Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:09:02 (3945365): wrapper (7.7.26015): starting
05:09:02 (3945365): wrapper: running run_atlas (--nthreads 4)
[2026-05-03 05:09:02] Arguments: --nthreads 4
[2026-05-03 05:09:02] Threads: 4
[2026-05-03 05:09:02] Checking for CVMFS
[2026-05-03 05:09:02] No cvmfs_config command found, will try listing directly
[2026-05-03 05:09:02] CVMFS is ok
[2026-05-03 05:09:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 05:09:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 05:09:02] Further information can be found at the LHC@home message board.
[2026-05-03 05:09:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 05:09:02] Checking for apptainer binary...
[2026-05-03 05:09:02] which: no apptainer in ((null))
[2026-05-03 05:09:02] apptainer is not installed, using version from CVMFS
[2026-05-03 05:09:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 05:09:02] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-05-03 05:09:02] apptainer works
[2026-05-03 05:09:02] Set ATHENA_PROC_NUMBER=4
[2026-05-03 05:09:02] Set ATHENA_CORE_NUMBER=4
[2026-05-03 05:09:02] Starting ATLAS job with PandaID=7119482594
[2026-05-03 05:09:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:39:18 (4048865): wrapper (7.7.26015): starting
05:39:18 (4048865): wrapper: running run_atlas (--nthreads 4)
[2026-05-03 05:39:18] Arguments: --nthreads 4
[2026-05-03 05:39:18] Threads: 4
[2026-05-03 05:39:18] This job has been restarted, cleaning up previous attempt
[2026-05-03 05:39:18] Checking for CVMFS
[2026-05-03 05:39:18] No cvmfs_config command found, will try listing directly
[2026-05-03 05:39:18] CVMFS is ok
[2026-05-03 05:39:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 05:39:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 05:39:18] Further information can be found at the LHC@home message board.
[2026-05-03 05:39:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 05:39:18] Checking for apptainer binary...
[2026-05-03 05:39:18] which: no apptainer in ((null))
[2026-05-03 05:39:18] apptainer is not installed, using version from CVMFS
[2026-05-03 05:39:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 05:39:18] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-05-03 05:39:18] apptainer works
[2026-05-03 05:39:18] Set ATHENA_PROC_NUMBER=4
[2026-05-03 05:39:18] Set ATHENA_CORE_NUMBER=4
[2026-05-03 05:39:18] Starting ATLAS job with PandaID=7119482594
[2026-05-03 05:39:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 07:51:48]  *** The last 200 lines of the pilot log: ***
[2026-05-03 07:51:48] 2026-05-03 05:50:58,911 | INFO     | mean y: 2300093.129032258
[2026-05-03 07:51:48] 2026-05-03 05:50:58,911 | INFO     | intersect: 2300093.129032258
[2026-05-03 07:51:48] 2026-05-03 05:50:58,911 | INFO     | chi2: 1.0977232731698945
[2026-05-03 07:51:48] 2026-05-03 05:50:58,912 | INFO     | current chi2=1.0977232731698945 (change=-0.11744231341649312 %)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,912 | INFO     | right removable region: 123
[2026-05-03 07:51:48] 2026-05-03 05:50:58,912 | INFO     | sum of square deviations: 591173875.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,913 | INFO     | sum of deviations: 411364510.5000001
[2026-05-03 07:51:48] 2026-05-03 05:50:58,913 | INFO     | mean x (centered): 0.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,913 | INFO     | mean y: 2325400.330645161
[2026-05-03 07:51:48] 2026-05-03 05:50:58,913 | INFO     | intersect: 2325400.330645161
[2026-05-03 07:51:48] 2026-05-03 05:50:58,913 | INFO     | chi2: 0.0006596467334768478
[2026-05-03 07:51:48] 2026-05-03 05:50:58,913 | INFO     | current chi2=0.0006596467334768478 (change=99.93983716534007 %)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,914 | INFO     | sum of square deviations: 522502820.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,914 | INFO     | sum of deviations: 604584481.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,914 | INFO     | mean x (centered): 0.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,914 | INFO     | mean y: 2324969.7899159663
[2026-05-03 07:51:48] 2026-05-03 05:50:58,914 | INFO     | intersect: 2324969.7899159663
[2026-05-03 07:51:48] 2026-05-03 05:50:58,915 | INFO     | chi2: 0.00047678129306929823
[2026-05-03 07:51:48] 2026-05-03 05:50:58,915 | INFO     | current chi2=0.00047678129306929823 (change=27.721723026461063 %)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,915 | INFO     | sum of square deviations: 459366752.5
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | sum of deviations: 728309530.5
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | mean x (centered): 0.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | mean y: 2324673.9210526315
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | intersect: 2324673.9210526315
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | chi2: 0.00033191079428647983
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | current chi2=0.00033191079428647983 (change=30.38510547471544 %)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,916 | INFO     | sum of square deviations: 401533110.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,917 | INFO     | sum of deviations: 763739398.0000001
[2026-05-03 07:51:48] 2026-05-03 05:50:58,917 | INFO     | mean x (centered): 0.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,917 | INFO     | mean y: 2324578.9357798165
[2026-05-03 07:51:48] 2026-05-03 05:50:58,917 | INFO     | intersect: 2324578.9357798165
[2026-05-03 07:51:48] 2026-05-03 05:50:58,918 | INFO     | chi2: 0.00027039940510570543
[2026-05-03 07:51:48] 2026-05-03 05:50:58,918 | INFO     | current chi2=0.00027039940510570543 (change=18.532506396186232 %)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,918 | INFO     | left removable region: 20
[2026-05-03 07:51:48] 2026-05-03 05:50:58,918 | INFO     | sum of square deviations: 338804492.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,918 | INFO     | sum of deviations: 659117017.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,919 | INFO     | mean x (centered): 0.0
[2026-05-03 07:51:48] 2026-05-03 05:50:58,919 | INFO     | mean y: 2324273.495145631
[2026-05-03 07:51:48] 2026-05-03 05:50:58,919 | INFO     | intersect: 2324273.495145631
[2026-05-03 07:51:48] 2026-05-03 05:50:58,919 | INFO     | chi2: 0.0002696371025532522
[2026-05-03 07:51:48] 2026-05-03 05:50:58,919 | INFO     | current memory leak: 1.95 B/s (using 103 data points, chi2=0.00)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,919 | INFO     | could have reported an average CPU frequency of 2700 MHz (8 samples)
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | ..............................
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . Timing measurements:
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . get job = 0 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . initial setup = 0 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . payload setup = 9 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . stage-in = 0 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . payload execution = 7863 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . stage-out = 0 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | . log creation = 0 s
[2026-05-03 07:51:48] 2026-05-03 05:50:58,920 | INFO     | ..............................
[2026-05-03 07:51:48] 2026-05-03 05:50:59,014 | INFO     | 
[2026-05-03 07:51:48] 2026-05-03 05:50:59,014 | INFO     | job summary report
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | --------------------------------------------------
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | PanDA job id: 7119482594
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | task id: 49888781
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | errors: (none)
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | pilot state: finished 
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | transexitcode: 0
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | exeerrorcode: 0
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | exeerrordiag: 
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | exitcode: 0
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | exitmsg: OK
[2026-05-03 07:51:48] 2026-05-03 05:50:59,015 | INFO     | cpuconsumptiontime: 29003 s
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | nevents: 400
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | neventsw: 0
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | pid: 4059950
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | pgrp: 4059950
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | corecount: 4
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | event service: False
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | sizes: {0: 2275555, 1: 2277185, 11: 2277213, 7876: 2305081, 7877: 2305080, 7878: 2314342, 7880: 2314480}
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | --------------------------------------------------
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | 
[2026-05-03 07:51:48] 2026-05-03 05:50:59,016 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot104/slots/0
[2026-05-03 07:51:48] 2026-05-03 05:50:59,050 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 07:51:48] 2026-05-03 05:50:59,052 | INFO     | job 7119482594 has completed (purged errors)
[2026-05-03 07:51:48] 2026-05-03 05:50:59,053 | INFO     | overall cleanup function is called
[2026-05-03 07:51:48] 2026-05-03 05:50:59,821 | WARNING  | process 4059950 can no longer be monitored (due to stat problems) - aborting
[2026-05-03 07:51:48] 2026-05-03 05:51:00,062 | INFO     | --- collectZombieJob: --- 10, [4059950]
[2026-05-03 07:51:48] 2026-05-03 05:51:00,062 | INFO     | zombie collector waiting for pid 4059950
[2026-05-03 07:51:48] 2026-05-03 05:51:00,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 07:51:48] 2026-05-03 05:51:00,063 | INFO     | collected zombie processes
[2026-05-03 07:51:48] 2026-05-03 05:51:00,063 | INFO     | will attempt to kill all subprocesses of pid=4059950
[2026-05-03 07:51:48] 2026-05-03 05:51:00,984 | INFO     | using path: /var/lib/boinc/var/slot104/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 07:51:48] 2026-05-03 05:51:00,985 | INFO     | using path: /var/lib/boinc/var/slot104/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 07:51:48] 2026-05-03 05:51:00,986 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-03 07:51:48] 2026-05-03 05:51:00,986 | WARNING  | maxPSS not found in memory monitor output
[2026-05-03 07:51:48] 2026-05-03 05:51:00,986 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot104/slots/0/PanDA_Pilot-7119482594/payload.stdout) since it has not been created yet
[2026-05-03 07:51:48] 2026-05-03 05:51:00,986 | INFO     | executing command: df -mP /var/lib/boinc/var/slot104/slots/0
[2026-05-03 07:51:48] 2026-05-03 05:51:01,026 | INFO     | sufficient remaining disk space (189939056640 B)
[2026-05-03 07:51:48] 2026-05-03 05:51:01,027 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-03 07:51:48] 2026-05-03 05:51:01,027 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot104/slots/0/PanDA_Pilot-7119482594/HITS.49888781._000436.pool.root.1 since it does not exist
[2026-05-03 07:51:48] 2026-05-03 05:51:01,816 | INFO     | process IDs to be killed: [4059950] (in reverse order)
[2026-05-03 07:51:48] 2026-05-03 05:51:02,344 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 07:51:48] 2026-05-03 05:51:02,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 07:51:48] 2026-05-03 05:51:02,373 | INFO     | number of running child processes to parent process 4059950: 1
[2026-05-03 07:51:48] 2026-05-03 05:51:02,374 | INFO     | maximum number of monitored processes: 6
[2026-05-03 07:51:48] 2026-05-03 05:51:02,374 | INFO     | aborting job monitoring since job object (job id=7119482594) has expired
[2026-05-03 07:51:48] 2026-05-03 05:51:02,429 | INFO     | did not find any defunct processes belonging to 4059950
[2026-05-03 07:51:48] 2026-05-03 05:51:02,461 | INFO     | did not find any defunct processes belonging to 4059950
[2026-05-03 07:51:48] 2026-05-03 05:51:02,461 | INFO     | Ready for new job
[2026-05-03 07:51:48] 2026-05-03 05:51:02,464 | INFO     | ***************************************
[2026-05-03 07:51:48] 2026-05-03 05:51:02,464 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 07:51:48] 2026-05-03 05:51:02,464 | INFO     | ***************************************
[2026-05-03 07:51:48] 2026-05-03 05:51:02,464 | INFO     | 
[2026-05-03 07:51:48] 2026-05-03 05:51:02,473 | INFO     | architecture information:
[2026-05-03 07:51:48] 2026-05-03 05:51:02,473 | INFO     | executing command: cat /etc/os-release
[2026-05-03 07:51:48] 2026-05-03 05:51:02,519 | INFO     | cat /etc/os-release:
[2026-05-03 07:51:48] NAME="CentOS Linux"
[2026-05-03 07:51:48] VERSION="7 (Core)"
[2026-05-03 07:51:48] ID="centos"
[2026-05-03 07:51:48] ID_LIKE="rhel fedora"
[2026-05-03 07:51:48] VERSION_ID="7"
[2026-05-03 07:51:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 07:51:48] ANSI_COLOR="0;31"
[2026-05-03 07:51:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 07:51:48] HOME_URL="https://www.centos.org/"
[2026-05-03 07:51:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 07:51:48] 
[2026-05-03 07:51:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 07:51:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 07:51:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 07:51:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 07:51:48] 
[2026-05-03 07:51:48] 2026-05-03 05:51:02,519 | INFO     | ***************************************
[2026-05-03 07:51:48] 2026-05-03 05:51:03,022 | INFO     | executing command: df -mP /var/lib/boinc/var/slot104/slots/0
[2026-05-03 07:51:48] 2026-05-03 05:51:03,046 | INFO     | sufficient remaining disk space (189940105216 B)
[2026-05-03 07:51:48] 2026-05-03 05:51:03,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 07:51:48] 2026-05-03 05:51:03,047 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 07:51:48] 2026-05-03 05:51:03,047 | INFO     | update_server=False
[2026-05-03 07:51:48] 2026-05-03 05:51:03,047 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 07:51:48] 2026-05-03 05:51:03,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 07:51:48] 2026-05-03 05:51:03,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 07:51:48] 2026-05-03 05:51:03,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 07:51:48] 2026-05-03 05:51:03,048 | INFO     | will abort loop
[2026-05-03 07:51:48] 2026-05-03 05:51:03,067 | INFO     | all data control threads have been joined
[2026-05-03 07:51:48] 2026-05-03 05:51:03,521 | INFO     | all job control threads have been joined
[2026-05-03 07:51:48] 2026-05-03 05:51:03,694 | INFO     | all payload control threads have been joined
[2026-05-03 07:51:48] 2026-05-03 05:51:04,028 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 07:51:48] 2026-05-03 05:51:04,053 | INFO     | [job] retrieve thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:04,058 | INFO     | [job] job monitor thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:04,073 | INFO     | [data] control thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:04,489 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:04,526 | INFO     | [job] control thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:04,699 | INFO     | [payload] control thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:04,958 | INFO     | [payload] validate_post thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,037 | INFO     | [job] queue monitor thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,059 | INFO     | [data] copytool_out thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,083 | INFO     | [job] validate thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,086 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,283 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,458 | INFO     | [data] copytool_in thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:05,535 | INFO     | [payload] failed_post thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:07,059 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:13,624 | INFO     | job.realtimelogging is not enabled
[2026-05-03 07:51:48] 2026-05-03 05:51:14,629 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 07:51:48] 2026-05-03 05:51:31,943 | INFO     | PID=4052978 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-03 07:51:48] 2026-05-03 05:51:31,943 | INFO     | .. there are 24 such processes running
[2026-05-03 07:51:48] 2026-05-03 05:51:31,947 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 07:51:48] 2026-05-03 05:51:31,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 07:51:48] 2026-05-03 05:51:31,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 07:51:48] 2026-05-03 05:51:40,723 | INFO     | [monitor] cgroup control has ended
[2026-05-03 07:51:48] 2026-05-03 05:51:42,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22779284698944)>', '<ExcThread(monitor, started 22779054540544)>']
[2026-05-03 07:51:48] 2026-05-03 05:51:43,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 07:51:48] 2026-05-03 05:51:43,002 | INFO     | [monitor] control thread has ended
[2026-05-03 07:51:48] 2026-05-03 05:51:47,308 | INFO     | all workflow threads have been joined
[2026-05-03 07:51:48] 2026-05-03 05:51:47,308 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 07:51:48] 2026-05-03 05:51:47,308 | INFO     | traces error code: 0
[2026-05-03 07:51:48] 2026-05-03 05:51:47,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 07:51:48] 2026-05-03 05:51:47,454 [wrapper] ==== pilot stdout END ====
[2026-05-03 07:51:48] 2026-05-03 05:51:47,461 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 07:51:48] 2026-05-03 05:51:47,465 [wrapper] pilotpid: 4052978
[2026-05-03 07:51:48] 2026-05-03 05:51:47,468 [wrapper] Pilot exit status: 0
[2026-05-03 07:51:48] 2026-05-03 05:51:47,510 [wrapper] pandaids: 7119482594 7119482594
[2026-05-03 07:51:48] 2026-05-03 05:51:47,729 [wrapper] cleanup supervisor_pilot  197020 4052979
[2026-05-03 07:51:48] 2026-05-03 05:51:47,738 [wrapper] Test setup, not cleaning
[2026-05-03 07:51:48] 2026-05-03 05:51:47,753 [wrapper] apfmon messages muted
[2026-05-03 07:51:48] 2026-05-03 05:51:47,757 [wrapper] ==== wrapper stdout END ====
[2026-05-03 07:51:48] 2026-05-03 05:51:47,761 [wrapper] ==== wrapper stderr END ====
[2026-05-03 07:51:48]  *** Error codes and diagnostics ***
[2026-05-03 07:51:48]     "exeErrorCode": 0,
[2026-05-03 07:51:48]     "pilotErrorCode": 0,
[2026-05-03 07:51:48]  *** Listing of results directory ***
[2026-05-03 07:51:48] total 2385424
[2026-05-03 07:51:48] drwx------. 5 boinc boinc       4096 Apr 22 11:13 pilot3
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc     683926 Apr 29 23:28 pilot3.tar.gz
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc       5631 Apr 29 23:33 queuedata.json
[2026-05-03 07:51:48] -rwx------. 1 boinc boinc      36322 Apr 29 23:36 runpilot2-wrapper.sh
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc        100 May  3 05:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 07:51:48] -rwxr-xr-x. 1 boinc boinc       7986 May  3 05:08 run_atlas
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc        105 May  3 05:08 job.xml
[2026-05-03 07:51:48] -rw-r--r--. 3 boinc boinc 1145545236 May  3 05:09 EVNT.49888779._000004.pool.root.1
[2026-05-03 07:51:48] -rw-r--r--. 3 boinc boinc 1145545236 May  3 05:09 ATLAS.root_0
[2026-05-03 07:51:48] -rw-r--r--. 2 boinc boinc      15667 May  3 05:09 start_atlas.sh
[2026-05-03 07:51:48] drwxrwx--x. 2 boinc boinc       4096 May  3 05:09 shared
[2026-05-03 07:51:48] -rw-r--r--. 2 boinc boinc     697420 May  3 05:09 input.tar.gz
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc          0 May  3 05:09 boinc_lockfile
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc    1508687 May  3 05:09 agis_ddmendpoints.agis.ALL.json
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc       2586 May  3 05:39 pandaJob.out
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc    1002964 May  3 05:39 agis_schedconf.cvmfs.json
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc        443 May  3 05:39 workernode_map.json
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc       6548 May  3 06:09 init_data.xml
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc  145302976 May  3 07:50 HITS.49888781._000436.pool.root.1
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc        488 May  3 07:50 boinc_task_state.xml
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc       1018 May  3 07:50 memory_monitor_summary.json
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc     326789 May  3 07:50 log.49888781._000436.job.log.tgz.1
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc       6350 May  3 07:50 heartbeat_new.json
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc       6241 May  3 07:50 heartbeat.json
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc         96 May  3 07:51 pilot_heartbeat.json
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc       8192 May  3 07:51 boinc_mmap_file
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc         27 May  3 07:51 wrapper_checkpoint.txt
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc       4909 May  3 07:51 pilotlog.txt
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc     738286 May  3 07:51 log.49888781._000436.job.log.1
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc        357 May  3 07:51 output.list
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc        410 May  3 07:51 runtime_log
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc    1085440 May  3 07:51 result.tar.gz
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc       8921 May  3 07:51 runtime_log.err
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc        788 May  3 07:51 79daba752a45.diag
[2026-05-03 07:51:48] -rw-r--r--. 1 boinc boinc      23135 May  3 07:51 stderr.txt
[2026-05-03 07:51:48] HITS file was successfully produced:
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc 145302976 May  3 07:50 shared/HITS.pool.root.1
[2026-05-03 07:51:48]  *** Contents of shared directory: ***
[2026-05-03 07:51:48] total 1262368
[2026-05-03 07:51:48] -rw-r--r--. 3 boinc boinc 1145545236 May  3 05:09 ATLAS.root_0
[2026-05-03 07:51:48] -rw-r--r--. 2 boinc boinc      15667 May  3 05:09 start_atlas.sh
[2026-05-03 07:51:48] -rw-r--r--. 2 boinc boinc     697420 May  3 05:09 input.tar.gz
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc  145302976 May  3 07:50 HITS.pool.root.1
[2026-05-03 07:51:48] -rw-------. 1 boinc boinc    1085440 May  3 07:51 result.tar.gz
07:51:49 (4048865): run_atlas exited; CPU time 29416.431023
07:51:49 (4048865): called boinc_finish(0)

</stderr_txt>
]]>

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