:43] HOME_URL="https://www.centos.org/"
[2026-04-30 14:06:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 14:06:43] 
[2026-04-30 14:06:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 14:06:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 14:06:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 14:06:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 14:06:43] 
[2026-04-30 14:06:43] 2026-04-30 12:05:45,922 | INFO     | ***************************************
[2026-04-30 14:06:43] 2026-04-30 12:05:46,425 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-04-30 14:06:43] 2026-04-30 12:05:46,701 | INFO     | sufficient remaining disk space (496448307200 B)
[2026-04-30 14:06:43] 2026-04-30 12:05:46,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 14:06:43] 2026-04-30 12:05:46,701 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 14:06:43] 2026-04-30 12:05:46,702 | INFO     | update_server=False
[2026-04-30 14:06:43] 2026-04-30 12:05:46,702 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 14:06:43] 2026-04-30 12:05:46,843 | INFO     | all job control threads have been joined
[2026-04-30 14:06:43] 2026-04-30 12:05:47,337 | INFO     | all payload control threads have been joined
[2026-04-30 14:06:43] 2026-04-30 12:05:47,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 14:06:43] 2026-04-30 12:05:47,580 | INFO     | aborting loop
[2026-04-30 14:06:43] 2026-04-30 12:05:47,627 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 14:06:43] 2026-04-30 12:05:47,708 | INFO     | [job] retrieve thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:47,731 | INFO     | all data control threads have been joined
[2026-04-30 14:06:43] 2026-04-30 12:05:47,849 | INFO     | [job] control thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:47,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 14:06:43] 2026-04-30 12:05:47,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 14:06:43] 2026-04-30 12:05:48,119 | INFO     | [data] copytool_in thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,156 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,343 | INFO     | [payload] control thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,484 | INFO     | [payload] validate_post thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,537 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,586 | INFO     | [job] job monitor thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,603 | INFO     | [job] validate thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,738 | INFO     | [data] control thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:48,917 | INFO     | [job] queue monitor thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:49,003 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:49,048 | INFO     | [payload] failed_post thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:49,192 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:49,634 | INFO     | [data] copytool_out thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:05:51,894 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 14:06:43] 2026-04-30 12:06:14,838 | INFO     | PID=18893 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-30 14:06:43] 2026-04-30 12:06:14,838 | INFO     | .. there are 2 such processes running
[2026-04-30 14:06:43] 2026-04-30 12:06:14,838 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 14:06:43] 2026-04-30 12:06:14,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 14:06:43] 2026-04-30 12:06:14,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 14:06:43] 2026-04-30 12:06:32,178 | INFO     | [monitor] cgroup control has ended
[2026-04-30 14:06:43] 2026-04-30 12:06:33,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099660183360)>', '<ExcThread(monitor, started 140099366917888)>']
[2026-04-30 14:06:43] 2026-04-30 12:06:33,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 14:06:43] 2026-04-30 12:06:33,952 | INFO     | [monitor] control thread has ended
[2026-04-30 14:06:43] 2026-04-30 12:06:38,264 | INFO     | all workflow threads have been joined
[2026-04-30 14:06:43] 2026-04-30 12:06:38,264 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 14:06:43] 2026-04-30 12:06:38,265 | INFO     | traces error code: 0
[2026-04-30 14:06:43] 2026-04-30 12:06:38,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 14:06:43] 2026-04-30 12:06:38,785 [wrapper] ==== pilot stdout END ====
[2026-04-30 14:06:43] 2026-04-30 12:06:38,881 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 14:06:43] 2026-04-30 12:06:38,979 [wrapper] pilotpid: 18893
[2026-04-30 14:06:43] 2026-04-30 12:06:39,067 [wrapper] Pilot exit status: 0
[2026-04-30 14:06:43] 2026-04-30 12:06:39,454 [wrapper] pandaids: 7120111534
[2026-04-30 14:06:43] 2026-04-30 12:06:40,291 [wrapper] cleanup supervisor_pilot 31078 18894
[2026-04-30 14:06:43] 2026-04-30 12:06:40,339 [wrapper] Test setup, not cleaning
[2026-04-30 14:06:43] 2026-04-30 12:06:40,442 [wrapper] apfmon messages muted
[2026-04-30 14:06:43] 2026-04-30 12:06:40,542 [wrapper] ==== wrapper stdout END ====
[2026-04-30 14:06:43] 2026-04-30 12:06:40,676 [wrapper] ==== wrapper stderr END ====
[2026-04-30 14:06:43]  *** Error codes and diagnostics ***
[2026-04-30 14:06:43]     "exeErrorCode": 0,
[2026-04-30 14:06:43]     "pilotErrorCode": 0,
[2026-04-30 14:06:43]  *** Listing of results directory ***
[2026-04-30 14:06:43] total 470604
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc    683926 Apr 30 08:14 pilot3.tar.gz
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc      5631 Apr 30 08:37 queuedata.json
[2026-04-30 14:06:43] -rwx------. 1 boinc boinc     36322 Apr 30 08:37 runpilot2-wrapper.sh
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc       100 Apr 30 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 14:06:43] -rwxr-xr-x. 1 boinc boinc      7986 Apr 30 08:38 run_atlas
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc       105 Apr 30 08:38 job.xml
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc      6309 Apr 30 08:38 init_data.xml
[2026-04-30 14:06:43] -rw-r--r--. 2 boinc boinc 263584473 Apr 30 08:38 EVNT.49863876._000103.pool.root.1
[2026-04-30 14:06:43] -rw-r--r--. 2 boinc boinc     15667 Apr 30 08:38 start_atlas.sh
[2026-04-30 14:06:43] drwxrwx--x. 2 boinc boinc        68 Apr 30 08:38 shared
[2026-04-30 14:06:43] -rw-r--r--. 2 boinc boinc    697416 Apr 30 08:38 input.tar.gz
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc         0 Apr 30 08:38 boinc_lockfile
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc      2575 Apr 30 08:38 pandaJob.out
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc       415 Apr 30 08:41 workernode_map.json
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc   1001870 Apr 30 08:41 agis_schedconf.cvmfs.json
[2026-04-30 14:06:43] drwx------. 5 boinc boinc      4096 Apr 30 08:42 pilot3
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc 209721818 Apr 30 14:04 HITS.49863879._002553.pool.root.1
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc       488 Apr 30 14:04 boinc_task_state.xml
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc      1013 Apr 30 14:05 memory_monitor_summary.json
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc   1510841 Apr 30 14:05 agis_ddmendpoints.agis.ALL.json
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc    442768 Apr 30 14:05 log.49863879._002553.job.log.tgz.1
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc        95 Apr 30 14:05 pilot_heartbeat.json
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc      6333 Apr 30 14:05 heartbeat_new.json
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc      6224 Apr 30 14:05 heartbeat.json
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc      8192 Apr 30 14:06 boinc_mmap_file
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc        28 Apr 30 14:06 wrapper_checkpoint.txt
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc      4884 Apr 30 14:06 pilotlog.txt
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc   1790656 Apr 30 14:06 log.49863879._002553.job.log.1
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc       357 Apr 30 14:06 output.list
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc       410 Apr 30 14:06 runtime_log
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc   2252800 Apr 30 14:06 result.tar.gz
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc      8455 Apr 30 14:06 runtime_log.err
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc       656 Apr 30 14:06 f89edabdd673.diag
[2026-04-30 14:06:43] -rw-r--r--. 1 boinc boinc     20574 Apr 30 14:06 stderr.txt
[2026-04-30 14:06:43] HITS file was successfully produced:
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc 209721818 Apr 30 14:04 shared/HITS.pool.root.1
[2026-04-30 14:06:43]  *** Contents of shared directory: ***
[2026-04-30 14:06:43] total 465116
[2026-04-30 14:06:43] -rw-r--r--. 2 boinc boinc 263584473 Apr 30 08:38 ATLAS.root_0
[2026-04-30 14:06:43] -rw-r--r--. 2 boinc boinc     15667 Apr 30 08:38 start_atlas.sh
[2026-04-30 14:06:43] -rw-r--r--. 2 boinc boinc    697416 Apr 30 08:38 input.tar.gz
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc 209721818 Apr 30 14:04 HITS.pool.root.1
[2026-04-30 14:06:43] -rw-------. 1 boinc boinc   2252800 Apr 30 14:06 result.tar.gz
14:06:45 (15152): run_atlas exited; CPU time 73479.949704
14:06:45 (15152): called boinc_finish(0)

</stderr_txt>
]]>

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