Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:51:29 (3287877): wrapper (7.7.26015): starting
16:51:29 (3287877): wrapper: running run_atlas (--nthreads 4)
[2026-04-30 16:51:29] Arguments: --nthreads 4
[2026-04-30 16:51:29] Threads: 4
[2026-04-30 16:51:29] Checking for CVMFS
[2026-04-30 16:51:29] No cvmfs_config command found, will try listing directly
[2026-04-30 16:51:29] CVMFS is ok
[2026-04-30 16:51:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 16:51:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 16:51:29] Further information can be found at the LHC@home message board.
[2026-04-30 16:51:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 16:51:29] Checking for apptainer binary...
[2026-04-30 16:51:29] which: no apptainer in ((null))
[2026-04-30 16:51:29] apptainer is not installed, using version from CVMFS
[2026-04-30 16:51:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 16:51:30] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-04-30 16:51:30] apptainer works
[2026-04-30 16:51:30] Set ATHENA_PROC_NUMBER=4
[2026-04-30 16:51:30] Set ATHENA_CORE_NUMBER=4
[2026-04-30 16:51:30] Starting ATLAS job with PandaID=7118439922
[2026-04-30 16:51:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 20:53:21]  *** The last 200 lines of the pilot log: ***
[2026-04-30 20:53:21] 2026-04-30 18:52:19,670 | INFO     | job 7118439922 has state=finished
[2026-04-30 20:53:21] 2026-04-30 18:52:19,670 | INFO     | preparing for final server update for job 7118439922 in state='finished'
[2026-04-30 20:53:21] 2026-04-30 18:52:19,670 | INFO     | reading metadata from: /var/lib/boinc/var/slot100/slots/0/PanDA_Pilot-7118439922/jobReport.json
[2026-04-30 20:53:21] 2026-04-30 18:52:19,673 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot100/slots/0/workernode_map.json
[2026-04-30 20:53:21] 2026-04-30 18:52:19,673 | INFO     | this job has now completed (state=finished)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,673 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,673 | INFO     | log transfer has been attempted: DONE
[2026-04-30 20:53:21] 2026-04-30 18:52:19,674 | INFO     | job 7118439922 has finished - writing final server update
[2026-04-30 20:53:21] 2026-04-30 18:52:19,674 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_178534/.job.ad'
[2026-04-30 20:53:21] 2026-04-30 18:52:19,674 | INFO     | total number of processed events: 400 (read)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,698 | INFO     | using path: /var/lib/boinc/var/slot100/slots/0/PanDA_Pilot-7118439922/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,699 | INFO     | extracted standard info from prmon json
[2026-04-30 20:53:21] 2026-04-30 18:52:19,699 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 20:53:21] 2026-04-30 18:52:19,699 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 20:53:21] 2026-04-30 18:52:19,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 20:53:21] 2026-04-30 18:52:19,704 | INFO     | fitting pss+swap vs Time
[2026-04-30 20:53:21] 2026-04-30 18:52:19,704 | INFO     | sum of square deviations: 4075741535.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,706 | INFO     | sum of deviations: 36414642472.00001
[2026-04-30 20:53:21] 2026-04-30 18:52:19,706 | INFO     | mean x (centered): 0.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,706 | INFO     | mean y: 2325929.0084745763
[2026-04-30 20:53:21] 2026-04-30 18:52:19,707 | INFO     | intersect: 2325929.0084745763
[2026-04-30 20:53:21] 2026-04-30 18:52:19,707 | INFO     | chi2: 1.3918630628131248
[2026-04-30 20:53:21] 2026-04-30 18:52:19,707 | INFO     | sum of square deviations: 3822136780.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,709 | INFO     | sum of deviations: 35243203962.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,709 | INFO     | mean x (centered): 0.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,709 | INFO     | mean y: 2325224.696969697
[2026-04-30 20:53:21] 2026-04-30 18:52:19,709 | INFO     | intersect: 2325224.696969697
[2026-04-30 20:53:21] 2026-04-30 18:52:19,710 | INFO     | chi2: 1.3924683210016904
[2026-04-30 20:53:21] 2026-04-30 18:52:19,710 | INFO     | current chi2=1.3924683210016904 (change=-0.043485469564965996 %)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,710 | INFO     | right removable region: 230
[2026-04-30 20:53:21] 2026-04-30 18:52:19,710 | INFO     | sum of square deviations: 3822136780.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,712 | INFO     | sum of deviations: 4061956633.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,712 | INFO     | mean x (centered): 0.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,712 | INFO     | mean y: 2345187.3636363638
[2026-04-30 20:53:21] 2026-04-30 18:52:19,712 | INFO     | intersect: 2345187.3636363638
[2026-04-30 20:53:21] 2026-04-30 18:52:19,712 | INFO     | chi2: 0.003267634114275988
[2026-04-30 20:53:21] 2026-04-30 18:52:19,712 | INFO     | current chi2=0.003267634114275988 (change=99.76523307489232 %)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,713 | INFO     | sum of square deviations: 3579276412.5
[2026-04-30 20:53:21] 2026-04-30 18:52:19,714 | INFO     | sum of deviations: 3261116699.5000005
[2026-04-30 20:53:21] 2026-04-30 18:52:19,714 | INFO     | mean x (centered): 0.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,715 | INFO     | mean y: 2345688.3141592923
[2026-04-30 20:53:21] 2026-04-30 18:52:19,715 | INFO     | intersect: 2345688.3141592923
[2026-04-30 20:53:21] 2026-04-30 18:52:19,715 | INFO     | chi2: 0.0029763945202768913
[2026-04-30 20:53:21] 2026-04-30 18:52:19,715 | INFO     | current chi2=0.0029763945202768913 (change=8.91285816630137 %)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,715 | INFO     | left removable region: 10
[2026-04-30 20:53:21] 2026-04-30 18:52:19,716 | INFO     | sum of square deviations: 3301699115.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,717 | INFO     | sum of deviations: 2743734036.4999995
[2026-04-30 20:53:21] 2026-04-30 18:52:19,717 | INFO     | mean x (centered): 0.0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,717 | INFO     | mean y: 2345347.540909091
[2026-04-30 20:53:21] 2026-04-30 18:52:19,717 | INFO     | intersect: 2345347.540909091
[2026-04-30 20:53:21] 2026-04-30 18:52:19,718 | INFO     | chi2: 0.0029252638649372967
[2026-04-30 20:53:21] 2026-04-30 18:52:19,718 | INFO     | current memory leak: 0.83 B/s (using 220 data points, chi2=0.00)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,718 | INFO     | could have reported an average CPU frequency of 2690 MHz (11 samples)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | ..............................
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . Timing measurements:
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . get job = 0 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . initial setup = 8 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . payload setup = 15 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . stage-in = 0 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . payload execution = 14393 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . stage-out = 1 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | . log creation = 0 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,719 | INFO     | ..............................
[2026-04-30 20:53:21] 2026-04-30 18:52:19,813 | INFO     | 
[2026-04-30 20:53:21] 2026-04-30 18:52:19,813 | INFO     | job summary report
[2026-04-30 20:53:21] 2026-04-30 18:52:19,813 | INFO     | --------------------------------------------------
[2026-04-30 20:53:21] 2026-04-30 18:52:19,813 | INFO     | PanDA job id: 7118439922
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | task id: 49863851
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | errors: (none)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | pilot state: finished 
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | transexitcode: 0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | exeerrorcode: 0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | exeerrordiag: 
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | exitcode: 0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | exitmsg: OK
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | cpuconsumptiontime: 55427 s
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | nevents: 400
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | neventsw: 0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,814 | INFO     | pid: 3303629
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | pgrp: 3303629
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | corecount: 4
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | event service: False
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | sizes: {0: 2276621, 1: 2278450, 11: 2278450, 14412: 2309676, 14413: 2309675, 14414: 2318937, 14416: 2319075}
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | --------------------------------------------------
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | 
[2026-04-30 20:53:21] 2026-04-30 18:52:19,815 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot100/slots/0
[2026-04-30 20:53:21] 2026-04-30 18:52:19,846 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,849 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 20:53:21] 2026-04-30 18:52:19,849 | INFO     | job 7118439922 has completed (purged errors)
[2026-04-30 20:53:21] 2026-04-30 18:52:19,849 | INFO     | overall cleanup function is called
[2026-04-30 20:53:21] 2026-04-30 18:52:20,859 | INFO     | --- collectZombieJob: --- 10, [3303629]
[2026-04-30 20:53:21] 2026-04-30 18:52:20,859 | INFO     | zombie collector waiting for pid 3303629
[2026-04-30 20:53:21] 2026-04-30 18:52:20,859 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 20:53:21] 2026-04-30 18:52:20,859 | INFO     | collected zombie processes
[2026-04-30 20:53:21] 2026-04-30 18:52:20,859 | INFO     | will attempt to kill all subprocesses of pid=3303629
[2026-04-30 20:53:21] 2026-04-30 18:52:21,432 | INFO     | process IDs to be killed: [3303629] (in reverse order)
[2026-04-30 20:53:21] 2026-04-30 18:52:21,727 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 20:53:21] 2026-04-30 18:52:21,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 20:53:21] 2026-04-30 18:52:21,754 | INFO     | did not find any defunct processes belonging to 3303629
[2026-04-30 20:53:21] 2026-04-30 18:52:21,776 | INFO     | did not find any defunct processes belonging to 3303629
[2026-04-30 20:53:21] 2026-04-30 18:52:21,776 | INFO     | Ready for new job
[2026-04-30 20:53:21] 2026-04-30 18:52:21,778 | INFO     | ***************************************
[2026-04-30 20:53:21] 2026-04-30 18:52:21,778 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 20:53:21] 2026-04-30 18:52:21,779 | INFO     | ***************************************
[2026-04-30 20:53:21] 2026-04-30 18:52:21,779 | INFO     | 
[2026-04-30 20:53:21] 2026-04-30 18:52:21,787 | INFO     | architecture information:
[2026-04-30 20:53:21] 2026-04-30 18:52:21,787 | INFO     | executing command: cat /etc/os-release
[2026-04-30 20:53:21] 2026-04-30 18:52:21,811 | INFO     | cat /etc/os-release:
[2026-04-30 20:53:21] NAME="CentOS Linux"
[2026-04-30 20:53:21] VERSION="7 (Core)"
[2026-04-30 20:53:21] ID="centos"
[2026-04-30 20:53:21] ID_LIKE="rhel fedora"
[2026-04-30 20:53:21] VERSION_ID="7"
[2026-04-30 20:53:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 20:53:21] ANSI_COLOR="0;31"
[2026-04-30 20:53:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 20:53:21] HOME_URL="https://www.centos.org/"
[2026-04-30 20:53:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 20:53:21] 
[2026-04-30 20:53:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 20:53:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 20:53:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 20:53:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 20:53:21] 
[2026-04-30 20:53:21] 2026-04-30 18:52:21,812 | INFO     | ***************************************
[2026-04-30 20:53:21] 2026-04-30 18:52:22,313 | INFO     | executing command: df -mP /var/lib/boinc/var/slot100/slots/0
[2026-04-30 20:53:21] 2026-04-30 18:52:22,340 | INFO     | sufficient remaining disk space (92466577408 B)
[2026-04-30 20:53:21] 2026-04-30 18:52:22,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 20:53:21] 2026-04-30 18:52:22,341 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 20:53:21] 2026-04-30 18:52:22,341 | INFO     | update_server=False
[2026-04-30 20:53:21] 2026-04-30 18:52:22,341 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 20:53:21] 2026-04-30 18:52:22,620 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-30 20:53:21] 2026-04-30 18:52:22,621 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-30 20:53:21] 2026-04-30 18:52:22,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 20:53:21] 2026-04-30 18:52:22,621 | INFO     | will abort loop
[2026-04-30 20:53:21] 2026-04-30 18:52:23,006 | INFO     | all payload control threads have been joined
[2026-04-30 20:53:21] 2026-04-30 18:52:23,026 | INFO     | all data control threads have been joined
[2026-04-30 20:53:21] 2026-04-30 18:52:23,201 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 20:53:21] 2026-04-30 18:52:23,346 | INFO     | [job] retrieve thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:23,404 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:23,575 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:23,626 | INFO     | [job] job monitor thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:23,704 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:23,709 | INFO     | all job control threads have been joined
[2026-04-30 20:53:21] 2026-04-30 18:52:23,904 | INFO     | [payload] validate_post thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,011 | INFO     | [payload] control thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,032 | INFO     | [data] control thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,082 | INFO     | [data] copytool_in thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 20:53:21] 2026-04-30 18:52:24,555 | INFO     | [payload] failed_post thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,595 | INFO     | [job] validate thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,714 | INFO     | [job] control thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:24,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 20:53:21] 2026-04-30 18:52:25,206 | INFO     | [data] copytool_out thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:25,829 | INFO     | [job] queue monitor thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:28,463 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:32,425 | INFO     | job.realtimelogging is not enabled
[2026-04-30 20:53:21] 2026-04-30 18:52:33,430 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 20:53:21] 2026-04-30 18:52:53,092 | INFO     | PID=3292060 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-30 20:53:21] 2026-04-30 18:52:53,092 | INFO     | .. there are 26 such processes running
[2026-04-30 20:53:21] 2026-04-30 18:52:53,092 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 20:53:21] 2026-04-30 18:52:53,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 20:53:21] 2026-04-30 18:52:53,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 20:53:21] 2026-04-30 18:53:16,309 | INFO     | [monitor] cgroup control has ended
[2026-04-30 20:53:21] 2026-04-30 18:53:16,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22834339927872)>', '<ExcThread(monitor, started 22834034210560)>']
[2026-04-30 20:53:21] 2026-04-30 18:53:17,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 20:53:21] 2026-04-30 18:53:17,209 | INFO     | [monitor] control thread has ended
[2026-04-30 20:53:21] 2026-04-30 18:53:21,406 | INFO     | all workflow threads have been joined
[2026-04-30 20:53:21] 2026-04-30 18:53:21,407 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 20:53:21] 2026-04-30 18:53:21,407 | INFO     | traces error code: 0
[2026-04-30 20:53:21] 2026-04-30 18:53:21,407 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 20:53:21] 2026-04-30 18:53:21,556 [wrapper] ==== pilot stdout END ====
[2026-04-30 20:53:21] 2026-04-30 18:53:21,560 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 20:53:21] 2026-04-30 18:53:21,564 [wrapper] pilotpid: 3292060
[2026-04-30 20:53:21] 2026-04-30 18:53:21,568 [wrapper] Pilot exit status: 0
[2026-04-30 20:53:21] 2026-04-30 18:53:21,584 [wrapper] pandaids: 7118439922
[2026-04-30 20:53:21] 2026-04-30 18:53:21,756 [wrapper] cleanup supervisor_pilot 3863332 3292061
[2026-04-30 20:53:21] 2026-04-30 18:53:21,760 [wrapper] Test setup, not cleaning
[2026-04-30 20:53:21] 2026-04-30 18:53:21,764 [wrapper] apfmon messages muted
[2026-04-30 20:53:21] 2026-04-30 18:53:21,767 [wrapper] ==== wrapper stdout END ====
[2026-04-30 20:53:21] 2026-04-30 18:53:21,771 [wrapper] ==== wrapper stderr END ====
[2026-04-30 20:53:21]  *** Error codes and diagnostics ***
[2026-04-30 20:53:21]     "exeErrorCode": 0,
[2026-04-30 20:53:21]     "pilotErrorCode": 0,
[2026-04-30 20:53:21]  *** Listing of results directory ***
[2026-04-30 20:53:21] total 473660
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc    683926 Apr 29 10:15 pilot3.tar.gz
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc      5631 Apr 29 10:21 queuedata.json
[2026-04-30 20:53:21] -rwx------. 1 boinc boinc     36322 Apr 29 10:21 runpilot2-wrapper.sh
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc       100 Apr 30 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 20:53:21] -rwxr-xr-x. 1 boinc boinc      7986 Apr 30 16:51 run_atlas
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc       105 Apr 30 16:51 job.xml
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc      6540 Apr 30 16:51 init_data.xml
[2026-04-30 20:53:21] -rw-r--r--. 2 boinc boinc 261265140 Apr 30 16:51 EVNT.49863848._000145.pool.root.1
[2026-04-30 20:53:21] -rw-r--r--. 2 boinc boinc     15667 Apr 30 16:51 start_atlas.sh
[2026-04-30 20:53:21] drwxrwx--x. 2 boinc boinc      4096 Apr 30 16:51 shared
[2026-04-30 20:53:21] -rw-r--r--. 2 boinc boinc    697433 Apr 30 16:51 input.tar.gz
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc         0 Apr 30 16:51 boinc_lockfile
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc      2650 Apr 30 16:51 pandaJob.out
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc    993382 Apr 30 16:51 agis_schedconf.cvmfs.json
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc       444 Apr 30 16:51 workernode_map.json
[2026-04-30 20:53:21] drwx------. 5 boinc boinc      4096 Apr 30 16:51 pilot3
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc 216304288 Apr 30 20:51 HITS.49863851._003616.pool.root.1
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc       488 Apr 30 20:51 boinc_task_state.xml
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc        95 Apr 30 20:52 pilot_heartbeat.json
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc      1029 Apr 30 20:52 memory_monitor_summary.json
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc   1510091 Apr 30 20:52 agis_ddmendpoints.agis.ALL.json
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc    329974 Apr 30 20:52 log.49863851._003616.job.log.tgz.1
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc      6383 Apr 30 20:52 heartbeat_new.json
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc      6274 Apr 30 20:52 heartbeat.json
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc      8192 Apr 30 20:53 boinc_mmap_file
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc        28 Apr 30 20:53 wrapper_checkpoint.txt
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc      5091 Apr 30 20:53 pilotlog.txt
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc   1335956 Apr 30 20:53 log.49863851._003616.job.log.1
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc       357 Apr 30 20:53 output.list
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc       410 Apr 30 20:53 runtime_log
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc   1679360 Apr 30 20:53 result.tar.gz
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc       666 Apr 30 20:53 bf830d61ce99.diag
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc      8845 Apr 30 20:53 runtime_log.err
[2026-04-30 20:53:21] -rw-r--r--. 1 boinc boinc     21049 Apr 30 20:53 stderr.txt
[2026-04-30 20:53:21] HITS file was successfully produced:
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc 216304288 Apr 30 20:51 shared/HITS.pool.root.1
[2026-04-30 20:53:21]  *** Contents of shared directory: ***
[2026-04-30 20:53:21] total 468728
[2026-04-30 20:53:21] -rw-r--r--. 2 boinc boinc 261265140 Apr 30 16:51 ATLAS.root_0
[2026-04-30 20:53:21] -rw-r--r--. 2 boinc boinc     15667 Apr 30 16:51 start_atlas.sh
[2026-04-30 20:53:21] -rw-r--r--. 2 boinc boinc    697433 Apr 30 16:51 input.tar.gz
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc 216304288 Apr 30 20:51 HITS.pool.root.1
[2026-04-30 20:53:21] -rw-------. 1 boinc boinc   1679360 Apr 30 20:53 result.tar.gz
20:53:23 (3287877): run_atlas exited; CPU time 56230.550722
20:53:23 (3287877): called boinc_finish(0)

</stderr_txt>
]]>

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