Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:51 (35304): wrapper (7.7.26015): starting
19:16:51 (35304): wrapper: running run_atlas (--nthreads 4)
[2026-04-30 19:16:51] Arguments: --nthreads 4
[2026-04-30 19:16:51] Threads: 4
[2026-04-30 19:16:51] Checking for CVMFS
[2026-04-30 19:16:51] No cvmfs_config command found, will try listing directly
[2026-04-30 19:16:51] CVMFS is ok
[2026-04-30 19:16:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 19:16:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 19:16:51] Further information can be found at the LHC@home message board.
[2026-04-30 19:16:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 19:16:51] Checking for apptainer binary...
[2026-04-30 19:16:51] which: no apptainer in ((null))
[2026-04-30 19:16:51] apptainer is not installed, using version from CVMFS
[2026-04-30 19:16:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 19:16:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/5/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2026-04-30 19:16:52] apptainer works
[2026-04-30 19:16:52] Set ATHENA_PROC_NUMBER=4
[2026-04-30 19:16:52] Set ATHENA_CORE_NUMBER=4
[2026-04-30 19:16:52] Starting ATLAS job with PandaID=7118490918
[2026-04-30 19:16:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 00:02:36]  *** The last 200 lines of the pilot log: ***
[2026-05-01 00:02:36] 2026-04-30 22:01:50,724 | INFO     | job 7118490918 has finished - writing final server update
[2026-05-01 00:02:36] 2026-04-30 22:01:50,725 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2436803/.job.ad'
[2026-05-01 00:02:36] 2026-04-30 22:01:50,725 | INFO     | total number of processed events: 400 (read)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,737 | INFO     | using path: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7118490918/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,738 | INFO     | extracted standard info from prmon json
[2026-05-01 00:02:36] 2026-04-30 22:01:50,738 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 00:02:36] 2026-04-30 22:01:50,738 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 00:02:36] 2026-04-30 22:01:50,738 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 00:02:36] 2026-04-30 22:01:50,743 | INFO     | fitting pss+swap vs Time
[2026-05-01 00:02:36] 2026-04-30 22:01:50,744 | INFO     | sum of square deviations: 6734191380.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,746 | INFO     | sum of deviations: -45692329136.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,746 | INFO     | mean x (centered): 0.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,746 | INFO     | mean y: 2357834.964157706
[2026-05-01 00:02:36] 2026-04-30 22:01:50,746 | INFO     | intersect: 2357834.964157706
[2026-05-01 00:02:36] 2026-04-30 22:01:50,747 | INFO     | chi2: 2.3022996593462777
[2026-05-01 00:02:36] 2026-04-30 22:01:50,747 | INFO     | sum of square deviations: 6378584712.5
[2026-05-01 00:02:36] 2026-04-30 22:01:50,749 | INFO     | sum of deviations: -27656531604.000004
[2026-05-01 00:02:36] 2026-04-30 22:01:50,749 | INFO     | mean x (centered): 0.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,749 | INFO     | mean y: 2365460.313868613
[2026-05-01 00:02:36] 2026-04-30 22:01:50,749 | INFO     | intersect: 2365460.313868613
[2026-05-01 00:02:36] 2026-04-30 22:01:50,750 | INFO     | chi2: 1.5176418393358466
[2026-05-01 00:02:36] 2026-04-30 22:01:50,750 | INFO     | current chi2=1.5176418393358466 (change=34.0814809586181 %)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,750 | INFO     | sum of square deviations: 6035722470.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,752 | INFO     | sum of deviations: -27390544032.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,753 | INFO     | mean x (centered): 0.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,753 | INFO     | mean y: 2365578.8513011155
[2026-05-01 00:02:36] 2026-04-30 22:01:50,753 | INFO     | intersect: 2365578.8513011155
[2026-05-01 00:02:36] 2026-04-30 22:01:50,753 | INFO     | chi2: 1.5154909147268645
[2026-05-01 00:02:36] 2026-04-30 22:01:50,753 | INFO     | current chi2=1.5154909147268645 (change=0.14172807794515158 %)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,753 | INFO     | right removable region: 268
[2026-05-01 00:02:36] 2026-04-30 22:01:50,754 | INFO     | sum of square deviations: 6378584712.5
[2026-05-01 00:02:36] 2026-04-30 22:01:50,756 | INFO     | sum of deviations: -76100441145.50003
[2026-05-01 00:02:36] 2026-04-30 22:01:50,756 | INFO     | mean x (centered): 0.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,756 | INFO     | mean y: 2370714.3540145988
[2026-05-01 00:02:36] 2026-04-30 22:01:50,756 | INFO     | intersect: 2370714.3540145988
[2026-05-01 00:02:36] 2026-04-30 22:01:50,757 | INFO     | chi2: 1.0248835979325952
[2026-05-01 00:02:36] 2026-04-30 22:01:50,757 | INFO     | current chi2=1.0248835979325952 (change=55.48435262229923 %)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,757 | INFO     | sum of square deviations: 6035722470.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,759 | INFO     | sum of deviations: -66355575458.999985
[2026-05-01 00:02:36] 2026-04-30 22:01:50,759 | INFO     | mean x (centered): 0.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,759 | INFO     | mean y: 2366368.152416357
[2026-05-01 00:02:36] 2026-04-30 22:01:50,759 | INFO     | intersect: 2366368.152416357
[2026-05-01 00:02:36] 2026-04-30 22:01:50,760 | INFO     | chi2: 1.0017095098039364
[2026-05-01 00:02:36] 2026-04-30 22:01:50,760 | INFO     | current chi2=1.0017095098039364 (change=2.261143428912886 %)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,760 | INFO     | left removable region: 10
[2026-05-01 00:02:36] 2026-04-30 22:01:50,760 | INFO     | sum of square deviations: 5325139844.5
[2026-05-01 00:02:36] 2026-04-30 22:01:50,762 | INFO     | sum of deviations: -47831425286.00001
[2026-05-01 00:02:36] 2026-04-30 22:01:50,762 | INFO     | mean x (centered): 0.0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,762 | INFO     | mean y: 2374817.8294573645
[2026-05-01 00:02:36] 2026-04-30 22:01:50,763 | INFO     | intersect: 2374817.8294573645
[2026-05-01 00:02:36] 2026-04-30 22:01:50,763 | INFO     | chi2: 0.19742977949532703
[2026-05-01 00:02:36] 2026-04-30 22:01:50,763 | INFO     | current memory leak: -8.98 B/s (using 258 data points, chi2=0.20)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | could have reported an average CPU frequency of 2449 MHz (13 samples)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | ..............................
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . Timing measurements:
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . get job = 0 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . initial setup = 23 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . payload setup = 28 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . stage-in = 0 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . payload execution = 16987 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,764 | INFO     | . stage-out = 1 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,765 | INFO     | . log creation = 0 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,765 | INFO     | ..............................
[2026-05-01 00:02:36] 2026-04-30 22:01:50,857 | INFO     | 
[2026-05-01 00:02:36] 2026-04-30 22:01:50,857 | INFO     | job summary report
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | --------------------------------------------------
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | PanDA job id: 7118490918
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | task id: 49863840
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | errors: (none)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | pilot state: finished 
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | transexitcode: 0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | exeerrorcode: 0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | exeerrordiag: 
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | exitcode: 0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | exitmsg: OK
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | cpuconsumptiontime: 63243 s
[2026-05-01 00:02:36] 2026-04-30 22:01:50,858 | INFO     | nevents: 400
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | neventsw: 0
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | pid: 44567
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | pgrp: 44567
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | corecount: 4
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | event service: False
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | sizes: {0: 2276611, 1: 2278440, 17020: 2310253, 17023: 2319273, 17025: 2319329, 17028: 2319523}
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | --------------------------------------------------
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | 
[2026-05-01 00:02:36] 2026-04-30 22:01:50,859 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/5
[2026-05-01 00:02:36] 2026-04-30 22:01:50,880 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,880 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | job 7118490918 has completed (purged errors)
[2026-05-01 00:02:36] 2026-04-30 22:01:50,882 | INFO     | overall cleanup function is called
[2026-05-01 00:02:36] 2026-04-30 22:01:51,890 | INFO     | --- collectZombieJob: --- 10, [44567]
[2026-05-01 00:02:36] 2026-04-30 22:01:51,890 | INFO     | zombie collector waiting for pid 44567
[2026-05-01 00:02:36] 2026-04-30 22:01:51,890 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 00:02:36] 2026-04-30 22:01:51,890 | INFO     | collected zombie processes
[2026-05-01 00:02:36] 2026-04-30 22:01:51,890 | INFO     | will attempt to kill all subprocesses of pid=44567
[2026-05-01 00:02:36] 2026-04-30 22:01:52,180 | INFO     | process IDs to be killed: [44567] (in reverse order)
[2026-05-01 00:02:36] 2026-04-30 22:01:52,302 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 00:02:36] 2026-04-30 22:01:52,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 00:02:36] 2026-04-30 22:01:52,313 | INFO     | did not find any defunct processes belonging to 44567
[2026-05-01 00:02:36] 2026-04-30 22:01:52,324 | INFO     | did not find any defunct processes belonging to 44567
[2026-05-01 00:02:36] 2026-04-30 22:01:52,325 | INFO     | Ready for new job
[2026-05-01 00:02:36] 2026-04-30 22:01:52,327 | INFO     | ***************************************
[2026-05-01 00:02:36] 2026-04-30 22:01:52,327 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 00:02:36] 2026-04-30 22:01:52,327 | INFO     | ***************************************
[2026-05-01 00:02:36] 2026-04-30 22:01:52,327 | INFO     | 
[2026-05-01 00:02:36] 2026-04-30 22:01:52,331 | INFO     | architecture information:
[2026-05-01 00:02:36] 2026-04-30 22:01:52,331 | INFO     | executing command: cat /etc/os-release
[2026-05-01 00:02:36] 2026-04-30 22:01:52,347 | INFO     | cat /etc/os-release:
[2026-05-01 00:02:36] NAME="CentOS Linux"
[2026-05-01 00:02:36] VERSION="7 (Core)"
[2026-05-01 00:02:36] ID="centos"
[2026-05-01 00:02:36] ID_LIKE="rhel fedora"
[2026-05-01 00:02:36] VERSION_ID="7"
[2026-05-01 00:02:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 00:02:36] ANSI_COLOR="0;31"
[2026-05-01 00:02:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 00:02:36] HOME_URL="https://www.centos.org/"
[2026-05-01 00:02:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 00:02:36] 
[2026-05-01 00:02:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 00:02:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 00:02:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 00:02:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 00:02:36] 
[2026-05-01 00:02:36] 2026-04-30 22:01:52,347 | INFO     | ***************************************
[2026-05-01 00:02:36] 2026-04-30 22:01:52,848 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/5
[2026-05-01 00:02:36] 2026-04-30 22:01:52,862 | INFO     | sufficient remaining disk space (28303163392 B)
[2026-05-01 00:02:36] 2026-04-30 22:01:52,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 00:02:36] 2026-04-30 22:01:52,863 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 00:02:36] 2026-04-30 22:01:52,863 | INFO     | update_server=False
[2026-05-01 00:02:36] 2026-04-30 22:01:52,863 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 00:02:36] 2026-04-30 22:01:52,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 00:02:36] 2026-04-30 22:01:52,866 | INFO     | all data control threads have been joined
[2026-05-01 00:02:36] 2026-04-30 22:01:53,184 | INFO     | all payload control threads have been joined
[2026-05-01 00:02:36] 2026-04-30 22:01:53,283 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-01 00:02:36] 2026-04-30 22:01:53,283 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-01 00:02:36] 2026-04-30 22:01:53,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 00:02:36] 2026-04-30 22:01:53,283 | INFO     | will abort loop
[2026-05-01 00:02:36] 2026-04-30 22:01:53,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 00:02:36] 2026-04-30 22:01:53,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 00:02:36] 2026-04-30 22:01:53,868 | INFO     | [job] retrieve thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:53,869 | INFO     | [job] queue monitor thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:53,871 | INFO     | [data] control thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:54,189 | INFO     | [payload] control thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:54,223 | INFO     | [payload] validate_post thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:54,261 | INFO     | all job control threads have been joined
[2026-05-01 00:02:36] 2026-04-30 22:01:54,283 | INFO     | [payload] failed_post thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:54,288 | INFO     | [job] job monitor thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:54,799 | INFO     | [job] validate thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:54,844 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:55,116 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:55,172 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:55,193 | INFO     | [data] copytool_in thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:55,266 | INFO     | [job] control thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:55,682 | INFO     | [data] copytool_out thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:01:57,835 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:02:03,258 | INFO     | job.realtimelogging is not enabled
[2026-05-01 00:02:36] 2026-04-30 22:02:04,263 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 00:02:36] 2026-04-30 22:02:22,507 | INFO     | PID=39558 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-01 00:02:36] 2026-04-30 22:02:22,507 | INFO     | .. there are 15 such processes running
[2026-05-01 00:02:36] 2026-04-30 22:02:22,507 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 00:02:36] 2026-04-30 22:02:22,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 00:02:36] 2026-04-30 22:02:22,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 00:02:36] 2026-04-30 22:02:30,127 | INFO     | [monitor] cgroup control has ended
[2026-05-01 00:02:36] 2026-04-30 22:02:30,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22683521382208)>', '<ExcThread(monitor, started 22683271284480)>']
[2026-05-01 00:02:36] 2026-04-30 22:02:31,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 00:02:36] 2026-04-30 22:02:31,552 | INFO     | [monitor] control thread has ended
[2026-05-01 00:02:36] 2026-04-30 22:02:35,870 | INFO     | all workflow threads have been joined
[2026-05-01 00:02:36] 2026-04-30 22:02:35,870 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 00:02:36] 2026-04-30 22:02:35,870 | INFO     | traces error code: 0
[2026-05-01 00:02:36] 2026-04-30 22:02:35,871 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 00:02:36] 2026-04-30 22:02:35,997 [wrapper] ==== pilot stdout END ====
[2026-05-01 00:02:36] 2026-04-30 22:02:36,000 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 00:02:36] 2026-04-30 22:02:36,002 [wrapper] pilotpid: 39558
[2026-05-01 00:02:36] 2026-04-30 22:02:36,005 [wrapper] Pilot exit status: 0
[2026-05-01 00:02:36] 2026-04-30 22:02:36,014 [wrapper] pandaids: 7118490918
[2026-05-01 00:02:36] 2026-04-30 22:02:36,087 [wrapper] cleanup supervisor_pilot  360514 39559
[2026-05-01 00:02:36] 2026-04-30 22:02:36,090 [wrapper] Test setup, not cleaning
[2026-05-01 00:02:36] 2026-04-30 22:02:36,092 [wrapper] apfmon messages muted
[2026-05-01 00:02:36] 2026-04-30 22:02:36,095 [wrapper] ==== wrapper stdout END ====
[2026-05-01 00:02:36] 2026-04-30 22:02:36,097 [wrapper] ==== wrapper stderr END ====
[2026-05-01 00:02:36]  *** Error codes and diagnostics ***
[2026-05-01 00:02:36]     "exeErrorCode": 0,
[2026-05-01 00:02:36]     "pilotErrorCode": 0,
[2026-05-01 00:02:36]  *** Listing of results directory ***
[2026-05-01 00:02:36] total 472440
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc    683926 Apr 29 11:56 pilot3.tar.gz
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc      5631 Apr 29 12:23 queuedata.json
[2026-05-01 00:02:36] -rwx------. 1 boinc boinc     36322 Apr 29 12:23 runpilot2-wrapper.sh
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc       100 Apr 30 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 00:02:36] -rwxr-xr-x. 1 boinc boinc      7986 Apr 30 19:16 run_atlas
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc       105 Apr 30 19:16 job.xml
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc      6482 Apr 30 19:16 init_data.xml
[2026-05-01 00:02:36] -rw-r--r--. 2 boinc boinc 262163621 Apr 30 19:16 EVNT.49863838._000158.pool.root.1
[2026-05-01 00:02:36] -rw-r--r--. 2 boinc boinc     15667 Apr 30 19:16 start_atlas.sh
[2026-05-01 00:02:36] drwxrwx--x. 2 boinc boinc      4096 Apr 30 19:16 shared
[2026-05-01 00:02:36] -rw-r--r--. 2 boinc boinc    697423 Apr 30 19:16 input.tar.gz
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc         0 Apr 30 19:16 boinc_lockfile
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc      2591 Apr 30 19:16 pandaJob.out
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc    996122 Apr 30 19:17 agis_schedconf.cvmfs.json
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc       452 Apr 30 19:18 workernode_map.json
[2026-05-01 00:02:36] drwx------. 5 boinc boinc      4096 Apr 30 19:18 pilot3
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc 213630439 May  1 00:01 HITS.49863840._002941.pool.root.1
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc       488 May  1 00:01 boinc_task_state.xml
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc        95 May  1 00:01 pilot_heartbeat.json
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc      1036 May  1 00:01 memory_monitor_summary.json
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc   1510091 May  1 00:01 agis_ddmendpoints.agis.ALL.json
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc    356684 May  1 00:01 log.49863840._002941.job.log.tgz.1
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc      6439 May  1 00:01 heartbeat_new.json
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc      6330 May  1 00:01 heartbeat.json
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc      8192 May  1 00:02 boinc_mmap_file
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc        28 May  1 00:02 wrapper_checkpoint.txt
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc      5088 May  1 00:02 pilotlog.txt
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc   1566268 May  1 00:02 log.49863840._002941.job.log.1
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc       357 May  1 00:02 output.list
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc       410 May  1 00:02 runtime_log
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc   1945600 May  1 00:02 result.tar.gz
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc      8828 May  1 00:02 runtime_log.err
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc       666 May  1 00:02 dc2caedc87a0.diag
[2026-05-01 00:02:36] -rw-r--r--. 1 boinc boinc     20791 May  1 00:02 stderr.txt
[2026-05-01 00:02:36] HITS file was successfully produced:
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc 213630439 May  1 00:01 shared/HITS.pool.root.1
[2026-05-01 00:02:36]  *** Contents of shared directory: ***
[2026-05-01 00:02:36] total 467252
[2026-05-01 00:02:36] -rw-r--r--. 2 boinc boinc 262163621 Apr 30 19:16 ATLAS.root_0
[2026-05-01 00:02:36] -rw-r--r--. 2 boinc boinc     15667 Apr 30 19:16 start_atlas.sh
[2026-05-01 00:02:36] -rw-r--r--. 2 boinc boinc    697423 Apr 30 19:16 input.tar.gz
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc 213630439 May  1 00:01 HITS.pool.root.1
[2026-05-01 00:02:36] -rw-------. 1 boinc boinc   1945600 May  1 00:02 result.tar.gz
00:02:37 (35304): run_atlas exited; CPU time 63841.447718
00:02:37 (35304): called boinc_finish(0)

</stderr_txt>
]]>

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