Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:36 (2620651): wrapper (7.7.26015): starting
00:01:36 (2620651): wrapper: running run_atlas (--nthreads 8)
[2026-04-29 00:01:36] Arguments: --nthreads 8
[2026-04-29 00:01:36] Threads: 8
[2026-04-29 00:01:36] Checking for CVMFS
[2026-04-29 00:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 00:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 00:01:37] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 00:01:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 00:01:39] 2.13.3.0 15513 251251 897660 158992 3 556 24918848 40960000 42884 16776704 0 2061451102 99.830 911165878 29933 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-29 00:01:39] CVMFS is ok
[2026-04-29 00:01:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 00:01:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 00:01:39] Further information can be found at the LHC@home message board.
[2026-04-29 00:01:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 00:01:39] Checking for apptainer binary...
[2026-04-29 00:01:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 00:01:39] Running /usr/bin/apptainer --version
[2026-04-29 00:01:39] apptainer version 1.4.5-3.el9
[2026-04-29 00:01:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 00:01:40] c-1-1.aglt2.org
[2026-04-29 00:01:40] apptainer works
[2026-04-29 00:01:40] Set ATHENA_PROC_NUMBER=8
[2026-04-29 00:01:40] Set ATHENA_CORE_NUMBER=8
[2026-04-29 00:01:40] Starting ATLAS job with PandaID=7118280754
[2026-04-29 00:01:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 17:12:16]  *** The last 200 lines of the pilot log: ***
[2026-04-29 17:12:16] 2026-04-29 20:55:50,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 17:12:16] 2026-04-29 20:55:51,580 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 17:12:16] 2026-04-29 20:55:52,399 | INFO     | job 7118280754 has state=finished
[2026-04-29 17:12:16] 2026-04-29 20:55:52,399 | INFO     | preparing for final server update for job 7118280754 in state='finished'
[2026-04-29 17:12:16] 2026-04-29 20:55:52,400 | INFO     | reading metadata from: /tmp/boinchome/slots/9/PanDA_Pilot-7118280754/jobReport.json
[2026-04-29 17:12:16] 2026-04-29 20:55:52,402 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/9/workernode_map.json
[2026-04-29 17:12:16] 2026-04-29 20:55:52,403 | INFO     | this job has now completed (state=finished)
[2026-04-29 17:12:16] 2026-04-29 20:55:52,403 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 17:12:16] 2026-04-29 20:55:52,403 | INFO     | log transfer has been attempted: DONE
[2026-04-29 17:12:16] 2026-04-29 20:55:52,403 | INFO     | job 7118280754 has finished - writing final server update
[2026-04-29 17:12:16] 2026-04-29 20:55:52,403 | INFO     | total number of processed events: 400 (read)
[2026-04-29 17:12:16] 2026-04-29 20:55:52,484 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-7118280754/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 17:12:16] 2026-04-29 20:55:52,485 | INFO     | extracted standard info from prmon json
[2026-04-29 17:12:16] 2026-04-29 20:55:52,485 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 17:12:16] 2026-04-29 20:55:52,485 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 17:12:16] 2026-04-29 20:55:52,485 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 17:12:16] 2026-04-29 20:55:52,569 | INFO     | fitting pss+swap vs Time
[2026-04-29 17:12:16] 2026-04-29 20:55:52,570 | INFO     | sum of square deviations: 303611213347.8492
[2026-04-29 17:12:16] 2026-04-29 20:55:52,721 | INFO     | sum of deviations: 836020518847.7526
[2026-04-29 17:12:16] 2026-04-29 20:55:52,722 | INFO     | mean x (centered): 0.0
[2026-04-29 17:12:16] 2026-04-29 20:55:52,722 | INFO     | mean y: 2505417.3152064453
[2026-04-29 17:12:16] 2026-04-29 20:55:52,722 | INFO     | intersect: 2505417.3152064453
[2026-04-29 17:12:16] 2026-04-29 20:55:52,741 | INFO     | chi2: 5.340070256664774
[2026-04-29 17:12:16] 2026-04-29 20:55:52,743 | INFO     | sum of square deviations: 299047972317.6304
[2026-04-29 17:12:16] 2026-04-29 20:55:52,877 | INFO     | sum of deviations: 901901934155.3623
[2026-04-29 17:12:16] 2026-04-29 20:55:52,877 | INFO     | mean x (centered): 0.0
[2026-04-29 17:12:16] 2026-04-29 20:55:52,877 | INFO     | mean y: 2507609.2591093117
[2026-04-29 17:12:16] 2026-04-29 20:55:52,877 | INFO     | intersect: 2507609.2591093117
[2026-04-29 17:12:16] 2026-04-29 20:55:52,878 | INFO     | chi2: 4.467754202209658
[2026-04-29 17:12:16] 2026-04-29 20:55:52,879 | INFO     | current chi2=4.467754202209658 (change=16.335291719550046 %)
[2026-04-29 17:12:16] 2026-04-29 20:55:52,879 | INFO     | right removable region: 987
[2026-04-29 17:12:16] 2026-04-29 20:55:52,880 | INFO     | sum of square deviations: 299047846047.6301
[2026-04-29 17:12:16] 2026-04-29 20:55:52,970 | INFO     | sum of deviations: 519254826652.85474
[2026-04-29 17:12:16] 2026-04-29 20:55:52,971 | INFO     | mean x (centered): 0.0
[2026-04-29 17:12:16] 2026-04-29 20:55:52,971 | INFO     | mean y: 2515997.696356275
[2026-04-29 17:12:16] 2026-04-29 20:55:52,971 | INFO     | intersect: 2515997.696356275
[2026-04-29 17:12:16] 2026-04-29 20:55:52,972 | INFO     | chi2: 1.6969682001042181
[2026-04-29 17:12:16] 2026-04-29 20:55:52,972 | INFO     | current chi2=1.6969682001042181 (change=68.2219873795427 %)
[2026-04-29 17:12:16] 2026-04-29 20:55:52,973 | INFO     | sum of square deviations: 294530493608.8299
[2026-04-29 17:12:16] 2026-04-29 20:55:53,109 | INFO     | monitor loop #3349: job 0:7118280754 is in state 'finished'
[2026-04-29 17:12:16] 2026-04-29 20:55:53,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 17:12:16] 2026-04-29 20:55:53,127 | INFO     | sum of deviations: 410386625425.90063
[2026-04-29 17:12:16] 2026-04-29 20:55:53,127 | INFO     | mean x (centered): 0.0
[2026-04-29 17:12:16] 2026-04-29 20:55:53,127 | INFO     | mean y: 2519670.11698881
[2026-04-29 17:12:16] 2026-04-29 20:55:53,127 | INFO     | intersect: 2519670.11698881
[2026-04-29 17:12:16] 2026-04-29 20:55:53,160 | INFO     | chi2: 1.2732721975106505
[2026-04-29 17:12:16] 2026-04-29 20:55:53,160 | INFO     | current chi2=1.2732721975106505 (change=24.967822176487847 %)
[2026-04-29 17:12:16] 2026-04-29 20:55:53,160 | INFO     | left removable region: 10
[2026-04-29 17:12:16] 2026-04-29 20:55:53,161 | INFO     | sum of square deviations: 289170081520.56537
[2026-04-29 17:12:16] 2026-04-29 20:55:53,251 | INFO     | sum of deviations: 476872159797.3403
[2026-04-29 17:12:16] 2026-04-29 20:55:53,251 | INFO     | mean x (centered): 0.0
[2026-04-29 17:12:16] 2026-04-29 20:55:53,251 | INFO     | mean y: 2521927.4206755375
[2026-04-29 17:12:16] 2026-04-29 20:55:53,251 | INFO     | intersect: 2521927.4206755375
[2026-04-29 17:12:16] 2026-04-29 20:55:53,293 | INFO     | chi2: 0.3883337454906279
[2026-04-29 17:12:16] 2026-04-29 20:55:53,293 | INFO     | current memory leak: 1.65 B/s (using 977 data points, chi2=0.39)
[2026-04-29 17:12:16] 2026-04-29 20:55:53,294 | INFO     | could have reported an average CPU frequency of 2958 MHz (37 samples)
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | ..............................
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . Timing measurements:
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . get job = 0 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . initial setup = 38 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . payload setup = 101 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . stage-in = 0 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . payload execution = 60601 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . stage-out = 8 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | . log creation = 1 s
[2026-04-29 17:12:16] 2026-04-29 20:55:53,295 | INFO     | ..............................
[2026-04-29 17:12:16] 2026-04-29 20:55:54,163 | INFO     | 
[2026-04-29 17:12:16] 2026-04-29 20:55:54,163 | INFO     | job summary report
[2026-04-29 17:12:16] 2026-04-29 20:55:54,163 | INFO     | --------------------------------------------------
[2026-04-29 17:12:16] 2026-04-29 20:55:54,163 | INFO     | PanDA job id: 7118280754
[2026-04-29 17:12:16] 2026-04-29 20:55:54,163 | INFO     | task id: 49863752
[2026-04-29 17:12:16] 2026-04-29 20:55:54,163 | INFO     | errors: (none)
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | pilot state: finished 
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | transexitcode: 0
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | exeerrorcode: 0
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | exeerrordiag: 
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | exitcode: 0
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | exitmsg: OK
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | cpuconsumptiontime: 61050 s
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | nevents: 400
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | neventsw: 0
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | pid: 2707838
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | pgrp: 2707838
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | corecount: 8
[2026-04-29 17:12:16] 2026-04-29 20:55:54,164 | INFO     | event service: False
[2026-04-29 17:12:16] 2026-04-29 20:55:54,165 | INFO     | sizes: {0: 2280068, 1: 2280669, 2: 2280781, 3: 2282610, 4: 2282610, 15: 2282610, 60707: 2333863, 60708: 2333862, 60718: 2342916, 60721: 2342972, 60723: 2343166}
[2026-04-29 17:12:16] 2026-04-29 20:55:54,165 | INFO     | --------------------------------------------------
[2026-04-29 17:12:16] 2026-04-29 20:55:54,165 | INFO     | 
[2026-04-29 17:12:16] 2026-04-29 20:55:54,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2026-04-29 17:12:16] 2026-04-29 20:55:54,397 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,397 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,398 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,399 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 17:12:16] 2026-04-29 20:55:54,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,399 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 17:12:16] 2026-04-29 20:55:54,399 | INFO     | job 7118280754 has completed (purged errors)
[2026-04-29 17:12:16] 2026-04-29 20:55:54,399 | INFO     | overall cleanup function is called
[2026-04-29 17:12:16] 2026-04-29 20:55:55,418 | INFO     | --- collectZombieJob: --- 10, [2707838]
[2026-04-29 17:12:16] 2026-04-29 20:55:55,418 | INFO     | zombie collector waiting for pid 2707838
[2026-04-29 17:12:16] 2026-04-29 20:55:55,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 17:12:16] 2026-04-29 20:55:55,418 | INFO     | collected zombie processes
[2026-04-29 17:12:16] 2026-04-29 20:55:55,418 | INFO     | will attempt to kill all subprocesses of pid=2707838
[2026-04-29 17:12:16] 2026-04-29 20:55:58,323 | INFO     | process IDs to be killed: [2707838] (in reverse order)
[2026-04-29 17:12:16] 2026-04-29 20:55:58,667 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 17:12:16] 2026-04-29 20:55:58,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 17:12:16] 2026-04-29 20:55:58,767 | INFO     | did not find any defunct processes belonging to 2707838
[2026-04-29 17:12:16] 2026-04-29 20:55:58,874 | INFO     | did not find any defunct processes belonging to 2707838
[2026-04-29 17:12:16] 2026-04-29 20:55:58,874 | INFO     | Ready for new job
[2026-04-29 17:12:16] 2026-04-29 20:55:58,887 | INFO     | ***************************************
[2026-04-29 17:12:16] 2026-04-29 20:55:58,888 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 17:12:16] 2026-04-29 20:55:58,888 | INFO     | ***************************************
[2026-04-29 17:12:16] 2026-04-29 20:55:58,888 | INFO     | 
[2026-04-29 17:12:16] 2026-04-29 20:55:58,894 | INFO     | architecture information:
[2026-04-29 17:12:16] 2026-04-29 20:55:58,894 | INFO     | executing command: cat /etc/os-release
[2026-04-29 17:12:16] 2026-04-29 20:55:58,994 | INFO     | cat /etc/os-release:
[2026-04-29 17:12:16] NAME="CentOS Linux"
[2026-04-29 17:12:16] VERSION="7 (Core)"
[2026-04-29 17:12:16] ID="centos"
[2026-04-29 17:12:16] ID_LIKE="rhel fedora"
[2026-04-29 17:12:16] VERSION_ID="7"
[2026-04-29 17:12:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 17:12:16] ANSI_COLOR="0;31"
[2026-04-29 17:12:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 17:12:16] HOME_URL="https://www.centos.org/"
[2026-04-29 17:12:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 17:12:16] 
[2026-04-29 17:12:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 17:12:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 17:12:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 17:12:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 17:12:16] 
[2026-04-29 17:12:16] 2026-04-29 20:55:58,995 | INFO     | ***************************************
[2026-04-29 17:12:16] 2026-04-29 20:55:59,498 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2026-04-29 17:12:16] 2026-04-29 20:55:59,668 | INFO     | sufficient remaining disk space (104237891584 B)
[2026-04-29 17:12:16] 2026-04-29 20:55:59,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 17:12:16] 2026-04-29 20:55:59,669 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 17:12:16] 2026-04-29 20:55:59,669 | INFO     | update_server=False
[2026-04-29 17:12:16] 2026-04-29 20:55:59,669 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 17:12:16] 2026-04-29 20:55:59,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 17:12:16] 2026-04-29 20:55:59,672 | INFO     | aborting loop
[2026-04-29 17:12:16] 2026-04-29 20:55:59,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 17:12:16] 2026-04-29 20:55:59,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 17:12:16] 2026-04-29 20:56:00,191 | INFO     | all job control threads have been joined
[2026-04-29 17:12:16] 2026-04-29 20:56:00,375 | INFO     | all data control threads have been joined
[2026-04-29 17:12:16] 2026-04-29 20:56:00,477 | INFO     | all payload control threads have been joined
[2026-04-29 17:12:16] 2026-04-29 20:56:00,682 | INFO     | [job] job monitor thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,683 | INFO     | [job] retrieve thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,683 | INFO     | [job] queue monitor thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,709 | INFO     | [data] copytool_in thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,709 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,773 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,782 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:00,832 | INFO     | [job] validate thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,197 | INFO     | [job] control thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,381 | INFO     | [data] control thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,483 | INFO     | [payload] control thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,865 | INFO     | [payload] validate_post thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,899 | INFO     | [payload] failed_post thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,924 | INFO     | [data] copytool_out thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:01,976 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:02,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 17:12:16] 2026-04-29 20:56:06,889 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 17:12:16] 2026-04-29 20:56:27,845 | INFO     | [monitor] cgroup control has ended
[2026-04-29 17:12:16] 2026-04-29 20:56:28,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974511155008)>', '<ExcThread(monitor, started 139974158563072)>']
[2026-04-29 17:12:16] 2026-04-29 20:56:28,151 | INFO     | PID=2651711 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 17:12:16] 2026-04-29 20:56:28,151 | INFO     | .. there are 70 such processes running
[2026-04-29 17:12:16] 2026-04-29 20:56:28,158 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 17:12:16] 2026-04-29 20:56:28,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 17:12:16] 2026-04-29 20:56:28,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 17:12:16] 2026-04-29 20:56:28,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 17:12:16] 2026-04-29 20:56:28,158 | INFO     | [monitor] control thread has ended
[2026-04-29 17:12:16] 2026-04-29 20:56:33,176 | INFO     | all workflow threads have been joined
[2026-04-29 17:12:16] 2026-04-29 20:56:33,177 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 17:12:16] 2026-04-29 20:56:33,178 | INFO     | traces error code: 0
[2026-04-29 17:12:16] 2026-04-29 20:56:33,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 17:12:16] 2026-04-29 20:56:34,611 [wrapper] ==== pilot stdout END ====
[2026-04-29 17:12:16] 2026-04-29 20:56:34,639 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 17:12:16] 2026-04-29 20:56:34,668 [wrapper] pilotpid: 2651711
[2026-04-29 17:12:16] 2026-04-29 20:56:34,703 [wrapper] Pilot exit status: 0
[2026-04-29 17:12:16] 2026-04-29 20:56:34,797 [wrapper] pandaids: 7118280754
[2026-04-29 17:12:16] 2026-04-29 20:56:35,477 [wrapper] cleanup supervisor_pilot  272942 2651712
[2026-04-29 17:12:16] 2026-04-29 20:56:35,491 [wrapper] Test setup, not cleaning
[2026-04-29 17:12:16] 2026-04-29 20:56:35,503 [wrapper] apfmon messages muted
[2026-04-29 17:12:16] 2026-04-29 20:56:35,525 [wrapper] ==== wrapper stdout END ====
[2026-04-29 17:12:16] 2026-04-29 20:56:35,577 [wrapper] ==== wrapper stderr END ====
[2026-04-29 17:12:16]  *** Error codes and diagnostics ***
[2026-04-29 17:12:16]     "exeErrorCode": 0,
[2026-04-29 17:12:16]     "pilotErrorCode": 0,
[2026-04-29 17:12:16]  *** Listing of results directory ***
[2026-04-29 17:12:16] total 475120
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas    683926 Apr 28 23:22 pilot3.tar.gz
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas      5631 Apr 28 23:26 queuedata.json
[2026-04-29 17:12:16] -rwx------. 1 boincer umatlas     36322 Apr 28 23:26 runpilot2-wrapper.sh
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas       100 Apr 29 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 17:12:16] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 29 00:01 run_atlas
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas       105 Apr 29 00:01 job.xml
[2026-04-29 17:12:16] -rw-r--r--. 2 boincer umatlas 257034420 Apr 29 00:01 EVNT.49863749._000141.pool.root.1
[2026-04-29 17:12:16] -rw-r--r--. 2 boincer umatlas     15667 Apr 29 00:01 start_atlas.sh
[2026-04-29 17:12:16] drwxrwx--x. 2 boincer umatlas      4096 Apr 29 00:01 shared
[2026-04-29 17:12:16] -rw-r--r--. 2 boincer umatlas    697419 Apr 29 00:01 input.tar.gz
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas         0 Apr 29 00:01 boinc_lockfile
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas      2587 Apr 29 00:01 pandaJob.out
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas        57 Apr 29 00:01 setup.sh.local
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas   1001122 Apr 29 00:02 agis_schedconf.cvmfs.json
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas       438 Apr 29 00:03 workernode_map.json
[2026-04-29 17:12:16] drwx------. 5 boincer umatlas      4096 Apr 29 00:03 pilot3
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas 214692054 Apr 29 16:54 HITS.49863752._003517.pool.root.1
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas       487 Apr 29 16:54 boinc_task_state.xml
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas      1044 Apr 29 16:55 memory_monitor_summary.json
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas   1512704 Apr 29 16:55 agis_ddmendpoints.agis.ALL.json
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas    759517 Apr 29 16:55 log.49863752._003517.job.log.tgz.1
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas      6401 Apr 29 16:55 heartbeat_new.json
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas      6292 Apr 29 16:55 heartbeat.json
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas        95 Apr 29 16:56 pilot_heartbeat.json
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas      4824 Apr 29 16:56 pilotlog.txt
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas   4565575 Apr 29 16:56 log.49863752._003517.job.log.1
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas       357 Apr 29 16:56 output.list
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas       410 Apr 29 16:56 runtime_log
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas   5345280 Apr 29 16:56 result.tar.gz
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas      8950 Apr 29 16:56 runtime_log.err
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas       654 Apr 29 16:56 7a537a1fc3c3.diag
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas      6756 Apr 29 17:09 init_data.xml
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas      8192 Apr 29 17:12 boinc_mmap_file
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas        27 Apr 29 17:12 wrapper_checkpoint.txt
[2026-04-29 17:12:16] -rw-r--r--. 1 boincer umatlas     21338 Apr 29 17:12 stderr.txt
[2026-04-29 17:12:16] HITS file was successfully produced:
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas 214692054 Apr 29 16:54 shared/HITS.pool.root.1
[2026-04-29 17:12:16]  *** Contents of shared directory: ***
[2026-04-29 17:12:16] total 466600
[2026-04-29 17:12:16] -rw-r--r--. 2 boincer umatlas 257034420 Apr 29 00:01 ATLAS.root_0
[2026-04-29 17:12:16] -rw-r--r--. 2 boincer umatlas     15667 Apr 29 00:01 start_atlas.sh
[2026-04-29 17:12:16] -rw-r--r--. 2 boincer umatlas    697419 Apr 29 00:01 input.tar.gz
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas 214692054 Apr 29 16:54 HITS.pool.root.1
[2026-04-29 17:12:16] -rw-------. 1 boincer umatlas   5345280 Apr 29 16:56 result.tar.gz
17:12:18 (2620651): run_atlas exited; CPU time 64899.078853
17:12:18 (2620651): called boinc_finish(0)

</stderr_txt>
]]>

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