Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:02:56 (3471818): wrapper (7.7.26015): starting
09:02:56 (3471818): wrapper: running run_atlas (--nthreads 2)
[2026-04-30 09:02:56] Arguments: --nthreads 2
[2026-04-30 09:02:56] Threads: 2
[2026-04-30 09:02:56] Checking for CVMFS
[2026-04-30 09:02:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 09:03:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 09:03:01] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 09:03:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 09:03:01] 2.13.3.0 3454996 820 44524 159036 0 50 3303823 4096001 0 130560 0 65922 90.901 680550 1322 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
[2026-04-30 09:03:01] CVMFS is ok
[2026-04-30 09:03:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 09:03:01] Checking for apptainer binary...
[2026-04-30 09:03:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 09:03:01] Running /usr/bin/apptainer --version
[2026-04-30 09:03:01] apptainer version 1.4.5
[2026-04-30 09:03:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 09:03:02] ahanllin03
[2026-04-30 09:03:02] apptainer works
[2026-04-30 09:03:02] Set ATHENA_PROC_NUMBER=2
[2026-04-30 09:03:02] Set ATHENA_CORE_NUMBER=2
[2026-04-30 09:03:02] Starting ATLAS job with PandaID=7119347457
[2026-04-30 09:03:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 03:31:29]  *** The last 200 lines of the pilot log: ***
[2026-05-01 03:31:30] 2026-05-01 01:30:45,430 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-05-01 03:31:30] 2026-05-01 01:30:45,431 | INFO     | this job has now completed (state=finished)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,431 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,431 | INFO     | log transfer has been attempted: DONE
[2026-05-01 03:31:30] 2026-05-01 01:30:45,431 | INFO     | job 7119347457 has finished - writing final server update
[2026-05-01 03:31:30] 2026-05-01 01:30:45,432 | INFO     | total number of processed events: 400 (read)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,433 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7119347457/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,433 | INFO     | extracted standard info from prmon json
[2026-05-01 03:31:30] 2026-05-01 01:30:45,433 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 03:31:30] 2026-05-01 01:30:45,434 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 03:31:30] 2026-05-01 01:30:45,434 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 03:31:30] 2026-05-01 01:30:45,476 | INFO     | fitting pss+swap vs Time
[2026-05-01 03:31:30] 2026-05-01 01:30:45,479 | INFO     | sum of square deviations: 400462355040.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,609 | INFO     | sum of deviations: 32528730985.000023
[2026-05-01 03:31:30] 2026-05-01 01:30:45,610 | INFO     | mean x (centered): 0.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,610 | INFO     | mean y: 2272552.36271809
[2026-05-01 03:31:30] 2026-05-01 01:30:45,610 | INFO     | intersect: 2272552.36271809
[2026-05-01 03:31:30] 2026-05-01 01:30:45,614 | INFO     | chi2: 2.5248042760235583
[2026-05-01 03:31:30] 2026-05-01 01:30:45,617 | INFO     | sum of square deviations: 394971628835.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,713 | INFO     | sum of deviations: 92270796549.00002
[2026-05-01 03:31:30] 2026-05-01 01:30:45,713 | INFO     | mean x (centered): 0.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,714 | INFO     | mean y: 2274205.3911439115
[2026-05-01 03:31:30] 2026-05-01 01:30:45,714 | INFO     | intersect: 2274205.3911439115
[2026-05-01 03:31:30] 2026-05-01 01:30:45,718 | INFO     | chi2: 1.873645300368463
[2026-05-01 03:31:30] 2026-05-01 01:30:45,718 | INFO     | current chi2=1.873645300368463 (change=25.790473417632136 %)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,721 | INFO     | sum of square deviations: 389531322180.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,823 | INFO     | sum of deviations: 90657170380.99998
[2026-05-01 03:31:30] 2026-05-01 01:30:45,824 | INFO     | mean x (centered): 0.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,824 | INFO     | mean y: 2274160.1584800743
[2026-05-01 03:31:30] 2026-05-01 01:30:45,824 | INFO     | intersect: 2274160.1584800743
[2026-05-01 03:31:30] 2026-05-01 01:30:45,828 | INFO     | chi2: 1.8736099127825205
[2026-05-01 03:31:30] 2026-05-01 01:30:45,828 | INFO     | current chi2=1.8736099127825205 (change=0.0018887025167196741 %)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,828 | INFO     | right removable region: 1078
[2026-05-01 03:31:30] 2026-05-01 01:30:45,831 | INFO     | sum of square deviations: 394971628835.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,935 | INFO     | sum of deviations: -119002490927.00002
[2026-05-01 03:31:30] 2026-05-01 01:30:45,936 | INFO     | mean x (centered): 0.0
[2026-05-01 03:31:30] 2026-05-01 01:30:45,936 | INFO     | mean y: 2276751.988929889
[2026-05-01 03:31:30] 2026-05-01 01:30:45,936 | INFO     | intersect: 2276751.988929889
[2026-05-01 03:31:30] 2026-05-01 01:30:45,940 | INFO     | chi2: 1.1015369471827627
[2026-05-01 03:31:30] 2026-05-01 01:30:45,940 | INFO     | current chi2=1.1015369471827627 (change=56.37139252165602 %)
[2026-05-01 03:31:30] 2026-05-01 01:30:45,943 | INFO     | sum of square deviations: 389531322180.0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,046 | INFO     | sum of deviations: -94255269410.99997
[2026-05-01 03:31:30] 2026-05-01 01:30:46,047 | INFO     | mean x (centered): 0.0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,047 | INFO     | mean y: 2276056.34012975
[2026-05-01 03:31:30] 2026-05-01 01:30:46,047 | INFO     | intersect: 2276056.34012975
[2026-05-01 03:31:30] 2026-05-01 01:30:46,051 | INFO     | chi2: 1.0548265276142397
[2026-05-01 03:31:30] 2026-05-01 01:30:46,051 | INFO     | current chi2=1.0548265276142397 (change=4.240476879871107 %)
[2026-05-01 03:31:30] 2026-05-01 01:30:46,051 | INFO     | left removable region: 10
[2026-05-01 03:31:30] 2026-05-01 01:30:46,054 | INFO     | sum of square deviations: 377738978287.0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,156 | INFO     | sum of deviations: -35706683548.00009
[2026-05-01 03:31:30] 2026-05-01 01:30:46,156 | INFO     | mean x (centered): 0.0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,157 | INFO     | mean y: 2277706.0992509364
[2026-05-01 03:31:30] 2026-05-01 01:30:46,157 | INFO     | intersect: 2277706.0992509364
[2026-05-01 03:31:30] 2026-05-01 01:30:46,160 | INFO     | chi2: 0.40005480760187456
[2026-05-01 03:31:30] 2026-05-01 01:30:46,161 | INFO     | current memory leak: -0.09 B/s (using 1068 data points, chi2=0.40)
[2026-05-01 03:31:30] 2026-05-01 01:30:46,163 | INFO     | could have reported an average CPU frequency of 3192 MHz (40 samples)
[2026-05-01 03:31:30] 2026-05-01 01:30:46,163 | INFO     | ..............................
[2026-05-01 03:31:30] 2026-05-01 01:30:46,163 | INFO     | . Timing measurements:
[2026-05-01 03:31:30] 2026-05-01 01:30:46,163 | INFO     | . get job = 0 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,163 | INFO     | . initial setup = 7 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,163 | INFO     | . payload setup = 14 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,164 | INFO     | . stage-in = 0 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,164 | INFO     | . payload execution = 66397 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,164 | INFO     | . stage-out = 6 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,164 | INFO     | . log creation = 0 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,164 | INFO     | ..............................
[2026-05-01 03:31:30] 2026-05-01 01:30:46,379 | INFO     | 
[2026-05-01 03:31:30] 2026-05-01 01:30:46,379 | INFO     | job summary report
[2026-05-01 03:31:30] 2026-05-01 01:30:46,379 | INFO     | --------------------------------------------------
[2026-05-01 03:31:30] 2026-05-01 01:30:46,379 | INFO     | PanDA job id: 7119347457
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | task id: 49863851
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | errors: (none)
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | pilot state: finished 
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | transexitcode: 0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | exeerrorcode: 0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,380 | INFO     | exeerrordiag: 
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | exitcode: 0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | exitmsg: OK
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | cpuconsumptiontime: 129087 s
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | nevents: 400
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | neventsw: 0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | pid: 3480217
[2026-05-01 03:31:30] 2026-05-01 01:30:46,381 | INFO     | pgrp: 3480217
[2026-05-01 03:31:30] 2026-05-01 01:30:46,382 | INFO     | corecount: 2
[2026-05-01 03:31:30] 2026-05-01 01:30:46,382 | INFO     | event service: False
[2026-05-01 03:31:30] 2026-05-01 01:30:46,382 | INFO     | sizes: {0: 2280745, 1: 2282574, 66416: 2337791, 66424: 2342674, 66425: 2342730, 66432: 2342924}
[2026-05-01 03:31:30] 2026-05-01 01:30:46,382 | INFO     | --------------------------------------------------
[2026-05-01 03:31:30] 2026-05-01 01:30:46,382 | INFO     | 
[2026-05-01 03:31:30] 2026-05-01 01:30:46,382 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-05-01 03:31:30] 2026-05-01 01:30:46,408 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,408 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,411 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 03:31:30] 2026-05-01 01:30:46,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,411 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 03:31:30] 2026-05-01 01:30:46,412 | INFO     | job 7119347457 has completed (purged errors)
[2026-05-01 03:31:30] 2026-05-01 01:30:46,412 | INFO     | overall cleanup function is called
[2026-05-01 03:31:30] 2026-05-01 01:30:47,420 | INFO     | --- collectZombieJob: --- 10, [3480217]
[2026-05-01 03:31:30] 2026-05-01 01:30:47,420 | INFO     | zombie collector waiting for pid 3480217
[2026-05-01 03:31:30] 2026-05-01 01:30:47,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 03:31:30] 2026-05-01 01:30:47,421 | INFO     | collected zombie processes
[2026-05-01 03:31:30] 2026-05-01 01:30:47,421 | INFO     | will attempt to kill all subprocesses of pid=3480217
[2026-05-01 03:31:30] 2026-05-01 01:30:47,472 | INFO     | process IDs to be killed: [3480217] (in reverse order)
[2026-05-01 03:31:30] 2026-05-01 01:30:47,513 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 03:31:30] 2026-05-01 01:30:47,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 03:31:30] 2026-05-01 01:30:47,516 | INFO     | did not find any defunct processes belonging to 3480217
[2026-05-01 03:31:30] 2026-05-01 01:30:47,518 | INFO     | did not find any defunct processes belonging to 3480217
[2026-05-01 03:31:30] 2026-05-01 01:30:47,518 | INFO     | Ready for new job
[2026-05-01 03:31:30] 2026-05-01 01:30:47,522 | INFO     | ***************************************
[2026-05-01 03:31:30] 2026-05-01 01:30:47,522 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 03:31:30] 2026-05-01 01:30:47,523 | INFO     | ***************************************
[2026-05-01 03:31:30] 2026-05-01 01:30:47,523 | INFO     | 
[2026-05-01 03:31:30] 2026-05-01 01:30:47,523 | INFO     | pilot is running in a VM
[2026-05-01 03:31:30] 2026-05-01 01:30:47,523 | INFO     | architecture information:
[2026-05-01 03:31:30] 2026-05-01 01:30:47,524 | INFO     | executing command: cat /etc/os-release
[2026-05-01 03:31:30] 2026-05-01 01:30:47,546 | INFO     | cat /etc/os-release:
[2026-05-01 03:31:30] NAME="CentOS Linux"
[2026-05-01 03:31:30] VERSION="7 (Core)"
[2026-05-01 03:31:30] ID="centos"
[2026-05-01 03:31:30] ID_LIKE="rhel fedora"
[2026-05-01 03:31:30] VERSION_ID="7"
[2026-05-01 03:31:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 03:31:30] ANSI_COLOR="0;31"
[2026-05-01 03:31:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 03:31:30] HOME_URL="https://www.centos.org/"
[2026-05-01 03:31:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 03:31:30] 
[2026-05-01 03:31:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 03:31:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 03:31:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 03:31:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 03:31:30] 
[2026-05-01 03:31:30] 2026-05-01 01:30:47,546 | INFO     | ***************************************
[2026-05-01 03:31:30] 2026-05-01 01:30:48,050 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-05-01 03:31:30] 2026-05-01 01:30:48,075 | INFO     | sufficient remaining disk space (14257487872 B)
[2026-05-01 03:31:30] 2026-05-01 01:30:48,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 03:31:30] 2026-05-01 01:30:48,076 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 03:31:30] 2026-05-01 01:30:48,076 | INFO     | update_server=False
[2026-05-01 03:31:30] 2026-05-01 01:30:48,076 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 03:31:30] 2026-05-01 01:30:48,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 03:31:30] 2026-05-01 01:30:48,310 | INFO     | all data control threads have been joined
[2026-05-01 03:31:30] 2026-05-01 01:30:48,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 03:31:30] 2026-05-01 01:30:48,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 03:31:30] 2026-05-01 01:30:48,595 | INFO     | aborting loop
[2026-05-01 03:31:30] 2026-05-01 01:30:49,009 | INFO     | all payload control threads have been joined
[2026-05-01 03:31:30] 2026-05-01 01:30:49,081 | INFO     | [job] retrieve thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,083 | INFO     | [job] queue monitor thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,096 | INFO     | [data] copytool_in thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,122 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,170 | INFO     | [job] validate thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,186 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,315 | INFO     | [data] control thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,601 | INFO     | [job] job monitor thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:49,688 | INFO     | all job control threads have been joined
[2026-05-01 03:31:30] 2026-05-01 01:30:49,771 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 03:31:30] 2026-05-01 01:30:50,014 | INFO     | [payload] control thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:50,192 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:50,277 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:50,351 | INFO     | [data] copytool_out thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:50,375 | INFO     | [payload] failed_post thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:50,479 | INFO     | [payload] validate_post thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:50,694 | INFO     | [job] control thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:30:53,777 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 03:31:30] 2026-05-01 01:31:17,677 | INFO     | PID=3475853 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 03:31:30] 2026-05-01 01:31:17,678 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 03:31:30] 2026-05-01 01:31:17,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 03:31:30] 2026-05-01 01:31:17,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 03:31:30] 2026-05-01 01:31:22,594 | INFO     | [monitor] cgroup control has ended
[2026-05-01 03:31:30] 2026-05-01 01:31:24,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134619703543616)>', '<ExcThread(monitor, started 134619206760192)>']
[2026-05-01 03:31:30] 2026-05-01 01:31:24,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 03:31:30] 2026-05-01 01:31:24,714 | INFO     | [monitor] control thread has ended
[2026-05-01 03:31:30] 2026-05-01 01:31:29,486 | INFO     | all workflow threads have been joined
[2026-05-01 03:31:30] 2026-05-01 01:31:29,486 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 03:31:30] 2026-05-01 01:31:29,487 | INFO     | traces error code: 0
[2026-05-01 03:31:30] 2026-05-01 01:31:29,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 03:31:30] 2026-05-01 01:31:29,661 [wrapper] ==== pilot stdout END ====
[2026-05-01 03:31:30] 2026-05-01 01:31:29,664 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 03:31:30] 2026-05-01 01:31:29,668 [wrapper] pilotpid: 3475853
[2026-05-01 03:31:30] 2026-05-01 01:31:29,671 [wrapper] Pilot exit status: 0
[2026-05-01 03:31:30] 2026-05-01 01:31:29,706 [wrapper] pandaids: 7119347457
[2026-05-01 03:31:30] 2026-05-01 01:31:29,733 [wrapper] cleanup supervisor_pilot 3489890 3475854
[2026-05-01 03:31:30] 2026-05-01 01:31:29,737 [wrapper] Test setup, not cleaning
[2026-05-01 03:31:30] 2026-05-01 01:31:29,741 [wrapper] apfmon messages muted
[2026-05-01 03:31:30] 2026-05-01 01:31:29,744 [wrapper] ==== wrapper stdout END ====
[2026-05-01 03:31:30] 2026-05-01 01:31:29,748 [wrapper] ==== wrapper stderr END ====
[2026-05-01 03:31:30]  *** Error codes and diagnostics ***
[2026-05-01 03:31:30]     "exeErrorCode": 0,
[2026-05-01 03:31:30]     "pilotErrorCode": 0,
[2026-05-01 03:31:30]  *** Listing of results directory ***
[2026-05-01 03:31:30] total 490264
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc    683926 Apr 29 19:18 pilot3.tar.gz
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc      5631 Apr 29 19:20 queuedata.json
[2026-05-01 03:31:30] -rwx------ 1 boinc boinc     36322 Apr 29 19:20 runpilot2-wrapper.sh
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc       100 Apr 30 09:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 03:31:30] -rwxr-xr-x 1 boinc boinc      7986 Apr 30 09:02 run_atlas
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc       105 Apr 30 09:02 job.xml
[2026-05-01 03:31:30] -rw-r--r-- 2 boinc boinc 262507809 Apr 30 09:02 EVNT.49863848._000186.pool.root.1
[2026-05-01 03:31:30] drwxrwx--x 2 boinc boinc      4096 Apr 30 09:02 shared
[2026-05-01 03:31:30] -rw-r--r-- 2 boinc boinc    697437 Apr 30 09:02 input.tar.gz
[2026-05-01 03:31:30] -rw-r--r-- 2 boinc boinc     15667 Apr 30 09:02 start_atlas.sh
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc         0 Apr 30 09:02 boinc_setup_complete
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc         0 Apr 30 09:02 boinc_lockfile
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc      2650 Apr 30 09:03 pandaJob.out
[2026-05-01 03:31:30] -rw------- 1 boinc boinc        42 Apr 30 09:03 setup.sh.local
[2026-05-01 03:31:30] -rw------- 1 boinc boinc   1001870 Apr 30 09:03 agis_schedconf.cvmfs.json
[2026-05-01 03:31:30] -rw------- 1 boinc boinc       414 Apr 30 09:03 workernode_map.json
[2026-05-01 03:31:30] drwx------ 5 boinc boinc      4096 Apr 30 09:03 pilot3
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc      6357 Apr 30 15:32 init_data.xml
[2026-05-01 03:31:30] -rw------- 1 boinc boinc 222026176 May  1 03:29 HITS.49863851._004652.pool.root.1
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc       489 May  1 03:29 boinc_task_state.xml
[2026-05-01 03:31:30] -rw------- 1 boinc boinc      1029 May  1 03:30 memory_monitor_summary.json
[2026-05-01 03:31:30] -rw------- 1 boinc boinc   1510091 May  1 03:30 agis_ddmendpoints.agis.ALL.json
[2026-05-01 03:31:30] -rw------- 1 boinc boinc    735728 May  1 03:30 log.49863851._004652.job.log.tgz.1
[2026-05-01 03:31:30] -rw------- 1 boinc boinc        95 May  1 03:30 pilot_heartbeat.json
[2026-05-01 03:31:30] -rw------- 1 boinc boinc      6342 May  1 03:30 heartbeat_new.json
[2026-05-01 03:31:30] -rw------- 1 boinc boinc      6233 May  1 03:30 heartbeat.json
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc        29 May  1 03:31 wrapper_checkpoint.txt
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc      8192 May  1 03:31 boinc_mmap_file
[2026-05-01 03:31:30] -rw------- 1 boinc boinc      4816 May  1 03:31 pilotlog.txt
[2026-05-01 03:31:30] -rw------- 1 boinc boinc   5940352 May  1 03:31 log.49863851._004652.job.log.1
[2026-05-01 03:31:30] -rw------- 1 boinc boinc       357 May  1 03:31 output.list
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc       410 May  1 03:31 runtime_log
[2026-05-01 03:31:30] -rw------- 1 boinc boinc   6696960 May  1 03:31 result.tar.gz
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc      8997 May  1 03:31 runtime_log.err
[2026-05-01 03:31:30] -rw------- 1 boinc boinc       661 May  1 03:31 3de3508bf201.diag
[2026-05-01 03:31:30] -rw-r--r-- 1 boinc boinc     20708 May  1 03:31 stderr.txt
[2026-05-01 03:31:30] HITS file was successfully produced:
[2026-05-01 03:31:30] -rw------- 1 boinc boinc 222026176 May  1 03:29 shared/HITS.pool.root.1
[2026-05-01 03:31:30]  *** Contents of shared directory: ***
[2026-05-01 03:31:30] total 480428
[2026-05-01 03:31:30] -rw-r--r-- 2 boinc boinc 262507809 Apr 30 09:02 ATLAS.root_0
[2026-05-01 03:31:30] -rw-r--r-- 2 boinc boinc    697437 Apr 30 09:02 input.tar.gz
[2026-05-01 03:31:30] -rw-r--r-- 2 boinc boinc     15667 Apr 30 09:02 start_atlas.sh
[2026-05-01 03:31:30] -rw------- 1 boinc boinc 222026176 May  1 03:29 HITS.pool.root.1
[2026-05-01 03:31:30] -rw------- 1 boinc boinc   6696960 May  1 03:31 result.tar.gz
03:31:31 (3471818): run_atlas exited; CPU time 129710.241192
03:31:31 (3471818): called boinc_finish(0)

</stderr_txt>
]]>

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