Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:01:15 (4012034): wrapper (7.7.26015): starting
00:01:15 (4012034): wrapper: running run_atlas (--nthreads 12)
[2026-05-01 00:01:15] Arguments: --nthreads 12
[2026-05-01 00:01:15] Threads: 12
[2026-05-01 00:01:15] Checking for CVMFS
[2026-05-01 00:01:15] No cvmfs_config command found, will try listing directly
[2026-05-01 00:01:15] CVMFS is ok
[2026-05-01 00:01:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 00:01:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 00:01:15] Further information can be found at the LHC@home message board.
[2026-05-01 00:01:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 00:01:15] Checking for apptainer binary...
[2026-05-01 00:01:15] which: no apptainer in ((null))
[2026-05-01 00:01:15] apptainer is not installed, using version from CVMFS
[2026-05-01 00:01:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 00:01:15] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-05-01 00:01:15] apptainer works
[2026-05-01 00:01:15] Set ATHENA_PROC_NUMBER=12
[2026-05-01 00:01:15] Set ATHENA_CORE_NUMBER=12
[2026-05-01 00:01:15] Starting ATLAS job with PandaID=7118492140
[2026-05-01 00:01:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 00:39:35]  *** The last 200 lines of the pilot log: ***
[2026-05-01 00:39:35]  filesize=336172
[2026-05-01 00:39:35]  filetype=log
[2026-05-01 00:39:35]  guid=96d3d0e9-2e38-44a6-8baa-e9c24cc033ff
[2026-05-01 00:39:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-01 00:39:35]  is_altstaged=None
[2026-05-01 00:39:35]  is_tar=False
[2026-05-01 00:39:35]  lfn=log.49863869._002822.job.log.tgz.1
[2026-05-01 00:39:35]  mtime=0
[2026-05-01 00:39:35]  protocol_id=None
[2026-05-01 00:39:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-01 00:39:35]  replicas=None
[2026-05-01 00:39:35]  scope=mc23_13p6TeV
[2026-05-01 00:39:35]  status=None
[2026-05-01 00:39:35]  status_code=0
[2026-05-01 00:39:35]  storage_token=
[2026-05-01 00:39:35]  surl=/var/lib/boinc/var/slot216/slots/1/PanDA_Pilot-7118492140/log.49863869._002822.job.log.tgz.1
[2026-05-01 00:39:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/38/log.49863869._002822.job.log.tgz.1
[2026-05-01 00:39:35]  workdir=None
[2026-05-01 00:39:35] ]
[2026-05-01 00:39:35] 2026-04-30 22:38:30,703 | INFO     | transferring file log.49863869._002822.job.log.tgz.1 from /var/lib/boinc/var/slot216/slots/1/PanDA_Pilot-7118492140/log.49863869._002822.job.log.tgz.1 to /var/lib/
[2026-05-01 00:39:35] 2026-04-30 22:38:30,703 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot216/slots/1/PanDA_Pilot-7118492140/log.49863869._002822.job.log.tgz.1 /var/lib/boinc/var/slot216/slots/1/
[2026-05-01 00:39:35] 2026-04-30 22:38:30,719 | INFO     | adding to output.list: log.49863869._002822.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/38/log.49863869._002822.job.log.tg
[2026-05-01 00:39:35] 2026-04-30 22:38:30,720 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-01 00:39:35] 2026-04-30 22:38:30,720 | INFO     | summary of transferred files:
[2026-05-01 00:39:35] 2026-04-30 22:38:30,720 | INFO     |  -- lfn=log.49863869._002822.job.log.tgz.1, status_code=0, status=transferred
[2026-05-01 00:39:35] 2026-04-30 22:38:30,720 | INFO     | stage-out finished correctly
[2026-05-01 00:39:35] 2026-04-30 22:38:31,039 | INFO     | monitor loop #171: job 0:7118492140 is in state 'finished'
[2026-05-01 00:39:35] 2026-04-30 22:38:31,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-01 00:39:35] 2026-04-30 22:38:32,688 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-01 00:39:35] 2026-04-30 22:38:33,542 | INFO     | monitor loop #172: job 0:7118492140 is in state 'finished'
[2026-05-01 00:39:35] 2026-04-30 22:38:33,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,315 | INFO     | job 7118492140 has state=finished
[2026-05-01 00:39:35] 2026-04-30 22:38:35,316 | INFO     | preparing for final server update for job 7118492140 in state='finished'
[2026-05-01 00:39:35] 2026-04-30 22:38:35,316 | INFO     | reading metadata from: /var/lib/boinc/var/slot216/slots/1/PanDA_Pilot-7118492140/jobReport.json
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot216/slots/1/workernode_map.json
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | INFO     | this job has now completed (state=finished)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | INFO     | log transfer has been attempted: DONE
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | INFO     | job 7118492140 has finished - writing final server update
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4023484/.job.ad'
[2026-05-01 00:39:35] 2026-04-30 22:38:35,318 | INFO     | total number of processed events: 400 (read)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,336 | INFO     | using path: /var/lib/boinc/var/slot216/slots/1/PanDA_Pilot-7118492140/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,336 | INFO     | extracted standard info from prmon json
[2026-05-01 00:39:35] 2026-04-30 22:38:35,336 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 00:39:35] 2026-04-30 22:38:35,337 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 00:39:35] 2026-04-30 22:38:35,337 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 00:39:35] 2026-04-30 22:38:35,337 | INFO     | fitting pss+swap vs Time
[2026-05-01 00:39:35] 2026-04-30 22:38:35,337 | INFO     | sum of square deviations: 8362947.5
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | sum of deviations: 206038541.0
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | mean x (centered): 0.0
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | mean y: 2711354.8666666667
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | intersect: 2711354.8666666667
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | chi2: 0.00023073546465018108
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | current memory leak: 24.64 B/s (using 30 data points, chi2=0.00)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | could have reported an average CPU frequency of 3590 MHz (5 samples)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | ..............................
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . Timing measurements:
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . get job = 0 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . initial setup = 4 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . payload setup = 6 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . stage-in = 0 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . payload execution = 2204 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . stage-out = 0 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | . log creation = 0 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,338 | INFO     | ..............................
[2026-05-01 00:39:35] 2026-04-30 22:38:35,391 | INFO     | 
[2026-05-01 00:39:35] 2026-04-30 22:38:35,391 | INFO     | job summary report
[2026-05-01 00:39:35] 2026-04-30 22:38:35,391 | INFO     | --------------------------------------------------
[2026-05-01 00:39:35] 2026-04-30 22:38:35,391 | INFO     | PanDA job id: 7118492140
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | task id: 49863869
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | errors: (none)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | pilot state: finished 
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | transexitcode: 0
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | exeerrorcode: 0
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | exeerrordiag: 
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | exitcode: 0
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | exitmsg: OK
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | cpuconsumptiontime: 23914 s
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | nevents: 400
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | neventsw: 0
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | pid: 4024336
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | pgrp: 4024336
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | corecount: 12
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | event service: False
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | sizes: {0: 2278347, 11: 2278347, 2213: 2303472, 2214: 2312494, 2215: 2312550, 2218: 2312776}
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | --------------------------------------------------
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | 
[2026-05-01 00:39:35] 2026-04-30 22:38:35,392 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/1
[2026-05-01 00:39:35] 2026-04-30 22:38:35,410 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | job 7118492140 has completed (purged errors)
[2026-05-01 00:39:35] 2026-04-30 22:38:35,411 | INFO     | overall cleanup function is called
[2026-05-01 00:39:35] 2026-04-30 22:38:36,418 | INFO     | --- collectZombieJob: --- 10, [4024336]
[2026-05-01 00:39:35] 2026-04-30 22:38:36,419 | INFO     | zombie collector waiting for pid 4024336
[2026-05-01 00:39:35] 2026-04-30 22:38:36,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 00:39:35] 2026-04-30 22:38:36,419 | INFO     | collected zombie processes
[2026-05-01 00:39:35] 2026-04-30 22:38:36,419 | INFO     | will attempt to kill all subprocesses of pid=4024336
[2026-05-01 00:39:35] 2026-04-30 22:38:36,665 | INFO     | process IDs to be killed: [4024336] (in reverse order)
[2026-05-01 00:39:35] 2026-04-30 22:38:36,773 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 00:39:35] 2026-04-30 22:38:36,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 00:39:35] 2026-04-30 22:38:36,795 | INFO     | did not find any defunct processes belonging to 4024336
[2026-05-01 00:39:35] 2026-04-30 22:38:36,813 | INFO     | did not find any defunct processes belonging to 4024336
[2026-05-01 00:39:35] 2026-04-30 22:38:36,813 | INFO     | Ready for new job
[2026-05-01 00:39:35] 2026-04-30 22:38:36,814 | INFO     | ***************************************
[2026-05-01 00:39:35] 2026-04-30 22:38:36,814 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 00:39:35] 2026-04-30 22:38:36,814 | INFO     | ***************************************
[2026-05-01 00:39:35] 2026-04-30 22:38:36,814 | INFO     | 
[2026-05-01 00:39:35] 2026-04-30 22:38:36,821 | INFO     | architecture information:
[2026-05-01 00:39:35] 2026-04-30 22:38:36,821 | INFO     | executing command: cat /etc/os-release
[2026-05-01 00:39:35] 2026-04-30 22:38:36,832 | INFO     | cat /etc/os-release:
[2026-05-01 00:39:35] NAME="CentOS Linux"
[2026-05-01 00:39:35] VERSION="7 (Core)"
[2026-05-01 00:39:35] ID="centos"
[2026-05-01 00:39:35] ID_LIKE="rhel fedora"
[2026-05-01 00:39:35] VERSION_ID="7"
[2026-05-01 00:39:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 00:39:35] ANSI_COLOR="0;31"
[2026-05-01 00:39:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 00:39:35] HOME_URL="https://www.centos.org/"
[2026-05-01 00:39:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 00:39:35] 
[2026-05-01 00:39:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 00:39:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 00:39:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 00:39:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 00:39:35] 
[2026-05-01 00:39:35] 2026-04-30 22:38:36,832 | INFO     | ***************************************
[2026-05-01 00:39:35] 2026-04-30 22:38:37,335 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/1
[2026-05-01 00:39:35] 2026-04-30 22:38:37,347 | INFO     | sufficient remaining disk space (121114722304 B)
[2026-05-01 00:39:35] 2026-04-30 22:38:37,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 00:39:35] 2026-04-30 22:38:37,348 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 00:39:35] 2026-04-30 22:38:37,348 | INFO     | update_server=False
[2026-05-01 00:39:35] 2026-04-30 22:38:37,348 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 00:39:35] 2026-04-30 22:38:37,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 00:39:35] 2026-04-30 22:38:37,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 00:39:35] 2026-04-30 22:38:37,349 | INFO     | aborting loop
[2026-05-01 00:39:35] 2026-04-30 22:38:37,418 | INFO     | all job control threads have been joined
[2026-05-01 00:39:35] 2026-04-30 22:38:38,119 | INFO     | all payload control threads have been joined
[2026-05-01 00:39:35] 2026-04-30 22:38:38,318 | INFO     | all data control threads have been joined
[2026-05-01 00:39:35] 2026-04-30 22:38:38,352 | INFO     | [job] retrieve thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,353 | INFO     | [job] job monitor thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,354 | INFO     | [job] queue monitor thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,424 | INFO     | [job] control thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,519 | INFO     | [job] validate thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,705 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,725 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 00:39:35] 2026-04-30 22:38:38,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 00:39:35] 2026-04-30 22:38:38,823 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:38,935 | INFO     | [data] copytool_in thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:39,125 | INFO     | [payload] control thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:39,222 | INFO     | [payload] validate_post thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:39,323 | INFO     | [data] control thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:39,810 | INFO     | [payload] failed_post thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:40,783 | INFO     | [data] copytool_out thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:42,748 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:38:48,046 | INFO     | job.realtimelogging is not enabled
[2026-05-01 00:39:35] 2026-04-30 22:38:49,051 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 00:39:35] 2026-04-30 22:39:07,204 | INFO     | PID=4016533 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 00:39:35] 2026-04-30 22:39:07,204 | INFO     | .. there are 19 such processes running
[2026-05-01 00:39:35] 2026-04-30 22:39:07,206 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 00:39:35] 2026-04-30 22:39:07,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 00:39:35] 2026-04-30 22:39:07,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 00:39:35] 2026-04-30 22:39:28,550 | INFO     | [monitor] cgroup control has ended
[2026-05-01 00:39:35] 2026-04-30 22:39:29,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22551688750912)>', '<ExcThread(monitor, started 22551386367744)>']
[2026-05-01 00:39:35] 2026-04-30 22:39:30,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 00:39:35] 2026-04-30 22:39:30,311 | INFO     | [monitor] control thread has ended
[2026-05-01 00:39:35] 2026-04-30 22:39:34,822 | INFO     | all workflow threads have been joined
[2026-05-01 00:39:35] 2026-04-30 22:39:34,822 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 00:39:35] 2026-04-30 22:39:34,823 | INFO     | traces error code: 0
[2026-05-01 00:39:35] 2026-04-30 22:39:34,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 00:39:35] 2026-04-30 22:39:35,006 [wrapper] ==== pilot stdout END ====
[2026-05-01 00:39:35] 2026-04-30 22:39:35,009 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 00:39:35] 2026-04-30 22:39:35,012 [wrapper] pilotpid: 4016533
[2026-05-01 00:39:35] 2026-04-30 22:39:35,014 [wrapper] Pilot exit status: 0
[2026-05-01 00:39:35] 2026-04-30 22:39:35,022 [wrapper] pandaids: 7118492140
[2026-05-01 00:39:35] 2026-04-30 22:39:35,099 [wrapper] cleanup supervisor_pilot   71269 4016534
[2026-05-01 00:39:35] 2026-04-30 22:39:35,101 [wrapper] Test setup, not cleaning
[2026-05-01 00:39:35] 2026-04-30 22:39:35,104 [wrapper] apfmon messages muted
[2026-05-01 00:39:35] 2026-04-30 22:39:35,106 [wrapper] ==== wrapper stdout END ====
[2026-05-01 00:39:35] 2026-04-30 22:39:35,108 [wrapper] ==== wrapper stderr END ====
[2026-05-01 00:39:35]  *** Error codes and diagnostics ***
[2026-05-01 00:39:35]     "exeErrorCode": 0,
[2026-05-01 00:39:35]     "pilotErrorCode": 0,
[2026-05-01 00:39:35]  *** Listing of results directory ***
[2026-05-01 00:39:35] total 462492
[2026-05-01 00:39:35] -rwx------. 1 boinc boinc     36322 Apr 29 12:21 runpilot2-wrapper.sh
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc    683926 Apr 30 01:05 pilot3.tar.gz
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc      5631 Apr 30 01:16 queuedata.json
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc       100 May  1 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 00:39:35] -rwxr-xr-x. 1 boinc boinc      7986 May  1 00:01 run_atlas
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc       105 May  1 00:01 job.xml
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc      6631 May  1 00:01 init_data.xml
[2026-05-01 00:39:35] -rw-r--r--. 2 boinc boinc 258213895 May  1 00:01 EVNT.49863867._000133.pool.root.1
[2026-05-01 00:39:35] -rw-r--r--. 2 boinc boinc     15667 May  1 00:01 start_atlas.sh
[2026-05-01 00:39:35] drwxrwx--x. 2 boinc boinc      4096 May  1 00:01 shared
[2026-05-01 00:39:35] -rw-r--r--. 2 boinc boinc    697419 May  1 00:01 input.tar.gz
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc         0 May  1 00:01 boinc_lockfile
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc      2575 May  1 00:01 pandaJob.out
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc    997566 May  1 00:01 agis_schedconf.cvmfs.json
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc   1510091 May  1 00:01 agis_ddmendpoints.agis.ALL.json
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc       445 May  1 00:01 workernode_map.json
[2026-05-01 00:39:35] drwx------. 5 boinc boinc      4096 May  1 00:01 pilot3
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc       488 May  1 00:38 boinc_task_state.xml
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc 210054035 May  1 00:38 HITS.49863869._002822.pool.root.1
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc      1041 May  1 00:38 memory_monitor_summary.json
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc    336172 May  1 00:38 log.49863869._002822.job.log.tgz.1
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc      6373 May  1 00:38 heartbeat_new.json
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc      6264 May  1 00:38 heartbeat.json
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc        95 May  1 00:39 pilot_heartbeat.json
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc      8192 May  1 00:39 boinc_mmap_file
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc        27 May  1 00:39 wrapper_checkpoint.txt
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc      4906 May  1 00:39 pilotlog.txt
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc    257050 May  1 00:39 log.49863869._002822.job.log.1
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc       357 May  1 00:39 output.list
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc       410 May  1 00:39 runtime_log
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc    614400 May  1 00:39 result.tar.gz
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc      8846 May  1 00:39 runtime_log.err
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc       661 May  1 00:39 dbb67c713bb8.diag
[2026-05-01 00:39:35] -rw-r--r--. 1 boinc boinc     21022 May  1 00:39 stderr.txt
[2026-05-01 00:39:35] HITS file was successfully produced:
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc 210054035 May  1 00:38 shared/HITS.pool.root.1
[2026-05-01 00:39:35]  *** Contents of shared directory: ***
[2026-05-01 00:39:35] total 458604
[2026-05-01 00:39:35] -rw-r--r--. 2 boinc boinc 258213895 May  1 00:01 ATLAS.root_0
[2026-05-01 00:39:35] -rw-r--r--. 2 boinc boinc     15667 May  1 00:01 start_atlas.sh
[2026-05-01 00:39:35] -rw-r--r--. 2 boinc boinc    697419 May  1 00:01 input.tar.gz
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc 210054035 May  1 00:38 HITS.pool.root.1
[2026-05-01 00:39:35] -rw-------. 1 boinc boinc    614400 May  1 00:39 result.tar.gz
00:39:37 (4012034): run_atlas exited; CPU time 23955.841568
00:39:37 (4012034): called boinc_finish(0)

</stderr_txt>
]]>

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