Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:29:13 (2432682): wrapper (7.7.26015): starting
16:29:13 (2432682): wrapper: running run_atlas (--nthreads 4)
[2026-04-30 16:29:13] Arguments: --nthreads 4
[2026-04-30 16:29:13] Threads: 4
[2026-04-30 16:29:13] Checking for CVMFS
[2026-04-30 16:29:13] No cvmfs_config command found, will try listing directly
[2026-04-30 16:29:13] CVMFS is ok
[2026-04-30 16:29:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 16:29:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 16:29:13] Further information can be found at the LHC@home message board.
[2026-04-30 16:29:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 16:29:13] Checking for apptainer binary...
[2026-04-30 16:29:13] which: no apptainer in ((null))
[2026-04-30 16:29:13] apptainer is not installed, using version from CVMFS
[2026-04-30 16:29:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 16:29:13] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-04-30 16:29:13] apptainer works
[2026-04-30 16:29:13] Set ATHENA_PROC_NUMBER=4
[2026-04-30 16:29:13] Set ATHENA_CORE_NUMBER=4
[2026-04-30 16:29:13] Starting ATLAS job with PandaID=7116253888
[2026-04-30 16:29:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-30 21:40:15]  *** The last 200 lines of the pilot log: ***
[2026-04-30 21:40:15] 2026-04-30 19:39:36,068 | INFO     | log transfer has been attempted: DONE
[2026-04-30 21:40:15] 2026-04-30 19:39:36,068 | INFO     | job 7116253888 has finished - writing final server update
[2026-04-30 21:40:15] 2026-04-30 19:39:36,069 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_384201/.job.ad'
[2026-04-30 21:40:15] 2026-04-30 19:39:36,069 | INFO     | total number of processed events: 400 (read)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,091 | INFO     | using path: /var/lib/boinc/var/slot72/slots/0/PanDA_Pilot-7116253888/memory_monitor_summary.json (trf name=prmon)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,092 | INFO     | extracted standard info from prmon json
[2026-04-30 21:40:15] 2026-04-30 19:39:36,092 | INFO     | extracted standard memory fields from prmon json
[2026-04-30 21:40:15] 2026-04-30 19:39:36,092 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-30 21:40:15] 2026-04-30 19:39:36,092 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-30 21:40:15] 2026-04-30 19:39:36,097 | INFO     | fitting pss+swap vs Time
[2026-04-30 21:40:15] 2026-04-30 19:39:36,097 | INFO     | sum of square deviations: 8797780022.996689
[2026-04-30 21:40:15] 2026-04-30 19:39:36,100 | INFO     | sum of deviations: 22190767571.193436
[2026-04-30 21:40:15] 2026-04-30 19:39:36,100 | INFO     | mean x (centered): 0.0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,100 | INFO     | mean y: 2363822.806557377
[2026-04-30 21:40:15] 2026-04-30 19:39:36,100 | INFO     | intersect: 2363822.806557377
[2026-04-30 21:40:15] 2026-04-30 19:39:36,101 | INFO     | chi2: 1.958936990510166
[2026-04-30 21:40:15] 2026-04-30 19:39:36,101 | INFO     | sum of square deviations: 8372153742.996668
[2026-04-30 21:40:15] 2026-04-30 19:39:36,104 | INFO     | sum of deviations: 39213305108.040016
[2026-04-30 21:40:15] 2026-04-30 19:39:36,104 | INFO     | mean x (centered): 0.0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,104 | INFO     | mean y: 2369836.96
[2026-04-30 21:40:15] 2026-04-30 19:39:36,104 | INFO     | intersect: 2369836.96
[2026-04-30 21:40:15] 2026-04-30 19:39:36,104 | INFO     | chi2: 1.2975524381262757
[2026-04-30 21:40:15] 2026-04-30 19:39:36,104 | INFO     | current chi2=1.2975524381262757 (change=33.76242092460798 %)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,105 | INFO     | sum of square deviations: 7960481212.996597
[2026-04-30 21:40:15] 2026-04-30 19:39:36,107 | INFO     | sum of deviations: 38214128710.783035
[2026-04-30 21:40:15] 2026-04-30 19:39:36,107 | INFO     | mean x (centered): 0.0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,107 | INFO     | mean y: 2369467.2169491528
[2026-04-30 21:40:15] 2026-04-30 19:39:36,107 | INFO     | intersect: 2369467.2169491528
[2026-04-30 21:40:15] 2026-04-30 19:39:36,108 | INFO     | chi2: 1.297899281737585
[2026-04-30 21:40:15] 2026-04-30 19:39:36,108 | INFO     | current chi2=1.297899281737585 (change=-0.026730604568865737 %)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,108 | INFO     | right removable region: 294
[2026-04-30 21:40:15] 2026-04-30 19:39:36,108 | INFO     | sum of square deviations: 8372153132.996668
[2026-04-30 21:40:15] 2026-04-30 19:39:36,110 | INFO     | sum of deviations: -16461702026.330004
[2026-04-30 21:40:15] 2026-04-30 19:39:36,110 | INFO     | mean x (centered): 0.0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,111 | INFO     | mean y: 2377552.83
[2026-04-30 21:40:15] 2026-04-30 19:39:36,111 | INFO     | intersect: 2377552.83
[2026-04-30 21:40:15] 2026-04-30 19:39:36,111 | INFO     | chi2: 0.680815893030174
[2026-04-30 21:40:15] 2026-04-30 19:39:36,111 | INFO     | current chi2=0.680815893030174 (change=65.24564616788061 %)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,112 | INFO     | sum of square deviations: 7960479992.996597
[2026-04-30 21:40:15] 2026-04-30 19:39:36,114 | INFO     | sum of deviations: -17449654878.600002
[2026-04-30 21:40:15] 2026-04-30 19:39:36,114 | INFO     | mean x (centered): 0.0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,114 | INFO     | mean y: 2377912.6
[2026-04-30 21:40:15] 2026-04-30 19:39:36,114 | INFO     | intersect: 2377912.6
[2026-04-30 21:40:15] 2026-04-30 19:39:36,114 | INFO     | chi2: 0.6776110701617892
[2026-04-30 21:40:15] 2026-04-30 19:39:36,114 | INFO     | current chi2=0.6776110701617892 (change=0.4707326754845175 %)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,115 | INFO     | left removable region: 10
[2026-04-30 21:40:15] 2026-04-30 19:39:36,115 | INFO     | sum of square deviations: 7102771558.9965105
[2026-04-30 21:40:15] 2026-04-30 19:39:36,117 | INFO     | sum of deviations: -701056877.4084494
[2026-04-30 21:40:15] 2026-04-30 19:39:36,117 | INFO     | mean x (centered): 0.0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,117 | INFO     | mean y: 2384235.408450704
[2026-04-30 21:40:15] 2026-04-30 19:39:36,117 | INFO     | intersect: 2384235.408450704
[2026-04-30 21:40:15] 2026-04-30 19:39:36,118 | INFO     | chi2: 0.005849687243995333
[2026-04-30 21:40:15] 2026-04-30 19:39:36,118 | INFO     | current memory leak: -0.10 B/s (using 284 data points, chi2=0.01)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,118 | INFO     | could have reported an average CPU frequency of 2679 MHz (14 samples)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | ..............................
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . Timing measurements:
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . get job = 0 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . initial setup = 8 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . payload setup = 15 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . stage-in = 0 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . payload execution = 18563 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . stage-out = 1 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | . log creation = 0 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,119 | INFO     | ..............................
[2026-04-30 21:40:15] 2026-04-30 19:39:36,212 | INFO     | 
[2026-04-30 21:40:15] 2026-04-30 19:39:36,212 | INFO     | job summary report
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | --------------------------------------------------
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | PanDA job id: 7116253888
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | task id: 49820244
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | errors: (none)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | pilot state: finished 
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | transexitcode: 0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | exeerrorcode: 0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | exeerrordiag: 
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | exitcode: 0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | exitmsg: OK
[2026-04-30 21:40:15] 2026-04-30 19:39:36,213 | INFO     | cpuconsumptiontime: 68909 s
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | nevents: 400
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | neventsw: 0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | pid: 2445445
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | pgrp: 2445445
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | corecount: 4
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | event service: False
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | sizes: {0: 2278309, 11: 2278309, 18582: 2311795, 18583: 2311794, 18585: 2320926, 18587: 2321064}
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | --------------------------------------------------
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | 
[2026-04-30 21:40:15] 2026-04-30 19:39:36,214 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/0
[2026-04-30 21:40:15] 2026-04-30 19:39:36,246 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,246 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | job 7116253888 has completed (purged errors)
[2026-04-30 21:40:15] 2026-04-30 19:39:36,248 | INFO     | overall cleanup function is called
[2026-04-30 21:40:15] 2026-04-30 19:39:37,260 | INFO     | --- collectZombieJob: --- 10, [2445445]
[2026-04-30 21:40:15] 2026-04-30 19:39:37,260 | INFO     | zombie collector waiting for pid 2445445
[2026-04-30 21:40:15] 2026-04-30 19:39:37,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-30 21:40:15] 2026-04-30 19:39:37,260 | INFO     | collected zombie processes
[2026-04-30 21:40:15] 2026-04-30 19:39:37,260 | INFO     | will attempt to kill all subprocesses of pid=2445445
[2026-04-30 21:40:15] 2026-04-30 19:39:37,865 | INFO     | process IDs to be killed: [2445445] (in reverse order)
[2026-04-30 21:40:15] 2026-04-30 19:39:38,173 | WARNING  | found no corresponding commands to process id(s)
[2026-04-30 21:40:15] 2026-04-30 19:39:38,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-30 21:40:15] 2026-04-30 19:39:38,201 | INFO     | did not find any defunct processes belonging to 2445445
[2026-04-30 21:40:15] 2026-04-30 19:39:38,230 | INFO     | did not find any defunct processes belonging to 2445445
[2026-04-30 21:40:15] 2026-04-30 19:39:38,230 | INFO     | Ready for new job
[2026-04-30 21:40:15] 2026-04-30 19:39:38,232 | INFO     | ***************************************
[2026-04-30 21:40:15] 2026-04-30 19:39:38,233 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-30 21:40:15] 2026-04-30 19:39:38,233 | INFO     | ***************************************
[2026-04-30 21:40:15] 2026-04-30 19:39:38,233 | INFO     | 
[2026-04-30 21:40:15] 2026-04-30 19:39:38,242 | INFO     | architecture information:
[2026-04-30 21:40:15] 2026-04-30 19:39:38,242 | INFO     | executing command: cat /etc/os-release
[2026-04-30 21:40:15] 2026-04-30 19:39:38,265 | INFO     | cat /etc/os-release:
[2026-04-30 21:40:15] NAME="CentOS Linux"
[2026-04-30 21:40:15] VERSION="7 (Core)"
[2026-04-30 21:40:15] ID="centos"
[2026-04-30 21:40:15] ID_LIKE="rhel fedora"
[2026-04-30 21:40:15] VERSION_ID="7"
[2026-04-30 21:40:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-30 21:40:15] ANSI_COLOR="0;31"
[2026-04-30 21:40:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-30 21:40:15] HOME_URL="https://www.centos.org/"
[2026-04-30 21:40:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-30 21:40:15] 
[2026-04-30 21:40:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-30 21:40:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-30 21:40:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-30 21:40:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-30 21:40:15] 
[2026-04-30 21:40:15] 2026-04-30 19:39:38,266 | INFO     | ***************************************
[2026-04-30 21:40:15] 2026-04-30 19:39:38,768 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/0
[2026-04-30 21:40:15] 2026-04-30 19:39:38,795 | INFO     | sufficient remaining disk space (73928802304 B)
[2026-04-30 21:40:15] 2026-04-30 19:39:38,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-30 21:40:15] 2026-04-30 19:39:38,796 | INFO     | current server update state: UPDATING_FINAL
[2026-04-30 21:40:15] 2026-04-30 19:39:38,796 | INFO     | update_server=False
[2026-04-30 21:40:15] 2026-04-30 19:39:38,796 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-30 21:40:15] 2026-04-30 19:39:39,166 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-30 21:40:15] 2026-04-30 19:39:39,166 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-30 21:40:15] 2026-04-30 19:39:39,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-30 21:40:15] 2026-04-30 19:39:39,166 | INFO     | will abort loop
[2026-04-30 21:40:15] 2026-04-30 19:39:39,226 | INFO     | all job control threads have been joined
[2026-04-30 21:40:15] 2026-04-30 19:39:39,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-30 21:40:15] 2026-04-30 19:39:39,325 | INFO     | all payload control threads have been joined
[2026-04-30 21:40:15] 2026-04-30 19:39:39,758 | INFO     | all data control threads have been joined
[2026-04-30 21:40:15] 2026-04-30 19:39:39,798 | INFO     | [job] retrieve thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:39,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-30 21:40:15] 2026-04-30 19:39:39,980 | INFO     | [payload] execute_payloads thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,131 | INFO     | [job] create_data_payload thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,172 | INFO     | [job] job monitor thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,231 | INFO     | [job] control thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,330 | INFO     | [payload] control thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,373 | INFO     | [data] copytool_in thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,583 | INFO     | [payload] validate_post thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,620 | INFO     | [payload] validate_pre thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,717 | INFO     | [payload] failed_post thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,763 | INFO     | [data] control thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,784 | INFO     | [job] validate thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:40,818 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:41,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-30 21:40:15] 2026-04-30 19:39:41,283 | INFO     | [data] copytool_out thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:42,227 | INFO     | [job] queue monitor thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:39:43,871 | INFO     | [data] queue_monitor thread has finished
[2026-04-30 21:40:15] 2026-04-30 19:40:08,305 | INFO     | [monitor] cgroup control has ended
[2026-04-30 21:40:15] 2026-04-30 19:40:08,523 | INFO     | PID=2437104 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-30 21:40:15] 2026-04-30 19:40:08,523 | INFO     | .. there are 27 such processes running
[2026-04-30 21:40:15] 2026-04-30 19:40:08,523 | INFO     | found 0 job(s) in 20 queues
[2026-04-30 21:40:15] 2026-04-30 19:40:08,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-30 21:40:15] 2026-04-30 19:40:08,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-30 21:40:15] 2026-04-30 19:40:10,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22810037081920)>', '<ExcThread(monitor, started 22809792476928)>']
[2026-04-30 21:40:15] 2026-04-30 19:40:10,533 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-30 21:40:15] 2026-04-30 19:40:10,533 | INFO     | [monitor] control thread has ended
[2026-04-30 21:40:15] 2026-04-30 19:40:15,305 | INFO     | all workflow threads have been joined
[2026-04-30 21:40:15] 2026-04-30 19:40:15,305 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-30 21:40:15] 2026-04-30 19:40:15,305 | INFO     | traces error code: 0
[2026-04-30 21:40:15] 2026-04-30 19:40:15,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-30 21:40:15] 2026-04-30 19:40:15,442 [wrapper] ==== pilot stdout END ====
[2026-04-30 21:40:15] 2026-04-30 19:40:15,449 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-30 21:40:15] 2026-04-30 19:40:15,453 [wrapper] pilotpid: 2437104
[2026-04-30 21:40:15] 2026-04-30 19:40:15,459 [wrapper] Pilot exit status: 0
[2026-04-30 21:40:15] 2026-04-30 19:40:15,473 [wrapper] pandaids: 7116253888
[2026-04-30 21:40:15] 2026-04-30 19:40:15,661 [wrapper] cleanup supervisor_pilot 3188872 2437105
[2026-04-30 21:40:15] 2026-04-30 19:40:15,666 [wrapper] Test setup, not cleaning
[2026-04-30 21:40:15] 2026-04-30 19:40:15,671 [wrapper] apfmon messages muted
[2026-04-30 21:40:15] 2026-04-30 19:40:15,675 [wrapper] ==== wrapper stdout END ====
[2026-04-30 21:40:15] 2026-04-30 19:40:15,679 [wrapper] ==== wrapper stderr END ====
[2026-04-30 21:40:15]  *** Error codes and diagnostics ***
[2026-04-30 21:40:15]     "exeErrorCode": 0,
[2026-04-30 21:40:15]     "pilotErrorCode": 0,
[2026-04-30 21:40:15]  *** Listing of results directory ***
[2026-04-30 21:40:15] total 2451136
[2026-04-30 21:40:15] -rwx------. 1 boinc boinc      36322 Apr 27 11:32 runpilot2-wrapper.sh
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc       5631 Apr 28 10:59 queuedata.json
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc     683926 Apr 28 10:59 pilot3.tar.gz
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc        100 Apr 30 16:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-30 21:40:15] -rwxr-xr-x. 1 boinc boinc       7986 Apr 30 16:29 run_atlas
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc        105 Apr 30 16:29 job.xml
[2026-04-30 21:40:15] -rw-r--r--. 2 boinc boinc 2229771246 Apr 30 16:29 EVNT.49820242._000052.pool.root.1
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc       6539 Apr 30 16:29 init_data.xml
[2026-04-30 21:40:15] -rw-r--r--. 2 boinc boinc      15667 Apr 30 16:29 start_atlas.sh
[2026-04-30 21:40:15] drwxrwx--x. 2 boinc boinc       4096 Apr 30 16:29 shared
[2026-04-30 21:40:15] -rw-r--r--. 2 boinc boinc     697419 Apr 30 16:29 input.tar.gz
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc          0 Apr 30 16:29 boinc_lockfile
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc       2549 Apr 30 16:29 pandaJob.out
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc     993382 Apr 30 16:29 agis_schedconf.cvmfs.json
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc        443 Apr 30 16:29 workernode_map.json
[2026-04-30 21:40:15] drwx------. 5 boinc boinc       4096 Apr 30 16:29 pilot3
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc        489 Apr 30 21:38 boinc_task_state.xml
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc  271677975 Apr 30 21:38 HITS.49820244._021668.pool.root.1
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc         95 Apr 30 21:39 pilot_heartbeat.json
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc       1029 Apr 30 21:39 memory_monitor_summary.json
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc    1510091 Apr 30 21:39 agis_ddmendpoints.agis.ALL.json
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc     505873 Apr 30 21:39 log.49820244._021668.job.log.tgz.1
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc       6378 Apr 30 21:39 heartbeat_new.json
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc       6269 Apr 30 21:39 heartbeat.json
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc       8192 Apr 30 21:40 boinc_mmap_file
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc         28 Apr 30 21:40 wrapper_checkpoint.txt
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc       5018 Apr 30 21:40 pilotlog.txt
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc    1684225 Apr 30 21:40 log.49820244._021668.job.log.1
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc        357 Apr 30 21:40 output.list
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc        410 Apr 30 21:40 runtime_log
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc    2211840 Apr 30 21:40 result.tar.gz
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc       8828 Apr 30 21:40 runtime_log.err
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc        666 Apr 30 21:40 2d40d77f2a83.diag
[2026-04-30 21:40:15] -rw-r--r--. 1 boinc boinc      20808 Apr 30 21:40 stderr.txt
[2026-04-30 21:40:15] HITS file was successfully produced:
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc 271677975 Apr 30 21:38 shared/HITS.pool.root.1
[2026-04-30 21:40:15]  *** Contents of shared directory: ***
[2026-04-30 21:40:15] total 2445692
[2026-04-30 21:40:15] -rw-r--r--. 2 boinc boinc 2229771246 Apr 30 16:29 ATLAS.root_0
[2026-04-30 21:40:15] -rw-r--r--. 2 boinc boinc      15667 Apr 30 16:29 start_atlas.sh
[2026-04-30 21:40:15] -rw-r--r--. 2 boinc boinc     697419 Apr 30 16:29 input.tar.gz
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc  271677975 Apr 30 21:38 HITS.pool.root.1
[2026-04-30 21:40:15] -rw-------. 1 boinc boinc    2211840 Apr 30 21:40 result.tar.gz
21:40:17 (2432682): run_atlas exited; CPU time 69932.159229
21:40:17 (2432682): called boinc_finish(0)

</stderr_txt>
]]>

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