Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:54:25 (1416776): wrapper (7.7.26015): starting
12:54:25 (1416776): wrapper: running run_atlas (--nthreads 12)
[2026-04-30 12:54:25] Arguments: --nthreads 12
[2026-04-30 12:54:25] Threads: 12
[2026-04-30 12:54:25] Checking for CVMFS
[2026-04-30 12:54:25] No cvmfs_config command found, will try listing directly
[2026-04-30 12:54:25] CVMFS is ok
[2026-04-30 12:54:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 12:54:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 12:54:25] Further information can be found at the LHC@home message board.
[2026-04-30 12:54:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 12:54:25] Checking for apptainer binary...
[2026-04-30 12:54:25] which: no apptainer in ((null))
[2026-04-30 12:54:25] apptainer is not installed, using version from CVMFS
[2026-04-30 12:54:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 12:54:25] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-04-30 12:54:25] apptainer works
[2026-04-30 12:54:25] Set ATHENA_PROC_NUMBER=12
[2026-04-30 12:54:25] Set ATHENA_CORE_NUMBER=12
[2026-04-30 12:54:25] Starting ATLAS job with PandaID=7118281586
[2026-04-30 12:54:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 13:31:48]  *** The last 200 lines of the pilot log: ***
[2026-04-30 13:31:48]  scope=mc23_13p6TeV
[2026-04-30 13:31:48]  status=None
[2026-04-30 13:31:48]  status_code=0
[2026-04-30 13:31:48]  storage_token=
[2026-04-30 13:31:48]  surl=/var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/log.49863752._003603.job.log.tgz.1
[2026-04-30 13:31:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/e2/log.49863752._003603.job.log.tgz.1
[2026-04-30 13:31:48]  workdir=None
[2026-04-30 13:31:48] ]
[2026-04-30 13:31:48] 2026-04-30 11:31:14,379 | INFO     | transferring file log.49863752._003603.job.log.tgz.1 from /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/log.49863752._003603.job.log.tgz.1 to /var/lib/b
[2026-04-30 13:31:48] 2026-04-30 11:31:14,379 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/log.49863752._003603.job.log.tgz.1 /var/lib/boinc/var/slot96/slots/3/lo
[2026-04-30 13:31:48] 2026-04-30 11:31:14,395 | INFO     | adding to output.list: log.49863752._003603.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/e2/log.49863752._003603.job.log.tg
[2026-04-30 13:31:48] 2026-04-30 11:31:14,395 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-30 13:31:48] 2026-04-30 11:31:14,395 | INFO     | summary of transferred files:
[2026-04-30 13:31:48] 2026-04-30 11:31:14,396 | INFO     |  -- lfn=log.49863752._003603.job.log.tgz.1, status_code=0, status=transferred
[2026-04-30 13:31:48] 2026-04-30 11:31:14,396 | INFO     | stage-out finished correctly
[2026-04-30 13:31:48] 2026-04-30 11:31:15,080 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-30 13:31:48] 2026-04-30 11:31:15,261 | WARNING  | process 1437374 can no longer be monitored (due to stat problems) - aborting
[2026-04-30 13:31:48] 2026-04-30 11:31:15,261 | INFO     | using path: /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,262 | INFO     | using path: /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,262 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-30 13:31:48] 2026-04-30 11:31:15,262 | WARNING  | maxPSS not found in memory monitor output
[2026-04-30 13:31:48] 2026-04-30 11:31:15,262 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4316922 B
[2026-04-30 13:31:48] 2026-04-30 11:31:15,262 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15612 B
[2026-04-30 13:31:48] 2026-04-30 11:31:15,262 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/3
[2026-04-30 13:31:48] 2026-04-30 11:31:15,278 | INFO     | sufficient remaining disk space (49248468992 B)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,279 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,280 | INFO     | size of work directory /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586: 4599543 B (within 5033164800 B limit)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,280 | INFO     | pfn file=/var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/HITS.49863752._003603.pool.root.1 does not exist (skip from workdir size calculation)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,280 | INFO     | total size of present files: 0 B (workdir size: 4599543 B)
[2026-04-30 13:31:48] 2026-04-30 11:31:15,280 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/HITS.49863752._003603.pool.root.1 since it does not exist
[2026-04-30 13:31:48] 2026-04-30 11:31:15,546 | INFO     | number of running child processes to parent process 1437374: 1
[2026-04-30 13:31:48] 2026-04-30 11:31:15,546 | INFO     | maximum number of monitored processes: 6
[2026-04-30 13:31:48] 2026-04-30 11:31:16,687 | INFO     | job 7118281586 has state=finished
[2026-04-30 13:31:48] 2026-04-30 11:31:16,687 | INFO     | preparing for final server update for job 7118281586 in state='finished'
[2026-04-30 13:31:48] 2026-04-30 11:31:16,687 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/jobReport.json
[2026-04-30 13:31:48] 2026-04-30 11:31:16,689 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/3/workernode_map.json
[2026-04-30 13:31:48] 2026-04-30 11:31:16,689 | INFO     | this job has now completed (state=finished)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,690 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,690 | INFO     | log transfer has been attempted: DONE
[2026-04-30 13:31:48] 2026-04-30 11:31:16,690 | INFO     | job 7118281586 has finished - writing final server update
[2026-04-30 13:31:48] 2026-04-30 11:31:16,690 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3054960/.job.ad'
[2026-04-30 13:31:48] 2026-04-30 11:31:16,690 | INFO     | total number of processed events: 400 (read)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,707 | INFO     | using path: /var/lib/boinc/var/slot96/slots/3/PanDA_Pilot-7118281586/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,708 | INFO     | extracted standard info from prmon json
[2026-04-30 13:31:48] 2026-04-30 11:31:16,708 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 13:31:48] 2026-04-30 11:31:16,708 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 13:31:48] 2026-04-30 11:31:16,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | fitting pss+swap vs Time
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | sum of square deviations: 7553630.0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | sum of deviations: 133232418.0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | mean x (centered): 0.0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | mean y: 2714772.103448276
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | intersect: 2714772.103448276
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | chi2: 9.751689470821162e-05
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | current memory leak: 17.64 B/s (using 29 data points, chi2=0.00)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | could have reported an average CPU frequency of 3662 MHz (5 samples)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | ..............................
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | . Timing measurements:
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | . get job = 0 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | . initial setup = 3 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,709 | INFO     | . payload setup = 5 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,710 | INFO     | . stage-in = 0 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,710 | INFO     | . payload execution = 2177 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,710 | INFO     | . stage-out = 0 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,710 | INFO     | . log creation = 0 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,710 | INFO     | ..............................
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | 
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | job summary report
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | --------------------------------------------------
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | PanDA job id: 7118281586
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | task id: 49863752
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | errors: (none)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | pilot state: finished 
[2026-04-30 13:31:48] 2026-04-30 11:31:16,816 | INFO     | transexitcode: 0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | exeerrorcode: 0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | exeerrordiag: 
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | exitcode: 0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | exitmsg: OK
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | cpuconsumptiontime: 24042 s
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | nevents: 400
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | neventsw: 0
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | pid: 1437374
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | pgrp: 1437374
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | corecount: 12
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | event service: False
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | sizes: {0: 2277328, 1: 2278958, 11: 2278986, 2187: 2304082, 2188: 2313102, 2189: 2313158, 2190: 2313540}
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | --------------------------------------------------
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | 
[2026-04-30 13:31:48] 2026-04-30 11:31:16,817 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/3
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | job 7118281586 has completed (purged errors)
[2026-04-30 13:31:48] 2026-04-30 11:31:16,841 | INFO     | overall cleanup function is called
[2026-04-30 13:31:48] 2026-04-30 11:31:17,849 | INFO     | --- collectZombieJob: --- 10, [1437374]
[2026-04-30 13:31:48] 2026-04-30 11:31:17,849 | INFO     | zombie collector waiting for pid 1437374
[2026-04-30 13:31:48] 2026-04-30 11:31:17,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 13:31:48] 2026-04-30 11:31:17,849 | INFO     | collected zombie processes
[2026-04-30 13:31:48] 2026-04-30 11:31:17,849 | INFO     | will attempt to kill all subprocesses of pid=1437374
[2026-04-30 13:31:48] 2026-04-30 11:31:18,107 | INFO     | process IDs to be killed: [1437374] (in reverse order)
[2026-04-30 13:31:48] 2026-04-30 11:31:18,239 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 13:31:48] 2026-04-30 11:31:18,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 13:31:48] 2026-04-30 11:31:18,260 | INFO     | did not find any defunct processes belonging to 1437374
[2026-04-30 13:31:48] 2026-04-30 11:31:18,278 | INFO     | did not find any defunct processes belonging to 1437374
[2026-04-30 13:31:48] 2026-04-30 11:31:18,279 | INFO     | Ready for new job
[2026-04-30 13:31:48] 2026-04-30 11:31:18,280 | INFO     | ***************************************
[2026-04-30 13:31:48] 2026-04-30 11:31:18,280 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 13:31:48] 2026-04-30 11:31:18,280 | INFO     | ***************************************
[2026-04-30 13:31:48] 2026-04-30 11:31:18,280 | INFO     | 
[2026-04-30 13:31:48] 2026-04-30 11:31:18,285 | INFO     | architecture information:
[2026-04-30 13:31:48] 2026-04-30 11:31:18,285 | INFO     | executing command: cat /etc/os-release
[2026-04-30 13:31:48] 2026-04-30 11:31:18,296 | INFO     | cat /etc/os-release:
[2026-04-30 13:31:48] NAME="CentOS Linux"
[2026-04-30 13:31:48] VERSION="7 (Core)"
[2026-04-30 13:31:48] ID="centos"
[2026-04-30 13:31:48] ID_LIKE="rhel fedora"
[2026-04-30 13:31:48] VERSION_ID="7"
[2026-04-30 13:31:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 13:31:48] ANSI_COLOR="0;31"
[2026-04-30 13:31:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 13:31:48] HOME_URL="https://www.centos.org/"
[2026-04-30 13:31:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 13:31:48] 
[2026-04-30 13:31:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 13:31:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 13:31:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 13:31:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 13:31:48] 
[2026-04-30 13:31:48] 2026-04-30 11:31:18,297 | INFO     | ***************************************
[2026-04-30 13:31:48] 2026-04-30 11:31:18,800 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/3
[2026-04-30 13:31:48] 2026-04-30 11:31:18,812 | INFO     | sufficient remaining disk space (49253711872 B)
[2026-04-30 13:31:48] 2026-04-30 11:31:18,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 13:31:48] 2026-04-30 11:31:18,812 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 13:31:48] 2026-04-30 11:31:18,812 | INFO     | update_server=False
[2026-04-30 13:31:48] 2026-04-30 11:31:18,812 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 13:31:48] 2026-04-30 11:31:18,871 | INFO     | all payload control threads have been joined
[2026-04-30 13:31:48] 2026-04-30 11:31:19,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 13:31:48] 2026-04-30 11:31:19,054 | INFO     | aborting loop
[2026-04-30 13:31:48] 2026-04-30 11:31:19,216 | INFO     | all data control threads have been joined
[2026-04-30 13:31:48] 2026-04-30 11:31:19,554 | INFO     | all job control threads have been joined
[2026-04-30 13:31:48] 2026-04-30 11:31:19,817 | INFO     | [job] retrieve thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:19,877 | INFO     | [payload] control thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:19,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 13:31:48] 2026-04-30 11:31:20,032 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:20,059 | INFO     | [job] job monitor thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:20,221 | INFO     | [data] control thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:20,407 | INFO     | [payload] failed_post thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:20,560 | INFO     | [job] control thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:20,810 | INFO     | [payload] validate_post thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:20,892 | INFO     | [job] validate thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:21,002 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:21,094 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:21,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 13:31:48] 2026-04-30 11:31:21,162 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:21,224 | INFO     | [data] copytool_in thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:21,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 13:31:48] 2026-04-30 11:31:21,954 | INFO     | [data] copytool_out thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:22,770 | INFO     | [job] queue monitor thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:25,137 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 13:31:48] 2026-04-30 11:31:38,148 | INFO     | [monitor] cgroup control has ended
[2026-04-30 13:31:48] 2026-04-30 11:31:38,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23403072796480)>', '<ExcThread(monitor, started 23402835617536)>']
[2026-04-30 13:31:48] 2026-04-30 11:31:43,270 | INFO     | all workflow threads have been joined
[2026-04-30 13:31:48] 2026-04-30 11:31:43,270 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 13:31:48] 2026-04-30 11:31:43,270 | INFO     | traces error code: 0
[2026-04-30 13:31:48] 2026-04-30 11:31:43,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 13:31:48] 2026-04-30 11:31:48,473 | INFO     | PID=1424745 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-30 13:31:48] 2026-04-30 11:31:48,473 | INFO     | .. there are 15 such processes running
[2026-04-30 13:31:48] 2026-04-30 11:31:48,474 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 13:31:48] 2026-04-30 11:31:48,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 13:31:48] 2026-04-30 11:31:48,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 13:31:48] 2026-04-30 11:31:48,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 13:31:48] 2026-04-30 11:31:48,474 | INFO     | [monitor] control thread has ended
[2026-04-30 13:31:48] 2026-04-30 11:31:48,577 [wrapper] ==== pilot stdout END ====
[2026-04-30 13:31:48] 2026-04-30 11:31:48,579 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 13:31:48] 2026-04-30 11:31:48,580 [wrapper] pilotpid: 1424745
[2026-04-30 13:31:48] 2026-04-30 11:31:48,582 [wrapper] Pilot exit status: 0
[2026-04-30 13:31:48] 2026-04-30 11:31:48,586 [wrapper] pandaids: 7118281586
[2026-04-30 13:31:48] 2026-04-30 11:31:48,678 [wrapper] cleanup supervisor_pilot 1594619 1424747
[2026-04-30 13:31:48] 2026-04-30 11:31:48,680 [wrapper] Test setup, not cleaning
[2026-04-30 13:31:48] 2026-04-30 11:31:48,683 [wrapper] apfmon messages muted
[2026-04-30 13:31:48] 2026-04-30 11:31:48,685 [wrapper] ==== wrapper stdout END ====
[2026-04-30 13:31:48] 2026-04-30 11:31:48,686 [wrapper] ==== wrapper stderr END ====
[2026-04-30 13:31:48]  *** Error codes and diagnostics ***
[2026-04-30 13:31:48]     "exeErrorCode": 0,
[2026-04-30 13:31:48]     "pilotErrorCode": 0,
[2026-04-30 13:31:48]  *** Listing of results directory ***
[2026-04-30 13:31:48] total 462088
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc      5631 Apr 29 05:20 queuedata.json
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc    683926 Apr 29 05:22 pilot3.tar.gz
[2026-04-30 13:31:48] -rwx------. 1 boinc boinc     36322 Apr 29 05:23 runpilot2-wrapper.sh
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc       100 Apr 30 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 13:31:48] -rwxr-xr-x. 1 boinc boinc      7986 Apr 30 12:54 run_atlas
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc       105 Apr 30 12:54 job.xml
[2026-04-30 13:31:48] -rw-r--r--. 2 boinc boinc    697421 Apr 30 12:54 input.tar.gz
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc      6628 Apr 30 12:54 init_data.xml
[2026-04-30 13:31:48] -rw-r--r--. 2 boinc boinc 258867007 Apr 30 12:54 EVNT.49863749._000144.pool.root.1
[2026-04-30 13:31:48] -rw-r--r--. 2 boinc boinc     15667 Apr 30 12:54 start_atlas.sh
[2026-04-30 13:31:48] drwxrwx--x. 2 boinc boinc      4096 Apr 30 12:54 shared
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc         0 Apr 30 12:54 boinc_lockfile
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc      2587 Apr 30 12:54 pandaJob.out
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc    993449 Apr 30 12:54 agis_schedconf.cvmfs.json
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc   1510841 Apr 30 12:54 agis_ddmendpoints.agis.ALL.json
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc       444 Apr 30 12:54 workernode_map.json
[2026-04-30 13:31:48] drwx------. 5 boinc boinc      4096 Apr 30 12:54 pilot3
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc       487 Apr 30 13:30 boinc_task_state.xml
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc 208992830 Apr 30 13:30 HITS.49863752._003603.pool.root.1
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc      1029 Apr 30 13:31 memory_monitor_summary.json
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc    345391 Apr 30 13:31 log.49863752._003603.job.log.tgz.1
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc      6376 Apr 30 13:31 heartbeat_new.json
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc      6267 Apr 30 13:31 heartbeat.json
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc      8192 Apr 30 13:31 boinc_mmap_file
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc        27 Apr 30 13:31 wrapper_checkpoint.txt
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc       823 Apr 30 13:31 pilotlog.txt
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc        95 Apr 30 13:31 pilot_heartbeat.json
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc    253789 Apr 30 13:31 log.49863752._003603.job.log.1
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc       357 Apr 30 13:31 output.list
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc       410 Apr 30 13:31 runtime_log
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc    614400 Apr 30 13:31 result.tar.gz
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc      8829 Apr 30 13:31 runtime_log.err
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc       660 Apr 30 13:31 799b511eb9de.diag
[2026-04-30 13:31:48] -rw-r--r--. 1 boinc boinc     22141 Apr 30 13:31 stderr.txt
[2026-04-30 13:31:48] HITS file was successfully produced:
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc 208992830 Apr 30 13:30 shared/HITS.pool.root.1
[2026-04-30 13:31:48]  *** Contents of shared directory: ***
[2026-04-30 13:31:48] total 458204
[2026-04-30 13:31:48] -rw-r--r--. 2 boinc boinc    697421 Apr 30 12:54 input.tar.gz
[2026-04-30 13:31:48] -rw-r--r--. 2 boinc boinc 258867007 Apr 30 12:54 ATLAS.root_0
[2026-04-30 13:31:48] -rw-r--r--. 2 boinc boinc     15667 Apr 30 12:54 start_atlas.sh
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc 208992830 Apr 30 13:30 HITS.pool.root.1
[2026-04-30 13:31:48] -rw-------. 1 boinc boinc    614400 Apr 30 13:31 result.tar.gz
13:31:49 (1416776): run_atlas exited; CPU time 24095.397258
13:31:49 (1416776): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN