Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:19 (3509009): wrapper (7.7.26015): starting
00:04:19 (3509009): wrapper: running run_atlas (--nthreads 12)
[2026-04-29 00:04:19] Arguments: --nthreads 12
[2026-04-29 00:04:19] Threads: 12
[2026-04-29 00:04:19] Checking for CVMFS
[2026-04-29 00:04:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 00:04:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 00:04:21] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 00:04:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 00:04:22] 2.13.3.0 6825 180805 133944 158992 2 24 39072657 40960001 13093 16776704 0 253693309 99.675 290745361 37158 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-29 00:04:22] CVMFS is ok
[2026-04-29 00:04:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 00:04:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 00:04:22] Further information can be found at the LHC@home message board.
[2026-04-29 00:04:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 00:04:22] Checking for apptainer binary...
[2026-04-29 00:04:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 00:04:22] Running /usr/bin/apptainer --version
[2026-04-29 00:04:22] apptainer version 1.4.5-3.el9
[2026-04-29 00:04:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 00:04:24] c-210-31-2.aglt2.org
[2026-04-29 00:04:24] apptainer works
[2026-04-29 00:04:24] Set ATHENA_PROC_NUMBER=12
[2026-04-29 00:04:24] Set ATHENA_CORE_NUMBER=12
[2026-04-29 00:04:25] Starting ATLAS job with PandaID=7118212083
[2026-04-29 00:04:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 08:11:29]  *** The last 200 lines of the pilot log: ***
[2026-04-29 08:11:29] 2026-04-29 12:10:27,276 | INFO     | monitor loop #1802: job 0:7118212083 is in state 'finished'
[2026-04-29 08:11:29] 2026-04-29 12:10:27,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 08:11:29] 2026-04-29 12:10:27,879 | INFO     | job 7118212083 has state=finished
[2026-04-29 08:11:29] 2026-04-29 12:10:27,880 | INFO     | preparing for final server update for job 7118212083 in state='finished'
[2026-04-29 08:11:29] 2026-04-29 12:10:27,880 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-7118212083/jobReport.json
[2026-04-29 08:11:29] 2026-04-29 12:10:27,882 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-04-29 08:11:29] 2026-04-29 12:10:27,883 | INFO     | this job has now completed (state=finished)
[2026-04-29 08:11:29] 2026-04-29 12:10:27,883 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 08:11:29] 2026-04-29 12:10:27,883 | INFO     | log transfer has been attempted: DONE
[2026-04-29 08:11:29] 2026-04-29 12:10:27,883 | INFO     | job 7118212083 has finished - writing final server update
[2026-04-29 08:11:29] 2026-04-29 12:10:27,883 | INFO     | total number of processed events: 400 (read)
[2026-04-29 08:11:29] 2026-04-29 12:10:27,998 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7118212083/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 08:11:29] 2026-04-29 12:10:28,020 | INFO     | extracted standard info from prmon json
[2026-04-29 08:11:29] 2026-04-29 12:10:28,021 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 08:11:29] 2026-04-29 12:10:28,021 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 08:11:29] 2026-04-29 12:10:28,021 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 08:11:29] 2026-04-29 12:10:28,064 | INFO     | fitting pss+swap vs Time
[2026-04-29 08:11:29] 2026-04-29 12:10:28,096 | INFO     | sum of square deviations: 33229815526.896893
[2026-04-29 08:11:29] 2026-04-29 12:10:28,131 | INFO     | sum of deviations: 362349543607.2375
[2026-04-29 08:11:29] 2026-04-29 12:10:28,131 | INFO     | mean x (centered): 0.0
[2026-04-29 08:11:29] 2026-04-29 12:10:28,131 | INFO     | mean y: 2658086.296842105
[2026-04-29 08:11:29] 2026-04-29 12:10:28,132 | INFO     | intersect: 2658086.296842105
[2026-04-29 08:11:29] 2026-04-29 12:10:28,132 | INFO     | chi2: 4.170506974911523
[2026-04-29 08:11:29] 2026-04-29 12:10:28,133 | INFO     | sum of square deviations: 32191564256.810516
[2026-04-29 08:11:29] 2026-04-29 12:10:28,201 | INFO     | sum of deviations: 389552888791.1682
[2026-04-29 08:11:29] 2026-04-29 12:10:28,201 | INFO     | mean x (centered): 0.0
[2026-04-29 08:11:29] 2026-04-29 12:10:28,201 | INFO     | mean y: 2662039.985106383
[2026-04-29 08:11:29] 2026-04-29 12:10:28,201 | INFO     | intersect: 2662039.985106383
[2026-04-29 08:11:29] 2026-04-29 12:10:28,202 | INFO     | chi2: 3.4554555369675746
[2026-04-29 08:11:29] 2026-04-29 12:10:28,202 | INFO     | current chi2=3.4554555369675746 (change=17.145432012114497 %)
[2026-04-29 08:11:29] 2026-04-29 12:10:28,202 | INFO     | right removable region: 469
[2026-04-29 08:11:29] 2026-04-29 12:10:28,203 | INFO     | sum of square deviations: 32191266823.755417
[2026-04-29 08:11:29] 2026-04-29 12:10:28,239 | INFO     | sum of deviations: 230223367838.12793
[2026-04-29 08:11:29] 2026-04-29 12:10:28,240 | INFO     | mean x (centered): 0.0
[2026-04-29 08:11:29] 2026-04-29 12:10:28,240 | INFO     | mean y: 2677455.2170212767
[2026-04-29 08:11:29] 2026-04-29 12:10:28,240 | INFO     | intersect: 2677455.2170212767
[2026-04-29 08:11:29] 2026-04-29 12:10:28,262 | INFO     | chi2: 1.6187735688268523
[2026-04-29 08:11:29] 2026-04-29 12:10:28,262 | INFO     | current chi2=1.6187735688268523 (change=61.18520893107499 %)
[2026-04-29 08:11:29] 2026-04-29 12:10:28,263 | INFO     | sum of square deviations: 31174693677.44957
[2026-04-29 08:11:29] 2026-04-29 12:10:28,310 | INFO     | sum of deviations: 187795283325.54587
[2026-04-29 08:11:29] 2026-04-29 12:10:28,310 | INFO     | mean x (centered): 0.0
[2026-04-29 08:11:29] 2026-04-29 12:10:28,310 | INFO     | mean y: 2683814.040860215
[2026-04-29 08:11:29] 2026-04-29 12:10:28,310 | INFO     | intersect: 2683814.040860215
[2026-04-29 08:11:29] 2026-04-29 12:10:28,311 | INFO     | chi2: 1.4186820855131286
[2026-04-29 08:11:29] 2026-04-29 12:10:28,311 | INFO     | current chi2=1.4186820855131286 (change=12.36068386381752 %)
[2026-04-29 08:11:29] 2026-04-29 12:10:28,311 | INFO     | left removable region: 10
[2026-04-29 08:11:29] 2026-04-29 12:10:28,311 | INFO     | sum of square deviations: 29983551182.18732
[2026-04-29 08:11:29] 2026-04-29 12:10:28,391 | INFO     | sum of deviations: 215356504737.59464
[2026-04-29 08:11:29] 2026-04-29 12:10:28,391 | INFO     | mean x (centered): 0.0
[2026-04-29 08:11:29] 2026-04-29 12:10:28,391 | INFO     | mean y: 2687993.6209150325
[2026-04-29 08:11:29] 2026-04-29 12:10:28,391 | INFO     | intersect: 2687993.6209150325
[2026-04-29 08:11:29] 2026-04-29 12:10:28,392 | INFO     | chi2: 0.6935989958191175
[2026-04-29 08:11:29] 2026-04-29 12:10:28,392 | INFO     | current memory leak: 7.18 B/s (using 459 data points, chi2=0.69)
[2026-04-29 08:11:29] 2026-04-29 12:10:28,392 | INFO     | could have reported an average CPU frequency of 2755 MHz (20 samples)
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | ..............................
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . Timing measurements:
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . get job = 0 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . initial setup = 52 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . payload setup = 61 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . stage-in = 0 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . payload execution = 28951 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . stage-out = 4 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | . log creation = 0 s
[2026-04-29 08:11:29] 2026-04-29 12:10:28,393 | INFO     | ..............................
[2026-04-29 08:11:29] 2026-04-29 12:10:29,090 | INFO     | 
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | job summary report
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | --------------------------------------------------
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | PanDA job id: 7118212083
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | task id: 49863851
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | errors: (none)
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | pilot state: finished 
[2026-04-29 08:11:29] 2026-04-29 12:10:29,091 | INFO     | transexitcode: 0
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | exeerrorcode: 0
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | exeerrordiag: 
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | exitcode: 0
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | exitmsg: OK
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | cpuconsumptiontime: 61294 s
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | nevents: 400
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | neventsw: 0
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | pid: 3522583
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | pgrp: 3522583
[2026-04-29 08:11:29] 2026-04-29 12:10:29,092 | INFO     | corecount: 12
[2026-04-29 08:11:29] 2026-04-29 12:10:29,093 | INFO     | event service: False
[2026-04-29 08:11:29] 2026-04-29 12:10:29,093 | INFO     | sizes: {0: 2280674, 1: 2280758, 2: 2280758, 3: 2281159, 4: 2281159, 5: 2282615, 15: 2282799, 29017: 2320347, 29018: 2320346, 29023: 2329400, 29025: 2329456, 29027:
[2026-04-29 08:11:29] 2026-04-29 12:10:29,093 | INFO     | --------------------------------------------------
[2026-04-29 08:11:29] 2026-04-29 12:10:29,093 | INFO     | 
[2026-04-29 08:11:29] 2026-04-29 12:10:29,093 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 08:11:29] 2026-04-29 12:10:29,217 | INFO     | job 7118212083 has completed (purged errors)
[2026-04-29 08:11:29] 2026-04-29 12:10:29,218 | INFO     | overall cleanup function is called
[2026-04-29 08:11:29] 2026-04-29 12:10:30,244 | INFO     | --- collectZombieJob: --- 10, [3522583]
[2026-04-29 08:11:29] 2026-04-29 12:10:30,245 | INFO     | zombie collector waiting for pid 3522583
[2026-04-29 08:11:29] 2026-04-29 12:10:30,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 08:11:29] 2026-04-29 12:10:30,245 | INFO     | collected zombie processes
[2026-04-29 08:11:29] 2026-04-29 12:10:30,245 | INFO     | will attempt to kill all subprocesses of pid=3522583
[2026-04-29 08:11:29] 2026-04-29 12:10:30,646 | INFO     | process IDs to be killed: [3522583] (in reverse order)
[2026-04-29 08:11:29] 2026-04-29 12:10:30,868 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 08:11:29] 2026-04-29 12:10:30,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 08:11:29] 2026-04-29 12:10:30,958 | INFO     | did not find any defunct processes belonging to 3522583
[2026-04-29 08:11:29] 2026-04-29 12:10:31,025 | INFO     | did not find any defunct processes belonging to 3522583
[2026-04-29 08:11:29] 2026-04-29 12:10:31,026 | INFO     | Ready for new job
[2026-04-29 08:11:29] 2026-04-29 12:10:31,061 | INFO     | ***************************************
[2026-04-29 08:11:29] 2026-04-29 12:10:31,062 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 08:11:29] 2026-04-29 12:10:31,062 | INFO     | ***************************************
[2026-04-29 08:11:29] 2026-04-29 12:10:31,062 | INFO     | 
[2026-04-29 08:11:29] 2026-04-29 12:10:31,085 | INFO     | architecture information:
[2026-04-29 08:11:29] 2026-04-29 12:10:31,100 | INFO     | executing command: cat /etc/os-release
[2026-04-29 08:11:29] 2026-04-29 12:10:31,209 | INFO     | cat /etc/os-release:
[2026-04-29 08:11:29] NAME="CentOS Linux"
[2026-04-29 08:11:29] VERSION="7 (Core)"
[2026-04-29 08:11:29] ID="centos"
[2026-04-29 08:11:29] ID_LIKE="rhel fedora"
[2026-04-29 08:11:29] VERSION_ID="7"
[2026-04-29 08:11:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 08:11:29] ANSI_COLOR="0;31"
[2026-04-29 08:11:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 08:11:29] HOME_URL="https://www.centos.org/"
[2026-04-29 08:11:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 08:11:29] 
[2026-04-29 08:11:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 08:11:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 08:11:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 08:11:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 08:11:29] 
[2026-04-29 08:11:29] 2026-04-29 12:10:31,209 | INFO     | ***************************************
[2026-04-29 08:11:29] 2026-04-29 12:10:31,713 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-04-29 08:11:29] 2026-04-29 12:10:31,850 | INFO     | sufficient remaining disk space (74500276224 B)
[2026-04-29 08:11:29] 2026-04-29 12:10:31,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 08:11:29] 2026-04-29 12:10:31,850 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 08:11:29] 2026-04-29 12:10:31,850 | INFO     | update_server=False
[2026-04-29 08:11:29] 2026-04-29 12:10:31,850 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 08:11:29] 2026-04-29 12:10:31,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 08:11:29] 2026-04-29 12:10:31,897 | INFO     | all data control threads have been joined
[2026-04-29 08:11:29] 2026-04-29 12:10:32,302 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-29 08:11:29] 2026-04-29 12:10:32,303 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-29 08:11:29] 2026-04-29 12:10:32,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 08:11:29] 2026-04-29 12:10:32,303 | INFO     | will abort loop
[2026-04-29 08:11:29] 2026-04-29 12:10:32,397 | INFO     | all job control threads have been joined
[2026-04-29 08:11:29] 2026-04-29 12:10:32,856 | INFO     | [job] retrieve thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:32,867 | INFO     | [data] copytool_in thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:32,900 | INFO     | [payload] validate_post thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:32,917 | INFO     | [data] control thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:32,931 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:32,948 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:32,955 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:33,143 | INFO     | all payload control threads have been joined
[2026-04-29 08:11:29] 2026-04-29 12:10:33,309 | INFO     | [job] job monitor thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:33,403 | INFO     | [job] control thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:33,455 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:33,634 | INFO     | [job] validate thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:33,860 | INFO     | [data] copytool_out thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:33,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 08:11:29] 2026-04-29 12:10:34,086 | INFO     | [payload] failed_post thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:34,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 08:11:29] 2026-04-29 12:10:34,149 | INFO     | [payload] control thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:35,110 | INFO     | [job] queue monitor thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:10:37,911 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 08:11:29] 2026-04-29 12:11:02,152 | INFO     | PID=3514592 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 08:11:29] 2026-04-29 12:11:02,152 | INFO     | .. there are 9 such processes running
[2026-04-29 08:11:29] 2026-04-29 12:11:02,154 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 08:11:29] 2026-04-29 12:11:02,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 08:11:29] 2026-04-29 12:11:02,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 08:11:29] 2026-04-29 12:11:21,778 | INFO     | [monitor] cgroup control has ended
[2026-04-29 08:11:29] 2026-04-29 12:11:22,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140062906488640)>', '<ExcThread(monitor, started 140062557722368)>']
[2026-04-29 08:11:29] 2026-04-29 12:11:23,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 08:11:29] 2026-04-29 12:11:23,313 | INFO     | [monitor] control thread has ended
[2026-04-29 08:11:29] 2026-04-29 12:11:27,590 | INFO     | all workflow threads have been joined
[2026-04-29 08:11:29] 2026-04-29 12:11:27,591 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 08:11:29] 2026-04-29 12:11:27,591 | INFO     | traces error code: 0
[2026-04-29 08:11:29] 2026-04-29 12:11:27,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 08:11:29] 2026-04-29 12:11:28,795 [wrapper] ==== pilot stdout END ====
[2026-04-29 08:11:29] 2026-04-29 12:11:28,843 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 08:11:29] 2026-04-29 12:11:28,892 [wrapper] pilotpid: 3514592
[2026-04-29 08:11:29] 2026-04-29 12:11:28,962 [wrapper] Pilot exit status: 0
[2026-04-29 08:11:29] 2026-04-29 12:11:29,084 [wrapper] pandaids: 7118212083
[2026-04-29 08:11:29] 2026-04-29 12:11:29,209 [wrapper] cleanup supervisor_pilot  133604 3514593
[2026-04-29 08:11:29] 2026-04-29 12:11:29,212 [wrapper] Test setup, not cleaning
[2026-04-29 08:11:29] 2026-04-29 12:11:29,216 [wrapper] apfmon messages muted
[2026-04-29 08:11:29] 2026-04-29 12:11:29,219 [wrapper] ==== wrapper stdout END ====
[2026-04-29 08:11:29] 2026-04-29 12:11:29,222 [wrapper] ==== wrapper stderr END ====
[2026-04-29 08:11:29]  *** Error codes and diagnostics ***
[2026-04-29 08:11:29]     "exeErrorCode": 0,
[2026-04-29 08:11:29]     "pilotErrorCode": 0,
[2026-04-29 08:11:29]  *** Listing of results directory ***
[2026-04-29 08:11:29] total 475424
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas    683926 Apr 28 21:30 pilot3.tar.gz
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas      5631 Apr 28 21:45 queuedata.json
[2026-04-29 08:11:29] -rwx------. 1 boincer umatlas     36322 Apr 28 21:45 runpilot2-wrapper.sh
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas       100 Apr 29 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 08:11:29] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 29 00:04 run_atlas
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas       105 Apr 29 00:04 job.xml
[2026-04-29 08:11:29] -rw-r--r--. 2 boincer umatlas 259962898 Apr 29 00:04 EVNT.49863848._000096.pool.root.1
[2026-04-29 08:11:29] -rw-r--r--. 2 boincer umatlas     15667 Apr 29 00:04 start_atlas.sh
[2026-04-29 08:11:29] drwxrwx--x. 2 boincer umatlas      4096 Apr 29 00:04 shared
[2026-04-29 08:11:29] -rw-r--r--. 2 boincer umatlas    697430 Apr 29 00:04 input.tar.gz
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas         0 Apr 29 00:04 boinc_lockfile
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas      2646 Apr 29 00:04 pandaJob.out
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas        57 Apr 29 00:04 setup.sh.local
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas   1001122 Apr 29 00:05 agis_schedconf.cvmfs.json
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas       442 Apr 29 00:06 workernode_map.json
[2026-04-29 08:11:29] drwx------. 5 boincer umatlas      4096 Apr 29 00:06 pilot3
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas      6760 Apr 29 08:04 init_data.xml
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas 216906256 Apr 29 08:09 HITS.49863851._002388.pool.root.1
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas       488 Apr 29 08:09 boinc_task_state.xml
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas      1044 Apr 29 08:10 memory_monitor_summary.json
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas   1512704 Apr 29 08:10 agis_ddmendpoints.agis.ALL.json
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas    560721 Apr 29 08:10 log.49863851._002388.job.log.tgz.1
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas      6411 Apr 29 08:10 heartbeat_new.json
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas      6302 Apr 29 08:10 heartbeat.json
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas        95 Apr 29 08:11 pilot_heartbeat.json
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas      5008 Apr 29 08:11 pilotlog.txt
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas      8192 Apr 29 08:11 boinc_mmap_file
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas        28 Apr 29 08:11 wrapper_checkpoint.txt
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas   2353176 Apr 29 08:11 log.49863851._002388.job.log.1
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas       357 Apr 29 08:11 output.list
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas       410 Apr 29 08:11 runtime_log
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas   2928640 Apr 29 08:11 result.tar.gz
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas      8977 Apr 29 08:11 runtime_log.err
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas       659 Apr 29 08:11 62cdb4c99ca2.diag
[2026-04-29 08:11:29] -rw-r--r--. 1 boincer umatlas     21308 Apr 29 08:11 stderr.txt
[2026-04-29 08:11:29] HITS file was successfully produced:
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas 216906256 Apr 29 08:09 shared/HITS.pool.root.1
[2026-04-29 08:11:29]  *** Contents of shared directory: ***
[2026-04-29 08:11:29] total 469260
[2026-04-29 08:11:29] -rw-r--r--. 2 boincer umatlas 259962898 Apr 29 00:04 ATLAS.root_0
[2026-04-29 08:11:29] -rw-r--r--. 2 boincer umatlas     15667 Apr 29 00:04 start_atlas.sh
[2026-04-29 08:11:29] -rw-r--r--. 2 boincer umatlas    697430 Apr 29 00:04 input.tar.gz
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas 216906256 Apr 29 08:09 HITS.pool.root.1
[2026-04-29 08:11:29] -rw-------. 1 boincer umatlas   2928640 Apr 29 08:11 result.tar.gz
08:11:31 (3509009): run_atlas exited; CPU time 61895.422484
08:11:31 (3509009): called boinc_finish(0)

</stderr_txt>
]]>

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