Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:52 (451884): wrapper (7.7.26015): starting
00:13:52 (451884): wrapper: running run_atlas (--nthreads 9)
[2026-04-29 00:13:52] Arguments: --nthreads 9
[2026-04-29 00:13:52] Threads: 9
[2026-04-29 00:13:52] Checking for CVMFS
[2026-04-29 00:13:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 00:13:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 00:13:54] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 00:13:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 00:13:55] 2.13.3.0 13170 2177 141308 158993 2 185 24176410 40960000 29645 16776704 0 9015956 99.611 7826315 34682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-29 00:13:55] CVMFS is ok
[2026-04-29 00:13:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 00:13:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 00:13:55] Further information can be found at the LHC@home message board.
[2026-04-29 00:13:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 00:13:55] Checking for apptainer binary...
[2026-04-29 00:13:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 00:13:55] Running /usr/bin/apptainer --version
[2026-04-29 00:13:55] apptainer version 1.4.5-3.el9
[2026-04-29 00:13:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 00:13:56] c6-8-12-2.aglt2.org
[2026-04-29 00:13:56] apptainer works
[2026-04-29 00:13:56] Set ATHENA_PROC_NUMBER=9
[2026-04-29 00:13:56] Set ATHENA_CORE_NUMBER=9
[2026-04-29 00:13:56] Starting ATLAS job with PandaID=7118377784
[2026-04-29 00:13:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 05:29:30]  *** The last 200 lines of the pilot log: ***
[2026-04-29 05:29:30] 2026-04-29 09:28:46,382 | INFO     | log transfer has been attempted: DONE
[2026-04-29 05:29:30] 2026-04-29 09:28:46,382 | INFO     | job 7118377784 has finished - writing final server update
[2026-04-29 05:29:30] 2026-04-29 09:28:46,382 | INFO     | total number of processed events: 400 (read)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,392 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-7118377784/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,393 | INFO     | extracted standard info from prmon json
[2026-04-29 05:29:30] 2026-04-29 09:28:46,393 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 05:29:30] 2026-04-29 09:28:46,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 05:29:30] 2026-04-29 09:28:46,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 05:29:30] 2026-04-29 09:28:46,398 | INFO     | fitting pss+swap vs Time
[2026-04-29 05:29:30] 2026-04-29 09:28:46,399 | INFO     | sum of square deviations: 8884642496.888964
[2026-04-29 05:29:30] 2026-04-29 09:28:46,401 | INFO     | sum of deviations: -1123405514.3333778
[2026-04-29 05:29:30] 2026-04-29 09:28:46,401 | INFO     | mean x (centered): 0.0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,401 | INFO     | mean y: 2616761.156862745
[2026-04-29 05:29:30] 2026-04-29 09:28:46,401 | INFO     | intersect: 2616761.156862745
[2026-04-29 05:29:30] 2026-04-29 09:28:46,402 | INFO     | chi2: 4.0245005246250525
[2026-04-29 05:29:30] 2026-04-29 09:28:46,402 | INFO     | sum of square deviations: 8456204634.558117
[2026-04-29 05:29:30] 2026-04-29 09:28:46,404 | INFO     | sum of deviations: 19145777728.953518
[2026-04-29 05:29:30] 2026-04-29 09:28:46,405 | INFO     | mean x (centered): 0.0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,405 | INFO     | mean y: 2623881.2624584716
[2026-04-29 05:29:30] 2026-04-29 09:28:46,405 | INFO     | intersect: 2623881.2624584716
[2026-04-29 05:29:30] 2026-04-29 09:28:46,405 | INFO     | chi2: 3.352580054890482
[2026-04-29 05:29:30] 2026-04-29 09:28:46,405 | INFO     | current chi2=3.352580054890482 (change=16.695748096521136 %)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,405 | INFO     | right removable region: 300
[2026-04-29 05:29:30] 2026-04-29 09:28:46,406 | INFO     | sum of square deviations: 8456226587.661164
[2026-04-29 05:29:30] 2026-04-29 09:28:46,408 | INFO     | sum of deviations: -84577247715.30562
[2026-04-29 05:29:30] 2026-04-29 09:28:46,408 | INFO     | mean x (centered): 0.0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,408 | INFO     | mean y: 2646390.6378737544
[2026-04-29 05:29:30] 2026-04-29 09:28:46,408 | INFO     | intersect: 2646390.6378737544
[2026-04-29 05:29:30] 2026-04-29 09:28:46,409 | INFO     | chi2: 1.3315222447336343
[2026-04-29 05:29:30] 2026-04-29 09:28:46,409 | INFO     | current chi2=1.3315222447336343 (change=66.91459631856583 %)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,409 | INFO     | sum of square deviations: 8041811920.915554
[2026-04-29 05:29:30] 2026-04-29 09:28:46,411 | INFO     | sum of deviations: -106629468986.83784
[2026-04-29 05:29:30] 2026-04-29 09:28:46,412 | INFO     | mean x (centered): 0.0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,412 | INFO     | mean y: 2654490.5675675673
[2026-04-29 05:29:30] 2026-04-29 09:28:46,412 | INFO     | intersect: 2654490.5675675673
[2026-04-29 05:29:30] 2026-04-29 09:28:46,412 | INFO     | chi2: 1.096362863549494
[2026-04-29 05:29:30] 2026-04-29 09:28:46,412 | INFO     | current chi2=1.096362863549494 (change=17.66094273784987 %)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,412 | INFO     | left removable region: 10
[2026-04-29 05:29:30] 2026-04-29 09:28:46,413 | INFO     | sum of square deviations: 7562624010.055177
[2026-04-29 05:29:30] 2026-04-29 09:28:46,414 | INFO     | sum of deviations: -84930584984.78616
[2026-04-29 05:29:30] 2026-04-29 09:28:46,415 | INFO     | mean x (centered): 0.0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,415 | INFO     | mean y: 2662651.3413793105
[2026-04-29 05:29:30] 2026-04-29 09:28:46,415 | INFO     | intersect: 2662651.3413793105
[2026-04-29 05:29:30] 2026-04-29 09:28:46,415 | INFO     | chi2: 0.3961493547982305
[2026-04-29 05:29:30] 2026-04-29 09:28:46,415 | INFO     | current memory leak: -11.23 B/s (using 290 data points, chi2=0.40)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,416 | INFO     | could have reported an average CPU frequency of 3100 MHz (14 samples)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,416 | INFO     | ..............................
[2026-04-29 05:29:30] 2026-04-29 09:28:46,416 | INFO     | . Timing measurements:
[2026-04-29 05:29:30] 2026-04-29 09:28:46,416 | INFO     | . get job = 0 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,416 | INFO     | . initial setup = 44 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,416 | INFO     | . payload setup = 61 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,417 | INFO     | . stage-in = 0 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,417 | INFO     | . payload execution = 18698 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,417 | INFO     | . stage-out = 3 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,417 | INFO     | . log creation = 0 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,417 | INFO     | ..............................
[2026-04-29 05:29:30] 2026-04-29 09:28:46,542 | INFO     | 
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | job summary report
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | --------------------------------------------------
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | PanDA job id: 7118377784
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | task id: 49820244
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | errors: (none)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | pilot state: finished 
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | transexitcode: 0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,543 | INFO     | exeerrorcode: 0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | exeerrordiag: 
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | exitcode: 0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | exitmsg: OK
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | cpuconsumptiontime: 72453 s
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | nevents: 400
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | neventsw: 0
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | pid: 472270
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | pgrp: 472270
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | corecount: 9
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | event service: False
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | sizes: {0: 2280017, 1: 2280618, 2: 2280702, 3: 2280730, 4: 2280730, 6: 2282715, 7: 2282715, 18764: 2315742, 18768: 2324796, 18769: 2324934}
[2026-04-29 05:29:30] 2026-04-29 09:28:46,544 | INFO     | --------------------------------------------------
[2026-04-29 05:29:30] 2026-04-29 09:28:46,545 | INFO     | 
[2026-04-29 05:29:30] 2026-04-29 09:28:46,545 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-04-29 05:29:30] 2026-04-29 09:28:46,649 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,649 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,649 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,649 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,650 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 05:29:30] 2026-04-29 09:28:46,651 | INFO     | job 7118377784 has completed (purged errors)
[2026-04-29 05:29:30] 2026-04-29 09:28:46,651 | INFO     | overall cleanup function is called
[2026-04-29 05:29:30] 2026-04-29 09:28:47,557 | WARNING  | process 472270 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 05:29:30] 2026-04-29 09:28:47,684 | INFO     | --- collectZombieJob: --- 10, [472270]
[2026-04-29 05:29:30] 2026-04-29 09:28:47,685 | INFO     | zombie collector waiting for pid 472270
[2026-04-29 05:29:30] 2026-04-29 09:28:47,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 05:29:30] 2026-04-29 09:28:47,685 | INFO     | collected zombie processes
[2026-04-29 05:29:30] 2026-04-29 09:28:47,685 | INFO     | will attempt to kill all subprocesses of pid=472270
[2026-04-29 05:29:30] 2026-04-29 09:28:48,504 | INFO     | using path: /tmp/boinchome/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 05:29:30] 2026-04-29 09:28:48,505 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/4/PanDA_Pilot-7118377784/payload.stdout) since it has not been created yet
[2026-04-29 05:29:30] 2026-04-29 09:28:48,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-04-29 05:29:30] 2026-04-29 09:28:48,649 | INFO     | process IDs to be killed: [472270] (in reverse order)
[2026-04-29 05:29:30] 2026-04-29 09:28:48,659 | INFO     | sufficient remaining disk space (67672997888 B)
[2026-04-29 05:29:30] 2026-04-29 09:28:48,659 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-29 05:29:30] 2026-04-29 09:28:48,660 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/4/PanDA_Pilot-7118377784/HITS.49820244._026529.pool.root.1 since it does not exist
[2026-04-29 05:29:30] 2026-04-29 09:28:48,807 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 05:29:30] 2026-04-29 09:28:48,807 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 05:29:30] 2026-04-29 09:28:48,860 | INFO     | did not find any defunct processes belonging to 472270
[2026-04-29 05:29:30] 2026-04-29 09:28:48,905 | INFO     | did not find any defunct processes belonging to 472270
[2026-04-29 05:29:30] 2026-04-29 09:28:48,905 | INFO     | Ready for new job
[2026-04-29 05:29:30] 2026-04-29 09:28:48,907 | INFO     | ***************************************
[2026-04-29 05:29:30] 2026-04-29 09:28:48,907 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 05:29:30] 2026-04-29 09:28:48,907 | INFO     | ***************************************
[2026-04-29 05:29:30] 2026-04-29 09:28:48,907 | INFO     | 
[2026-04-29 05:29:30] 2026-04-29 09:28:48,910 | INFO     | architecture information:
[2026-04-29 05:29:30] 2026-04-29 09:28:48,915 | INFO     | executing command: cat /etc/os-release
[2026-04-29 05:29:30] 2026-04-29 09:28:49,022 | INFO     | cat /etc/os-release:
[2026-04-29 05:29:30] NAME="CentOS Linux"
[2026-04-29 05:29:30] VERSION="7 (Core)"
[2026-04-29 05:29:30] ID="centos"
[2026-04-29 05:29:30] ID_LIKE="rhel fedora"
[2026-04-29 05:29:30] VERSION_ID="7"
[2026-04-29 05:29:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 05:29:30] ANSI_COLOR="0;31"
[2026-04-29 05:29:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 05:29:30] HOME_URL="https://www.centos.org/"
[2026-04-29 05:29:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 05:29:30] 
[2026-04-29 05:29:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 05:29:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 05:29:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 05:29:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 05:29:30] 
[2026-04-29 05:29:30] 2026-04-29 09:28:49,022 | INFO     | ***************************************
[2026-04-29 05:29:30] 2026-04-29 09:28:49,512 | INFO     | number of running child processes to parent process 472270: 1
[2026-04-29 05:29:30] 2026-04-29 09:28:49,512 | INFO     | maximum number of monitored processes: 6
[2026-04-29 05:29:30] 2026-04-29 09:28:49,513 | INFO     | aborting job monitoring since job object (job id=7118377784) has expired
[2026-04-29 05:29:30] 2026-04-29 09:28:49,533 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-04-29 05:29:30] 2026-04-29 09:28:49,688 | INFO     | sufficient remaining disk space (67675095040 B)
[2026-04-29 05:29:30] 2026-04-29 09:28:49,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 05:29:30] 2026-04-29 09:28:49,689 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 05:29:30] 2026-04-29 09:28:49,689 | INFO     | update_server=False
[2026-04-29 05:29:30] 2026-04-29 09:28:49,689 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 05:29:30] 2026-04-29 09:28:49,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 05:29:30] 2026-04-29 09:28:49,703 | INFO     | will abort loop
[2026-04-29 05:29:30] 2026-04-29 09:28:49,880 | INFO     | all job control threads have been joined
[2026-04-29 05:29:30] 2026-04-29 09:28:49,991 | INFO     | all data control threads have been joined
[2026-04-29 05:29:30] 2026-04-29 09:28:50,116 | INFO     | all payload control threads have been joined
[2026-04-29 05:29:30] 2026-04-29 09:28:50,695 | INFO     | [job] retrieve thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:50,714 | INFO     | [job] job monitor thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:50,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 05:29:30] 2026-04-29 09:28:50,900 | INFO     | [job] control thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:50,954 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:50,998 | INFO     | [data] control thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,123 | INFO     | [payload] control thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,147 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,385 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,573 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,579 | INFO     | [job] validate thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 05:29:30] 2026-04-29 09:28:51,605 | INFO     | [payload] failed_post thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:51,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 05:29:30] 2026-04-29 09:28:51,885 | INFO     | [payload] validate_post thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:52,081 | INFO     | [data] copytool_in thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:52,606 | INFO     | [job] queue monitor thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:52,915 | INFO     | [data] copytool_out thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:28:55,627 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 05:29:30] 2026-04-29 09:29:20,179 | INFO     | PID=459974 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-29 05:29:30] 2026-04-29 09:29:20,179 | INFO     | .. there are 38 such processes running
[2026-04-29 05:29:30] 2026-04-29 09:29:20,179 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 05:29:30] 2026-04-29 09:29:20,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 05:29:30] 2026-04-29 09:29:20,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 05:29:30] 2026-04-29 09:29:23,449 | INFO     | [monitor] cgroup control has ended
[2026-04-29 05:29:30] 2026-04-29 09:29:24,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918122080064)>', '<ExcThread(monitor, started 139917384464128)>']
[2026-04-29 05:29:30] 2026-04-29 09:29:25,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 05:29:30] 2026-04-29 09:29:25,209 | INFO     | [monitor] control thread has ended
[2026-04-29 05:29:30] 2026-04-29 09:29:29,482 | INFO     | all workflow threads have been joined
[2026-04-29 05:29:30] 2026-04-29 09:29:29,483 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 05:29:30] 2026-04-29 09:29:29,483 | INFO     | traces error code: 0
[2026-04-29 05:29:30] 2026-04-29 09:29:29,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 05:29:30] 2026-04-29 09:29:30,341 [wrapper] ==== pilot stdout END ====
[2026-04-29 05:29:30] 2026-04-29 09:29:30,344 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 05:29:30] 2026-04-29 09:29:30,347 [wrapper] pilotpid: 459974
[2026-04-29 05:29:30] 2026-04-29 09:29:30,349 [wrapper] Pilot exit status: 0
[2026-04-29 05:29:30] 2026-04-29 09:29:30,409 [wrapper] pandaids: 7118377784
[2026-04-29 05:29:30] 2026-04-29 09:29:30,494 [wrapper] cleanup supervisor_pilot 1615832 459975
[2026-04-29 05:29:30] 2026-04-29 09:29:30,502 [wrapper] Test setup, not cleaning
[2026-04-29 05:29:30] 2026-04-29 09:29:30,505 [wrapper] apfmon messages muted
[2026-04-29 05:29:30] 2026-04-29 09:29:30,509 [wrapper] ==== wrapper stdout END ====
[2026-04-29 05:29:30] 2026-04-29 09:29:30,513 [wrapper] ==== wrapper stderr END ====
[2026-04-29 05:29:30]  *** Error codes and diagnostics ***
[2026-04-29 05:29:30]     "exeErrorCode": 0,
[2026-04-29 05:29:30]     "pilotErrorCode": 0,
[2026-04-29 05:29:30]  *** Listing of results directory ***
[2026-04-29 05:29:30] total 2463080
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas     683926 Apr 28 23:22 pilot3.tar.gz
[2026-04-29 05:29:30] -rwx------. 1 boincer umatlas      36322 Apr 29 00:10 runpilot2-wrapper.sh
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas       5631 Apr 29 00:10 queuedata.json
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas        100 Apr 29 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 05:29:30] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 29 00:13 run_atlas
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas        105 Apr 29 00:13 job.xml
[2026-04-29 05:29:30] -rw-r--r--. 2 boincer umatlas 2236782835 Apr 29 00:13 EVNT.49820242._000039.pool.root.1
[2026-04-29 05:29:30] -rw-r--r--. 2 boincer umatlas      15667 Apr 29 00:13 start_atlas.sh
[2026-04-29 05:29:30] drwxrwx--x. 2 boincer umatlas       4096 Apr 29 00:13 shared
[2026-04-29 05:29:30] -rw-r--r--. 2 boincer umatlas     697410 Apr 29 00:13 input.tar.gz
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas          0 Apr 29 00:13 boinc_lockfile
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas       2548 Apr 29 00:13 pandaJob.out
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas         57 Apr 29 00:13 setup.sh.local
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas    1001122 Apr 29 00:15 agis_schedconf.cvmfs.json
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas        442 Apr 29 00:15 workernode_map.json
[2026-04-29 05:29:30] drwx------. 5 boincer umatlas       4096 Apr 29 00:15 pilot3
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas  277166357 Apr 29 05:27 HITS.49820244._026529.pool.root.1
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas        490 Apr 29 05:27 boinc_task_state.xml
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas         95 Apr 29 05:28 pilot_heartbeat.json
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas       1044 Apr 29 05:28 memory_monitor_summary.json
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas    1512704 Apr 29 05:28 agis_ddmendpoints.agis.ALL.json
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas     456463 Apr 29 05:28 log.49820244._026529.job.log.tgz.1
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas       6424 Apr 29 05:28 heartbeat_new.json
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas       6315 Apr 29 05:28 heartbeat.json
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas       6756 Apr 29 05:28 init_data.xml
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas       5111 Apr 29 05:29 pilotlog.txt
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas       8192 Apr 29 05:29 boinc_mmap_file
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas         28 Apr 29 05:29 wrapper_checkpoint.txt
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas    1589430 Apr 29 05:29 log.49820244._026529.job.log.1
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas        357 Apr 29 05:29 output.list
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas        410 Apr 29 05:29 runtime_log
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas    2068480 Apr 29 05:29 result.tar.gz
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas       8970 Apr 29 05:29 runtime_log.err
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas        658 Apr 29 05:29 84a41903bb14.diag
[2026-04-29 05:29:30] -rw-r--r--. 1 boincer umatlas      21414 Apr 29 05:29 stderr.txt
[2026-04-29 05:29:30] HITS file was successfully produced:
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas 277166357 Apr 29 05:27 shared/HITS.pool.root.1
[2026-04-29 05:29:30]  *** Contents of shared directory: ***
[2026-04-29 05:29:30] total 2457760
[2026-04-29 05:29:30] -rw-r--r--. 2 boincer umatlas 2236782835 Apr 29 00:13 ATLAS.root_0
[2026-04-29 05:29:30] -rw-r--r--. 2 boincer umatlas      15667 Apr 29 00:13 start_atlas.sh
[2026-04-29 05:29:30] -rw-r--r--. 2 boincer umatlas     697410 Apr 29 00:13 input.tar.gz
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas  277166357 Apr 29 05:27 HITS.pool.root.1
[2026-04-29 05:29:30] -rw-------. 1 boincer umatlas    2068480 Apr 29 05:29 result.tar.gz
05:29:32 (451884): run_atlas exited; CPU time 72914.931971
05:29:32 (451884): called boinc_finish(0)

</stderr_txt>
]]>

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