Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:38:44 (352): wrapper (7.7.26015): starting
00:38:44 (352): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 00:38:44] Arguments: --nthreads 8
[2026-04-30 00:38:44] Threads: 8
[2026-04-30 00:38:44] Checking for CVMFS
[2026-04-30 00:38:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 00:38:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 00:38:44] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 00:38:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 00:38:45] 2.11.2.0 2379 20492 98144 159023 2 202 18914425 25165825 358 130560 0 6959401 99.871 2913106 4237 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-30 00:38:45] CVMFS is ok
[2026-04-30 00:38:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 00:38:45] Checking for apptainer binary...
[2026-04-30 00:38:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 00:38:45] Running /usr/bin/apptainer --version
[2026-04-30 00:38:45] apptainer version 1.3.2-1.el7
[2026-04-30 00:38:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 00:38:46] cg-vwn406.simple-grid.lan
[2026-04-30 00:38:46] apptainer works
[2026-04-30 00:38:46] Set ATHENA_PROC_NUMBER=8
[2026-04-30 00:38:46] Set ATHENA_CORE_NUMBER=8
[2026-04-30 00:38:46] Starting ATLAS job with PandaID=7118383173
[2026-04-30 00:38:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 05:58:55]  *** The last 200 lines of the pilot log: ***
[2026-04-30 05:58:55] 2026-04-30 03:58:09,604 | INFO     | job 7118383173 has finished - writing final server update
[2026-04-30 05:58:55] 2026-04-30 03:58:09,604 | INFO     | total number of processed events: 400 (read)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,606 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7118383173/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,607 | INFO     | extracted standard info from prmon json
[2026-04-30 05:58:55] 2026-04-30 03:58:09,607 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 05:58:55] 2026-04-30 03:58:09,607 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 05:58:55] 2026-04-30 03:58:09,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 05:58:55] 2026-04-30 03:58:09,614 | INFO     | fitting pss+swap vs Time
[2026-04-30 05:58:55] 2026-04-30 03:58:09,614 | INFO     | sum of square deviations: 9599817202.5
[2026-04-30 05:58:55] 2026-04-30 03:58:09,618 | INFO     | sum of deviations: -55685736302.99999
[2026-04-30 05:58:55] 2026-04-30 03:58:09,618 | INFO     | mean x (centered): 0.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,618 | INFO     | mean y: 2534523.9299363056
[2026-04-30 05:58:55] 2026-04-30 03:58:09,618 | INFO     | intersect: 2534523.9299363056
[2026-04-30 05:58:55] 2026-04-30 03:58:09,619 | INFO     | chi2: 3.3049790871184417
[2026-04-30 05:58:55] 2026-04-30 03:58:09,619 | INFO     | sum of square deviations: 9148487810.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,623 | INFO     | sum of deviations: -12311919140.000006
[2026-04-30 05:58:55] 2026-04-30 03:58:09,623 | INFO     | mean x (centered): 0.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,623 | INFO     | mean y: 2549040.207119741
[2026-04-30 05:58:55] 2026-04-30 03:58:09,623 | INFO     | intersect: 2549040.207119741
[2026-04-30 05:58:55] 2026-04-30 03:58:09,624 | INFO     | chi2: 1.7101697020629845
[2026-04-30 05:58:55] 2026-04-30 03:58:09,624 | INFO     | current chi2=1.7101697020629845 (change=48.25474966759762 %)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,624 | INFO     | sum of square deviations: 8711530780.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,628 | INFO     | sum of deviations: -12344100635.5
[2026-04-30 05:58:55] 2026-04-30 03:58:09,628 | INFO     | mean x (centered): 0.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,628 | INFO     | mean y: 2549028.976973684
[2026-04-30 05:58:55] 2026-04-30 03:58:09,628 | INFO     | intersect: 2549028.976973684
[2026-04-30 05:58:55] 2026-04-30 03:58:09,629 | INFO     | chi2: 1.7094632352812593
[2026-04-30 05:58:55] 2026-04-30 03:58:09,629 | INFO     | current chi2=1.7094632352812593 (change=0.04130974726501891 %)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,629 | INFO     | right removable region: 303
[2026-04-30 05:58:55] 2026-04-30 03:58:09,630 | INFO     | sum of square deviations: 9148487810.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,633 | INFO     | sum of deviations: -104610154282.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,633 | INFO     | mean x (centered): 0.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,633 | INFO     | mean y: 2550936.805825243
[2026-04-30 05:58:55] 2026-04-30 03:58:09,633 | INFO     | intersect: 2550936.805825243
[2026-04-30 05:58:55] 2026-04-30 03:58:09,634 | INFO     | chi2: 1.8614785469017083
[2026-04-30 05:58:55] 2026-04-30 03:58:09,634 | INFO     | current chi2=1.8614785469017083 (change=43.67654082420528 %)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,635 | INFO     | sum of square deviations: 8711530780.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,638 | INFO     | sum of deviations: -101911360806.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,638 | INFO     | mean x (centered): 0.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,638 | INFO     | mean y: 2549973.789473684
[2026-04-30 05:58:55] 2026-04-30 03:58:09,638 | INFO     | intersect: 2549973.789473684
[2026-04-30 05:58:55] 2026-04-30 03:58:09,639 | INFO     | chi2: 1.8442413717888146
[2026-04-30 05:58:55] 2026-04-30 03:58:09,639 | INFO     | current chi2=1.8442413717888146 (change=0.9259937559626286 %)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,639 | INFO     | left removable region: 10
[2026-04-30 05:58:55] 2026-04-30 03:58:09,640 | INFO     | sum of square deviations: 7799669962.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,643 | INFO     | sum of deviations: -58340526819.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,643 | INFO     | mean x (centered): 0.0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,643 | INFO     | mean y: 2565551.6040955633
[2026-04-30 05:58:55] 2026-04-30 03:58:09,643 | INFO     | intersect: 2565551.6040955633
[2026-04-30 05:58:55] 2026-04-30 03:58:09,644 | INFO     | chi2: 0.2143325553709153
[2026-04-30 05:58:55] 2026-04-30 03:58:09,644 | INFO     | current memory leak: -7.48 B/s (using 293 data points, chi2=0.21)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,645 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,645 | INFO     | ..............................
[2026-04-30 05:58:55] 2026-04-30 03:58:09,645 | INFO     | . Timing measurements:
[2026-04-30 05:58:55] 2026-04-30 03:58:09,645 | INFO     | . get job = 0 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,645 | INFO     | . initial setup = 7 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,646 | INFO     | . payload setup = 14 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,646 | INFO     | . stage-in = 0 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,646 | INFO     | . payload execution = 19104 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,646 | INFO     | . stage-out = 4 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,646 | INFO     | . log creation = 1 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,646 | INFO     | ..............................
[2026-04-30 05:58:55] 2026-04-30 03:58:09,771 | INFO     | 
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | job summary report
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | --------------------------------------------------
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | PanDA job id: 7118383173
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | task id: 49863840
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | errors: (none)
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | pilot state: finished 
[2026-04-30 05:58:55] 2026-04-30 03:58:09,772 | INFO     | transexitcode: 0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | exeerrorcode: 0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | exeerrordiag: 
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | exitcode: 0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | exitmsg: OK
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | cpuconsumptiontime: 78681 s
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | nevents: 400
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | neventsw: 0
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | pid: 9305
[2026-04-30 05:58:55] 2026-04-30 03:58:09,773 | INFO     | pgrp: 9305
[2026-04-30 05:58:55] 2026-04-30 03:58:09,774 | INFO     | corecount: 8
[2026-04-30 05:58:55] 2026-04-30 03:58:09,774 | INFO     | event service: False
[2026-04-30 05:58:55] 2026-04-30 03:58:09,774 | INFO     | sizes: {0: 2280070, 1: 2282556, 12: 2282556, 19123: 2315619, 19127: 2324617, 19128: 2324995}
[2026-04-30 05:58:55] 2026-04-30 03:58:09,774 | INFO     | --------------------------------------------------
[2026-04-30 05:58:55] 2026-04-30 03:58:09,774 | INFO     | 
[2026-04-30 05:58:55] 2026-04-30 03:58:09,774 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-04-30 05:58:55] 2026-04-30 03:58:10,249 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,249 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,249 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,250 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,252 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 05:58:55] 2026-04-30 03:58:10,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,253 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 05:58:55] 2026-04-30 03:58:10,253 | INFO     | job 7118383173 has completed (purged errors)
[2026-04-30 05:58:55] 2026-04-30 03:58:10,253 | INFO     | overall cleanup function is called
[2026-04-30 05:58:55] 2026-04-30 03:58:10,317 | INFO     | PID=4607 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-30 05:58:55] 2026-04-30 03:58:10,318 | INFO     | .. there are 2 such processes running
[2026-04-30 05:58:55] 2026-04-30 03:58:11,262 | INFO     | --- collectZombieJob: --- 10, [9305]
[2026-04-30 05:58:55] 2026-04-30 03:58:11,263 | INFO     | zombie collector waiting for pid 9305
[2026-04-30 05:58:55] 2026-04-30 03:58:11,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 05:58:55] 2026-04-30 03:58:11,263 | INFO     | collected zombie processes
[2026-04-30 05:58:55] 2026-04-30 03:58:11,263 | INFO     | will attempt to kill all subprocesses of pid=9305
[2026-04-30 05:58:55] 2026-04-30 03:58:11,321 | INFO     | process IDs to be killed: [9305] (in reverse order)
[2026-04-30 05:58:55] 2026-04-30 03:58:12,254 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 05:58:55] 2026-04-30 03:58:12,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 05:58:55] 2026-04-30 03:58:12,257 | INFO     | did not find any defunct processes belonging to 9305
[2026-04-30 05:58:55] 2026-04-30 03:58:12,258 | INFO     | did not find any defunct processes belonging to 9305
[2026-04-30 05:58:55] 2026-04-30 03:58:12,259 | INFO     | Ready for new job
[2026-04-30 05:58:55] 2026-04-30 03:58:12,261 | INFO     | ***************************************
[2026-04-30 05:58:55] 2026-04-30 03:58:12,261 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 05:58:55] 2026-04-30 03:58:12,261 | INFO     | ***************************************
[2026-04-30 05:58:55] 2026-04-30 03:58:12,261 | INFO     | 
[2026-04-30 05:58:55] 2026-04-30 03:58:12,262 | INFO     | pilot is running in a VM
[2026-04-30 05:58:55] 2026-04-30 03:58:12,262 | INFO     | architecture information:
[2026-04-30 05:58:55] 2026-04-30 03:58:12,270 | INFO     | executing command: cat /etc/os-release
[2026-04-30 05:58:55] 2026-04-30 03:58:12,491 | INFO     | cat /etc/os-release:
[2026-04-30 05:58:55] NAME="CentOS Linux"
[2026-04-30 05:58:55] VERSION="7 (Core)"
[2026-04-30 05:58:55] ID="centos"
[2026-04-30 05:58:55] ID_LIKE="rhel fedora"
[2026-04-30 05:58:55] VERSION_ID="7"
[2026-04-30 05:58:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 05:58:55] ANSI_COLOR="0;31"
[2026-04-30 05:58:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 05:58:55] HOME_URL="https://www.centos.org/"
[2026-04-30 05:58:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 05:58:55] 
[2026-04-30 05:58:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 05:58:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 05:58:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 05:58:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 05:58:55] 
[2026-04-30 05:58:55] 2026-04-30 03:58:12,491 | INFO     | ***************************************
[2026-04-30 05:58:55] 2026-04-30 03:58:12,995 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-04-30 05:58:55] 2026-04-30 03:58:13,122 | INFO     | sufficient remaining disk space (497307090944 B)
[2026-04-30 05:58:55] 2026-04-30 03:58:13,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 05:58:55] 2026-04-30 03:58:13,123 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 05:58:55] 2026-04-30 03:58:13,123 | INFO     | update_server=False
[2026-04-30 05:58:55] 2026-04-30 03:58:13,123 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 05:58:55] 2026-04-30 03:58:13,127 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 05:58:55] 2026-04-30 03:58:13,233 | INFO     | all job control threads have been joined
[2026-04-30 05:58:55] 2026-04-30 03:58:13,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 05:58:55] 2026-04-30 03:58:13,377 | INFO     | aborting loop
[2026-04-30 05:58:55] 2026-04-30 03:58:13,667 | INFO     | all payload control threads have been joined
[2026-04-30 05:58:55] 2026-04-30 03:58:14,058 | INFO     | all data control threads have been joined
[2026-04-30 05:58:55] 2026-04-30 03:58:14,129 | INFO     | [job] retrieve thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,240 | INFO     | [job] control thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,244 | INFO     | [payload] validate_post thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,383 | INFO     | [job] job monitor thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,438 | INFO     | [job] validate thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,513 | INFO     | [data] copytool_in thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,673 | INFO     | [payload] control thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:14,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 05:58:55] 2026-04-30 03:58:15,064 | INFO     | [data] control thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:15,136 | INFO     | [data] copytool_out thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:15,213 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:15,224 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:15,258 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:15,475 | INFO     | [payload] failed_post thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:15,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 05:58:55] 2026-04-30 03:58:15,789 | INFO     | [job] queue monitor thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:19,623 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:23,260 | INFO     | job.realtimelogging is not enabled
[2026-04-30 05:58:55] 2026-04-30 03:58:24,266 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 05:58:55] 2026-04-30 03:58:42,450 | INFO     | PID=4607 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-30 05:58:55] 2026-04-30 03:58:42,451 | INFO     | .. there are 2 such processes running
[2026-04-30 05:58:55] 2026-04-30 03:58:42,458 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 05:58:55] 2026-04-30 03:58:42,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 05:58:55] 2026-04-30 03:58:42,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 05:58:55] 2026-04-30 03:58:42,885 | INFO     | [monitor] cgroup control has ended
[2026-04-30 05:58:55] 2026-04-30 03:58:44,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767856297792)>', '<ExcThread(monitor, started 139766624417536)>']
[2026-04-30 05:58:55] 2026-04-30 03:58:45,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 05:58:55] 2026-04-30 03:58:45,476 | INFO     | [monitor] control thread has ended
[2026-04-30 05:58:55] 2026-04-30 03:58:49,621 | INFO     | all workflow threads have been joined
[2026-04-30 05:58:55] 2026-04-30 03:58:49,622 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 05:58:55] 2026-04-30 03:58:49,622 | INFO     | traces error code: 0
[2026-04-30 05:58:55] 2026-04-30 03:58:49,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 05:58:55] 2026-04-30 03:58:50,068 [wrapper] ==== pilot stdout END ====
[2026-04-30 05:58:55] 2026-04-30 03:58:50,131 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 05:58:55] 2026-04-30 03:58:50,246 [wrapper] pilotpid: 4607
[2026-04-30 05:58:55] 2026-04-30 03:58:50,353 [wrapper] Pilot exit status: 0
[2026-04-30 05:58:55] 2026-04-30 03:58:50,857 [wrapper] pandaids: 7118383173
[2026-04-30 05:58:55] 2026-04-30 03:58:52,138 [wrapper] cleanup supervisor_pilot 29598 4608
[2026-04-30 05:58:55] 2026-04-30 03:58:52,186 [wrapper] Test setup, not cleaning
[2026-04-30 05:58:55] 2026-04-30 03:58:52,326 [wrapper] apfmon messages muted
[2026-04-30 05:58:55] 2026-04-30 03:58:52,427 [wrapper] ==== wrapper stdout END ====
[2026-04-30 05:58:55] 2026-04-30 03:58:52,533 [wrapper] ==== wrapper stderr END ====
[2026-04-30 05:58:55]  *** Error codes and diagnostics ***
[2026-04-30 05:58:55]     "exeErrorCode": 0,
[2026-04-30 05:58:55]     "pilotErrorCode": 0,
[2026-04-30 05:58:55]  *** Listing of results directory ***
[2026-04-30 05:58:55] total 475432
[2026-04-30 05:58:55] -rwx------. 1 boinc boinc     36322 Apr 29 07:45 runpilot2-wrapper.sh
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc      5631 Apr 29 20:31 queuedata.json
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc    683926 Apr 29 20:31 pilot3.tar.gz
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc       100 Apr 30 00:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 05:58:55] -rwxr-xr-x. 1 boinc boinc      7986 Apr 30 00:38 run_atlas
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc       105 Apr 30 00:38 job.xml
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc      6307 Apr 30 00:38 init_data.xml
[2026-04-30 05:58:55] -rw-r--r--. 2 boinc boinc 260458116 Apr 30 00:38 EVNT.49863838._000077.pool.root.1
[2026-04-30 05:58:55] -rw-r--r--. 2 boinc boinc     15667 Apr 30 00:38 start_atlas.sh
[2026-04-30 05:58:55] drwxrwx--x. 2 boinc boinc        68 Apr 30 00:38 shared
[2026-04-30 05:58:55] -rw-r--r--. 2 boinc boinc    697422 Apr 30 00:38 input.tar.gz
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc         0 Apr 30 00:38 boinc_lockfile
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc      2590 Apr 30 00:38 pandaJob.out
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc   1001901 Apr 30 00:39 agis_schedconf.cvmfs.json
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc       415 Apr 30 00:39 workernode_map.json
[2026-04-30 05:58:55] drwx------. 5 boinc boinc      4096 Apr 30 00:39 pilot3
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc 217893402 Apr 30 05:56 HITS.49863840._001912.pool.root.1
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc       488 Apr 30 05:56 boinc_task_state.xml
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc      1016 Apr 30 05:58 memory_monitor_summary.json
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc   1512704 Apr 30 05:58 agis_ddmendpoints.agis.ALL.json
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc    427875 Apr 30 05:58 log.49863840._001912.job.log.tgz.1
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc      6328 Apr 30 05:58 heartbeat_new.json
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc      6219 Apr 30 05:58 heartbeat.json
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc        95 Apr 30 05:58 pilot_heartbeat.json
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc      4954 Apr 30 05:58 pilotlog.txt
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc      8192 Apr 30 05:58 boinc_mmap_file
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc        28 Apr 30 05:58 wrapper_checkpoint.txt
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc   1751368 Apr 30 05:58 log.49863840._001912.job.log.1
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc       357 Apr 30 05:58 output.list
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc       410 Apr 30 05:58 runtime_log
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc   2201600 Apr 30 05:58 result.tar.gz
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc      8439 Apr 30 05:58 runtime_log.err
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc       655 Apr 30 05:58 9b038dc6c6c6.diag
[2026-04-30 05:58:55] -rw-r--r--. 1 boinc boinc     20672 Apr 30 05:58 stderr.txt
[2026-04-30 05:58:55] HITS file was successfully produced:
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc 217893402 Apr 30 05:56 shared/HITS.pool.root.1
[2026-04-30 05:58:55]  *** Contents of shared directory: ***
[2026-04-30 05:58:55] total 469996
[2026-04-30 05:58:55] -rw-r--r--. 2 boinc boinc 260458116 Apr 30 00:38 ATLAS.root_0
[2026-04-30 05:58:55] -rw-r--r--. 2 boinc boinc     15667 Apr 30 00:38 start_atlas.sh
[2026-04-30 05:58:55] -rw-r--r--. 2 boinc boinc    697422 Apr 30 00:38 input.tar.gz
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc 217893402 Apr 30 05:56 HITS.pool.root.1
[2026-04-30 05:58:55] -rw-------. 1 boinc boinc   2201600 Apr 30 05:58 result.tar.gz
05:58:56 (352): run_atlas exited; CPU time 78834.646034
05:58:56 (352): called boinc_finish(0)

</stderr_txt>
]]>

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