Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:54:18 (52086): wrapper (7.7.26015): starting
05:54:18 (52086): wrapper: running run_atlas (--nthreads 3)
[2026-04-30 05:54:18] Arguments: --nthreads 3
[2026-04-30 05:54:18] Threads: 3
[2026-04-30 05:54:18] Checking for CVMFS
[2026-04-30 05:54:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 05:54:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 05:54:19] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 05:54:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 05:54:19] 2.9.2.0 8945 344 56700 159030 1 50 27325593 36864001 0 130560 0 166345 99.983 13165 14095 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-30 05:54:19] CVMFS is ok
[2026-04-30 05:54:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 05:54:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 05:54:19] Further information can be found at the LHC@home message board.
[2026-04-30 05:54:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 05:54:19] Checking for apptainer binary...
[2026-04-30 05:54:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 05:54:19] Running /usr/bin/apptainer --version
[2026-04-30 05:54:19] apptainer version 1.4.1-1.1
[2026-04-30 05:54:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 05:54:19] atlasA215
[2026-04-30 05:54:19] apptainer works
[2026-04-30 05:54:19] Set ATHENA_PROC_NUMBER=3
[2026-04-30 05:54:19] Set ATHENA_CORE_NUMBER=3
[2026-04-30 05:54:19] Starting ATLAS job with PandaID=7118491314
[2026-04-30 05:54:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 07:59:43]  *** The last 200 lines of the pilot log: ***
[2026-04-30 07:59:43] 2026-04-30 05:59:09,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 07:59:43] 2026-04-30 05:59:09,522 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 07:59:43] 2026-04-30 05:59:09,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 07:59:43] 2026-04-30 05:59:09,522 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 07:59:43] 2026-04-30 05:59:09,522 | INFO     | job 7118491314 has completed (purged errors)
[2026-04-30 07:59:43] 2026-04-30 05:59:09,522 | INFO     | overall cleanup function is called
[2026-04-30 07:59:43] 2026-04-30 05:59:10,529 | INFO     | --- collectZombieJob: --- 10, [60544]
[2026-04-30 07:59:43] 2026-04-30 05:59:10,529 | INFO     | zombie collector waiting for pid 60544
[2026-04-30 07:59:43] 2026-04-30 05:59:10,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 07:59:43] 2026-04-30 05:59:10,529 | INFO     | collected zombie processes
[2026-04-30 07:59:43] 2026-04-30 05:59:10,529 | INFO     | will attempt to kill all subprocesses of pid=60544
[2026-04-30 07:59:43] 2026-04-30 05:59:10,558 | INFO     | process IDs to be killed: [60544] (in reverse order)
[2026-04-30 07:59:43] 2026-04-30 05:59:10,582 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 07:59:43] 2026-04-30 05:59:10,582 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 07:59:43] 2026-04-30 05:59:10,583 | INFO     | did not find any defunct processes belonging to 60544
[2026-04-30 07:59:43] 2026-04-30 05:59:10,584 | INFO     | did not find any defunct processes belonging to 60544
[2026-04-30 07:59:43] 2026-04-30 05:59:10,585 | INFO     | Ready for new job
[2026-04-30 07:59:43] 2026-04-30 05:59:10,585 | INFO     | ***************************************
[2026-04-30 07:59:43] 2026-04-30 05:59:10,585 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 07:59:43] 2026-04-30 05:59:10,585 | INFO     | ***************************************
[2026-04-30 07:59:43] 2026-04-30 05:59:10,585 | INFO     | 
[2026-04-30 07:59:43] 2026-04-30 05:59:10,586 | INFO     | architecture information:
[2026-04-30 07:59:43] 2026-04-30 05:59:10,586 | INFO     | executing command: cat /etc/os-release
[2026-04-30 07:59:43] 2026-04-30 05:59:10,595 | INFO     | cat /etc/os-release:
[2026-04-30 07:59:43] NAME="CentOS Linux"
[2026-04-30 07:59:43] VERSION="7 (Core)"
[2026-04-30 07:59:43] ID="centos"
[2026-04-30 07:59:43] ID_LIKE="rhel fedora"
[2026-04-30 07:59:43] VERSION_ID="7"
[2026-04-30 07:59:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 07:59:43] ANSI_COLOR="0;31"
[2026-04-30 07:59:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 07:59:43] HOME_URL="https://www.centos.org/"
[2026-04-30 07:59:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 07:59:43] 
[2026-04-30 07:59:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 07:59:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 07:59:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 07:59:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 07:59:43] 
[2026-04-30 07:59:43] 2026-04-30 05:59:10,595 | INFO     | ***************************************
[2026-04-30 07:59:43] 2026-04-30 05:59:11,098 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-30 07:59:43] 2026-04-30 05:59:11,109 | INFO     | sufficient remaining disk space (379041349632 B)
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | INFO     | update_server=False
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 07:59:43] 2026-04-30 05:59:11,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 07:59:43] 2026-04-30 05:59:11,402 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-30 07:59:43] 2026-04-30 05:59:11,402 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-30 07:59:43] 2026-04-30 05:59:11,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 07:59:43] 2026-04-30 05:59:11,402 | INFO     | will abort loop
[2026-04-30 07:59:43] 2026-04-30 05:59:11,643 | INFO     | all data control threads have been joined
[2026-04-30 07:59:43] 2026-04-30 05:59:11,952 | INFO     | all job control threads have been joined
[2026-04-30 07:59:43] 2026-04-30 05:59:12,115 | INFO     | [job] retrieve thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,115 | INFO     | [job] queue monitor thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,142 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,149 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 07:59:43] 2026-04-30 05:59:12,380 | INFO     | [data] copytool_in thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,408 | INFO     | [job] job monitor thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,617 | INFO     | all payload control threads have been joined
[2026-04-30 07:59:43] 2026-04-30 05:59:12,648 | INFO     | [data] control thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,823 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:12,955 | INFO     | [job] control thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:13,116 | INFO     | [data] copytool_out thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:13,352 | INFO     | [payload] validate_post thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:13,377 | INFO     | [payload] failed_post thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:13,478 | INFO     | [job] validate thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:13,623 | INFO     | [payload] control thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:16,379 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:21,297 | INFO     | job.realtimelogging is not enabled
[2026-04-30 07:59:43] 2026-04-30 05:59:22,302 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 07:59:43] 2026-04-30 05:59:37,236 | INFO     | [monitor] cgroup control has ended
[2026-04-30 07:59:43] 2026-04-30 05:59:38,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082333910848)>', '<ExcThread(monitor, started 140081616639744)>']
[2026-04-30 07:59:43] 2026-04-30 05:59:38,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 07:59:43] 2026-04-30 05:59:38,249 | INFO     | [monitor] control thread has ended
[2026-04-30 07:59:43] 2026-04-30 05:59:43,187 | INFO     | all workflow threads have been joined
[2026-04-30 07:59:43] 2026-04-30 05:59:43,187 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 07:59:43] 2026-04-30 05:59:43,187 | INFO     | traces error code: 0
[2026-04-30 07:59:43] 2026-04-30 05:59:43,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 07:59:43] 2026-04-30 05:59:43,235 [wrapper] ==== pilot stdout END ====
[2026-04-30 07:59:43] 2026-04-30 05:59:43,237 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 07:59:43] 2026-04-30 05:59:43,239 [wrapper] pilotpid: 56122
[2026-04-30 07:59:43] 2026-04-30 05:59:43,241 [wrapper] Pilot exit status: 0
[2026-04-30 07:59:43] 2026-04-30 05:59:43,249 [wrapper] pandaids: 7118491314
[2026-04-30 07:59:43] 2026-04-30 05:59:43,264 [wrapper] cleanup supervisor_pilot   66580 56123
[2026-04-30 07:59:43] 2026-04-30 05:59:43,266 [wrapper] Test setup, not cleaning
[2026-04-30 07:59:43] 2026-04-30 05:59:43,269 [wrapper] apfmon messages muted
[2026-04-30 07:59:43] 2026-04-30 05:59:43,271 [wrapper] ==== wrapper stdout END ====
[2026-04-30 07:59:43] 2026-04-30 05:59:43,273 [wrapper] ==== wrapper stderr END ====
[2026-04-30 07:59:43]  *** Error codes and diagnostics ***
[2026-04-30 07:59:43]     "exeErrorCode": 0,
[2026-04-30 07:59:43]     "pilotErrorCode": 0,
[2026-04-30 07:59:43]  *** Listing of results directory ***
[2026-04-30 07:59:43] total 471732
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc    683926 Apr 29 11:56 pilot3.tar.gz
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc      5631 Apr 29 12:20 queuedata.json
[2026-04-30 07:59:43] -rwx------ 1 boinc boinc     36322 Apr 29 12:21 runpilot2-wrapper.sh
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc       100 Apr 30 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 07:59:43] -rwxr-xr-x 1 boinc boinc      7986 Apr 30 05:54 run_atlas
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc       105 Apr 30 05:54 job.xml
[2026-04-30 07:59:43] -rw-r--r-- 2 boinc boinc 259280023 Apr 30 05:54 EVNT.49863848._000165.pool.root.1
[2026-04-30 07:59:43] -rw-r--r-- 2 boinc boinc    697439 Apr 30 05:54 input.tar.gz
[2026-04-30 07:59:43] -rw-r--r-- 2 boinc boinc     15667 Apr 30 05:54 start_atlas.sh
[2026-04-30 07:59:43] drwxrwx--x 2 boinc boinc      4096 Apr 30 05:54 shared
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc         0 Apr 30 05:54 boinc_setup_complete
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc      6364 Apr 30 05:54 init_data.xml
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc         0 Apr 30 05:54 boinc_lockfile
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc      2650 Apr 30 05:54 pandaJob.out
[2026-04-30 07:59:43] -rw------- 1 boinc boinc   1001878 Apr 30 05:54 agis_schedconf.cvmfs.json
[2026-04-30 07:59:43] -rw------- 1 boinc boinc   1512704 Apr 30 05:54 agis_ddmendpoints.agis.ALL.json
[2026-04-30 07:59:43] -rw------- 1 boinc boinc       426 Apr 30 05:54 workernode_map.json
[2026-04-30 07:59:43] drwx------ 5 boinc boinc      4096 Apr 30 05:54 pilot3
[2026-04-30 07:59:43] -rw------- 1 boinc boinc 217730599 Apr 30 07:58 HITS.49863851._004121.pool.root.1
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc       487 Apr 30 07:58 boinc_task_state.xml
[2026-04-30 07:59:43] -rw------- 1 boinc boinc      1012 Apr 30 07:59 memory_monitor_summary.json
[2026-04-30 07:59:43] -rw------- 1 boinc boinc        95 Apr 30 07:59 pilot_heartbeat.json
[2026-04-30 07:59:43] -rw------- 1 boinc boinc    247729 Apr 30 07:59 log.49863851._004121.job.log.tgz.1
[2026-04-30 07:59:43] -rw------- 1 boinc boinc      6310 Apr 30 07:59 heartbeat_new.json
[2026-04-30 07:59:43] -rw------- 1 boinc boinc      6201 Apr 30 07:59 heartbeat.json
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc      8192 Apr 30 07:59 boinc_mmap_file
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc        27 Apr 30 07:59 wrapper_checkpoint.txt
[2026-04-30 07:59:43] -rw------- 1 boinc boinc      4813 Apr 30 07:59 pilotlog.txt
[2026-04-30 07:59:43] -rw------- 1 boinc boinc    711937 Apr 30 07:59 log.49863851._004121.job.log.1
[2026-04-30 07:59:43] -rw------- 1 boinc boinc       357 Apr 30 07:59 output.list
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc       410 Apr 30 07:59 runtime_log
[2026-04-30 07:59:43] -rw------- 1 boinc boinc    972800 Apr 30 07:59 result.tar.gz
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc      8534 Apr 30 07:59 runtime_log.err
[2026-04-30 07:59:43] -rw------- 1 boinc boinc       661 Apr 30 07:59 dbb50339fdd0.diag
[2026-04-30 07:59:43] -rw-r--r-- 1 boinc boinc     11220 Apr 30 07:59 stderr.txt
[2026-04-30 07:59:43] HITS file was successfully produced:
[2026-04-30 07:59:43] -rw------- 1 boinc boinc 217730599 Apr 30 07:58 shared/HITS.pool.root.1
[2026-04-30 07:59:43]  *** Contents of shared directory: ***
[2026-04-30 07:59:43] total 467492
[2026-04-30 07:59:43] -rw-r--r-- 2 boinc boinc 259280023 Apr 30 05:54 ATLAS.root_0
[2026-04-30 07:59:43] -rw-r--r-- 2 boinc boinc    697439 Apr 30 05:54 input.tar.gz
[2026-04-30 07:59:43] -rw-r--r-- 2 boinc boinc     15667 Apr 30 05:54 start_atlas.sh
[2026-04-30 07:59:43] -rw------- 1 boinc boinc 217730599 Apr 30 07:58 HITS.pool.root.1
[2026-04-30 07:59:43] -rw------- 1 boinc boinc    972800 Apr 30 07:59 result.tar.gz
07:59:45 (52086): run_atlas exited; CPU time 21037.725918
07:59:45 (52086): called boinc_finish(0)

</stderr_txt>
]]>

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