Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
08:09:20 (3502663): wrapper (7.7.26015): starting
08:09:20 (3502663): wrapper: running run_atlas (--nthreads 12)
[2026-04-29 08:09:20] Arguments: --nthreads 12
[2026-04-29 08:09:20] Threads: 12
[2026-04-29 08:09:20] Checking for CVMFS
[2026-04-29 08:09:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 08:09:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 08:09:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 08:09:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 08:09:20] 2.13.3.0 3927126 3888 49772 158996 0 1 3532040 4096001 0 130560 0 2366717 99.718 792442 3208 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-04-29 08:09:20] CVMFS is ok
[2026-04-29 08:09:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 08:09:20] Checking for apptainer binary...
[2026-04-29 08:09:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 08:09:20] Running /usr/bin/apptainer --version
[2026-04-29 08:09:20] apptainer version 1.5.0-rc.2
[2026-04-29 08:09:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 08:09:21] NLDW4-3-13-13
[2026-04-29 08:09:21] apptainer works
[2026-04-29 08:09:21] Set ATHENA_PROC_NUMBER=12
[2026-04-29 08:09:21] Set ATHENA_CORE_NUMBER=12
[2026-04-29 08:09:21] Starting ATLAS job with PandaID=7118210746
[2026-04-29 08:09:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 10:09:11]  *** The last 200 lines of the pilot log: ***
[2026-04-29 10:09:11] 2026-04-29 08:08:21,217 | INFO     | sum of deviations: 23700266133.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,217 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,218 | INFO     | mean y: 2709728.603448276
[2026-04-29 10:09:11] 2026-04-29 08:08:21,218 | INFO     | intersect: 2709728.603448276
[2026-04-29 10:09:11] 2026-04-29 08:08:21,218 | INFO     | chi2: 1.5470056932709353
[2026-04-29 10:09:11] 2026-04-29 08:08:21,218 | INFO     | sum of square deviations: 424045160.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,219 | INFO     | sum of deviations: 22737246506.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,219 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,219 | INFO     | mean y: 2707276.4054054054
[2026-04-29 10:09:11] 2026-04-29 08:08:21,220 | INFO     | intersect: 2707276.4054054054
[2026-04-29 10:09:11] 2026-04-29 08:08:21,220 | INFO     | chi2: 1.5467231933386354
[2026-04-29 10:09:11] 2026-04-29 08:08:21,220 | INFO     | current chi2=1.5467231933386354 (change=0.018261079033431837 %)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,220 | INFO     | right removable region: 110
[2026-04-29 10:09:11] 2026-04-29 08:08:21,220 | INFO     | sum of square deviations: 424045160.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,221 | INFO     | sum of deviations: 3693394083.9999995
[2026-04-29 10:09:11] 2026-04-29 08:08:21,221 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,221 | INFO     | mean y: 2759771.6846846845
[2026-04-29 10:09:11] 2026-04-29 08:08:21,221 | INFO     | intersect: 2759771.6846846845
[2026-04-29 10:09:11] 2026-04-29 08:08:21,222 | INFO     | chi2: 0.08437956448451267
[2026-04-29 10:09:11] 2026-04-29 08:08:21,222 | INFO     | current chi2=0.08437956448451267 (change=94.54562030045905 %)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,222 | INFO     | sum of square deviations: 369281342.5
[2026-04-29 10:09:11] 2026-04-29 08:08:21,223 | INFO     | sum of deviations: -855009580.5000001
[2026-04-29 10:09:11] 2026-04-29 08:08:21,223 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,223 | INFO     | mean y: 2772201.0849056602
[2026-04-29 10:09:11] 2026-04-29 08:08:21,223 | INFO     | intersect: 2772201.0849056602
[2026-04-29 10:09:11] 2026-04-29 08:08:21,224 | INFO     | chi2: 0.00457056670755424
[2026-04-29 10:09:11] 2026-04-29 08:08:21,224 | INFO     | current chi2=0.00457056670755424 (change=94.58332507938799 %)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,224 | INFO     | sum of square deviations: 319447850.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,225 | INFO     | sum of deviations: -1497593127.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,225 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,225 | INFO     | mean y: 2774148.1782178218
[2026-04-29 10:09:11] 2026-04-29 08:08:21,225 | INFO     | intersect: 2774148.1782178218
[2026-04-29 10:09:11] 2026-04-29 08:08:21,225 | INFO     | chi2: 0.002687202913618485
[2026-04-29 10:09:11] 2026-04-29 08:08:21,225 | INFO     | current chi2=0.002687202913618485 (change=41.206351738022505 %)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,226 | INFO     | sum of square deviations: 274312120.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,226 | INFO     | sum of deviations: -1662976205.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,226 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,226 | INFO     | mean y: 2774700.875
[2026-04-29 10:09:11] 2026-04-29 08:08:21,226 | INFO     | intersect: 2774700.875
[2026-04-29 10:09:11] 2026-04-29 08:08:21,227 | INFO     | chi2: 0.0021979824967581275
[2026-04-29 10:09:11] 2026-04-29 08:08:21,227 | INFO     | current chi2=0.0021979824967581275 (change=18.20556290636021 %)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,227 | INFO     | left removable region: 20
[2026-04-29 10:09:11] 2026-04-29 08:08:21,228 | INFO     | sum of square deviations: 226022842.5
[2026-04-29 10:09:11] 2026-04-29 08:08:21,228 | INFO     | sum of deviations: -1477970280.9999998
[2026-04-29 10:09:11] 2026-04-29 08:08:21,228 | INFO     | mean x (centered): 0.0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,228 | INFO     | mean y: 2775402.9111111113
[2026-04-29 10:09:11] 2026-04-29 08:08:21,228 | INFO     | intersect: 2775402.9111111113
[2026-04-29 10:09:11] 2026-04-29 08:08:21,229 | INFO     | chi2: 0.002159791716492921
[2026-04-29 10:09:11] 2026-04-29 08:08:21,229 | INFO     | current memory leak: -6.54 B/s (using 90 data points, chi2=0.00)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,231 | INFO     | could have reported an average CPU frequency of 2294 MHz (7 samples)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,231 | INFO     | ..............................
[2026-04-29 10:09:11] 2026-04-29 08:08:21,231 | INFO     | . Timing measurements:
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . get job = 0 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . initial setup = 11 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . payload setup = 19 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . stage-in = 0 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . payload execution = 7077 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . stage-out = 1 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | . log creation = 0 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,232 | INFO     | ..............................
[2026-04-29 10:09:11] 2026-04-29 08:08:21,487 | WARNING  | process 3515170 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 10:09:11] 2026-04-29 08:08:21,487 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-7118210746/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,510 | INFO     | 
[2026-04-29 10:09:11] 2026-04-29 08:08:21,512 | INFO     | job summary report
[2026-04-29 10:09:11] 2026-04-29 08:08:21,512 | INFO     | --------------------------------------------------
[2026-04-29 10:09:11] 2026-04-29 08:08:21,512 | INFO     | PanDA job id: 7118210746
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | task id: 49863714
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | errors: (none)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | pilot state: finished 
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | transexitcode: 0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | exeerrorcode: 0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,513 | INFO     | exeerrordiag: 
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | exitcode: 0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | exitmsg: OK
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | cpuconsumptiontime: 77220 s
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | nevents: 400
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | neventsw: 0
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | pid: 3515170
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | pgrp: 3515170
[2026-04-29 10:09:11] 2026-04-29 08:08:21,514 | INFO     | corecount: 12
[2026-04-29 10:09:11] 2026-04-29 08:08:21,515 | INFO     | event service: False
[2026-04-29 10:09:11] 2026-04-29 08:08:21,515 | INFO     | sizes: {0: 2280669, 1: 2282441, 7101: 2309722, 7102: 2309721, 7103: 2318833, 7106: 2318971}
[2026-04-29 10:09:11] 2026-04-29 08:08:21,515 | INFO     | --------------------------------------------------
[2026-04-29 10:09:11] 2026-04-29 08:08:21,515 | INFO     | 
[2026-04-29 10:09:11] 2026-04-29 08:08:21,516 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2026-04-29 10:09:11] 2026-04-29 08:08:21,558 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,559 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,559 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,559 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,559 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,559 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,561 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,562 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 10:09:11] 2026-04-29 08:08:21,562 | INFO     | job 7118210746 has completed (purged errors)
[2026-04-29 10:09:11] 2026-04-29 08:08:21,562 | INFO     | overall cleanup function is called
[2026-04-29 10:09:11] 2026-04-29 08:08:21,659 | INFO     | number of running child processes to parent process 3515170: 1
[2026-04-29 10:09:11] 2026-04-29 08:08:21,660 | INFO     | maximum number of monitored processes: 6
[2026-04-29 10:09:11] 2026-04-29 08:08:21,660 | INFO     | aborting job monitoring since job object (job id=7118210746) has expired
[2026-04-29 10:09:11] 2026-04-29 08:08:22,575 | INFO     | --- collectZombieJob: --- 10, [3515170]
[2026-04-29 10:09:11] 2026-04-29 08:08:22,579 | INFO     | zombie collector waiting for pid 3515170
[2026-04-29 10:09:11] 2026-04-29 08:08:22,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 10:09:11] 2026-04-29 08:08:22,580 | INFO     | collected zombie processes
[2026-04-29 10:09:11] 2026-04-29 08:08:22,580 | INFO     | will attempt to kill all subprocesses of pid=3515170
[2026-04-29 10:09:11] 2026-04-29 08:08:22,720 | INFO     | process IDs to be killed: [3515170] (in reverse order)
[2026-04-29 10:09:11] 2026-04-29 08:08:22,793 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 10:09:11] 2026-04-29 08:08:22,794 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 10:09:11] 2026-04-29 08:08:22,802 | INFO     | did not find any defunct processes belonging to 3515170
[2026-04-29 10:09:11] 2026-04-29 08:08:22,811 | INFO     | did not find any defunct processes belonging to 3515170
[2026-04-29 10:09:11] 2026-04-29 08:08:22,812 | INFO     | Ready for new job
[2026-04-29 10:09:11] 2026-04-29 08:08:22,816 | INFO     | ***************************************
[2026-04-29 10:09:11] 2026-04-29 08:08:22,816 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 10:09:11] 2026-04-29 08:08:22,817 | INFO     | ***************************************
[2026-04-29 10:09:11] 2026-04-29 08:08:22,817 | INFO     | 
[2026-04-29 10:09:11] 2026-04-29 08:08:22,820 | INFO     | architecture information:
[2026-04-29 10:09:11] 2026-04-29 08:08:22,821 | INFO     | executing command: cat /etc/os-release
[2026-04-29 10:09:11] 2026-04-29 08:08:22,857 | INFO     | cat /etc/os-release:
[2026-04-29 10:09:11] NAME="CentOS Linux"
[2026-04-29 10:09:11] VERSION="7 (Core)"
[2026-04-29 10:09:11] ID="centos"
[2026-04-29 10:09:11] ID_LIKE="rhel fedora"
[2026-04-29 10:09:11] VERSION_ID="7"
[2026-04-29 10:09:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 10:09:11] ANSI_COLOR="0;31"
[2026-04-29 10:09:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 10:09:11] HOME_URL="https://www.centos.org/"
[2026-04-29 10:09:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 10:09:11] 
[2026-04-29 10:09:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 10:09:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 10:09:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 10:09:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 10:09:11] 
[2026-04-29 10:09:11] 2026-04-29 08:08:22,858 | INFO     | ***************************************
[2026-04-29 10:09:11] 2026-04-29 08:08:23,360 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2026-04-29 10:09:11] 2026-04-29 08:08:23,406 | INFO     | sufficient remaining disk space (872455077888 B)
[2026-04-29 10:09:11] 2026-04-29 08:08:23,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 10:09:11] 2026-04-29 08:08:23,407 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 10:09:11] 2026-04-29 08:08:23,408 | INFO     | update_server=False
[2026-04-29 10:09:11] 2026-04-29 08:08:23,408 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 10:09:11] 2026-04-29 08:08:23,411 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 10:09:11] 2026-04-29 08:08:23,412 | INFO     | aborting loop
[2026-04-29 10:09:11] 2026-04-29 08:08:23,718 | INFO     | all payload control threads have been joined
[2026-04-29 10:09:11] 2026-04-29 08:08:23,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 10:09:11] 2026-04-29 08:08:24,212 | INFO     | all data control threads have been joined
[2026-04-29 10:09:11] 2026-04-29 08:08:24,415 | INFO     | [job] job monitor thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:24,417 | INFO     | [job] retrieve thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:24,542 | INFO     | all job control threads have been joined
[2026-04-29 10:09:11] 2026-04-29 08:08:24,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 10:09:11] 2026-04-29 08:08:24,724 | INFO     | [payload] control thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:24,921 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,083 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,116 | INFO     | [data] copytool_in thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,218 | INFO     | [data] control thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,262 | INFO     | [payload] failed_post thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,547 | INFO     | [job] control thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,781 | INFO     | [job] validate thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,879 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,993 | INFO     | [payload] validate_post thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:25,993 | INFO     | [data] copytool_out thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:26,395 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 10:09:11] 2026-04-29 08:08:27,399 | INFO     | [job] queue monitor thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:28,586 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:33,755 | INFO     | job.realtimelogging is not enabled
[2026-04-29 10:09:11] 2026-04-29 08:08:34,759 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 10:09:11] 2026-04-29 08:08:54,274 | INFO     | PID=3507791 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 10:09:11] 2026-04-29 08:08:54,275 | INFO     | .. there are 2 such processes running
[2026-04-29 10:09:11] 2026-04-29 08:08:54,276 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 10:09:11] 2026-04-29 08:08:54,277 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 10:09:11] 2026-04-29 08:08:54,277 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 10:09:11] 2026-04-29 08:09:05,015 | INFO     | [monitor] cgroup control has ended
[2026-04-29 10:09:11] 2026-04-29 08:09:05,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704337721152)>', '<ExcThread(monitor, started 140703841634048)>']
[2026-04-29 10:09:11] 2026-04-29 08:09:06,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 10:09:11] 2026-04-29 08:09:06,337 | INFO     | [monitor] control thread has ended
[2026-04-29 10:09:11] 2026-04-29 08:09:10,971 | INFO     | all workflow threads have been joined
[2026-04-29 10:09:11] 2026-04-29 08:09:10,972 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 10:09:11] 2026-04-29 08:09:10,972 | INFO     | traces error code: 0
[2026-04-29 10:09:11] 2026-04-29 08:09:10,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 10:09:11] 2026-04-29 08:09:11,392 [wrapper] ==== pilot stdout END ====
[2026-04-29 10:09:11] 2026-04-29 08:09:11,397 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 10:09:11] 2026-04-29 08:09:11,404 [wrapper] pilotpid: 3507791
[2026-04-29 10:09:11] 2026-04-29 08:09:11,409 [wrapper] Pilot exit status: 0
[2026-04-29 10:09:11] 2026-04-29 08:09:11,427 [wrapper] pandaids: 7118210746
[2026-04-29 10:09:11] 2026-04-29 08:09:11,499 [wrapper] cleanup supervisor_pilot 3957357 3507792
[2026-04-29 10:09:11] 2026-04-29 08:09:11,506 [wrapper] Test setup, not cleaning
[2026-04-29 10:09:11] 2026-04-29 08:09:11,512 [wrapper] apfmon messages muted
[2026-04-29 10:09:11] 2026-04-29 08:09:11,518 [wrapper] ==== wrapper stdout END ====
[2026-04-29 10:09:11] 2026-04-29 08:09:11,524 [wrapper] ==== wrapper stderr END ====
[2026-04-29 10:09:11]  *** Error codes and diagnostics ***
[2026-04-29 10:09:11]     "exeErrorCode": 0,
[2026-04-29 10:09:11]     "pilotErrorCode": 0,
[2026-04-29 10:09:11]  *** Listing of results directory ***
[2026-04-29 10:09:11] total 472604
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc    683926 Apr 29 01:40 pilot3.tar.gz
[2026-04-29 10:09:11] -rwx------ 1 boinc boinc     36322 Apr 29 02:01 runpilot2-wrapper.sh
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc      5631 Apr 29 02:01 queuedata.json
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc       100 Apr 29 08:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 10:09:11] -rwxr-xr-x 1 boinc boinc      7986 Apr 29 08:09 run_atlas
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc       105 Apr 29 08:09 job.xml
[2026-04-29 10:09:11] -rw-r--r-- 2 boinc boinc     15667 Apr 29 08:09 start_atlas.sh
[2026-04-29 10:09:11] drwxrwx--x 2 boinc boinc      4096 Apr 29 08:09 shared
[2026-04-29 10:09:11] -rw-r--r-- 2 boinc boinc    697416 Apr 29 08:09 input.tar.gz
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc      6133 Apr 29 08:09 init_data.xml
[2026-04-29 10:09:11] -rw-r--r-- 2 boinc boinc 261231189 Apr 29 08:09 EVNT.49863712._000104.pool.root.1
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc         0 Apr 29 08:09 boinc_setup_complete
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc         0 Apr 29 08:09 boinc_lockfile
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc      2574 Apr 29 08:09 pandaJob.out
[2026-04-29 10:09:11] -rw------- 1 boinc boinc   1000759 Apr 29 08:09 agis_schedconf.cvmfs.json
[2026-04-29 10:09:11] -rw------- 1 boinc boinc   1512704 Apr 29 08:09 agis_ddmendpoints.agis.ALL.json
[2026-04-29 10:09:11] -rw------- 1 boinc boinc       435 Apr 29 08:09 workernode_map.json
[2026-04-29 10:09:11] drwx------ 5 boinc boinc      4096 Apr 29 08:09 pilot3
[2026-04-29 10:09:11] -rw------- 1 boinc boinc 216397578 Apr 29 10:07 HITS.49863714._005055.pool.root.1
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc       487 Apr 29 10:07 boinc_task_state.xml
[2026-04-29 10:09:11] -rw------- 1 boinc boinc      1035 Apr 29 10:08 memory_monitor_summary.json
[2026-04-29 10:09:11] -rw------- 1 boinc boinc    397097 Apr 29 10:08 log.49863714._005055.job.log.tgz.1
[2026-04-29 10:09:11] -rw------- 1 boinc boinc      6369 Apr 29 10:08 heartbeat_new.json
[2026-04-29 10:09:11] -rw------- 1 boinc boinc      6260 Apr 29 10:08 heartbeat.json
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc        27 Apr 29 10:08 wrapper_checkpoint.txt
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc      8192 Apr 29 10:08 boinc_mmap_file
[2026-04-29 10:09:11] -rw------- 1 boinc boinc        95 Apr 29 10:08 pilot_heartbeat.json
[2026-04-29 10:09:11] -rw------- 1 boinc boinc      4896 Apr 29 10:09 pilotlog.txt
[2026-04-29 10:09:11] -rw------- 1 boinc boinc    690474 Apr 29 10:09 log.49863714._005055.job.log.1
[2026-04-29 10:09:11] -rw------- 1 boinc boinc       357 Apr 29 10:09 output.list
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc       410 Apr 29 10:09 runtime_log
[2026-04-29 10:09:11] -rw------- 1 boinc boinc   1105920 Apr 29 10:09 result.tar.gz
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc      8459 Apr 29 10:09 runtime_log.err
[2026-04-29 10:09:11] -rw------- 1 boinc boinc       658 Apr 29 10:09 4a4fac3ffad1.diag
[2026-04-29 10:09:11] -rw-r--r-- 1 boinc boinc     20622 Apr 29 10:09 stderr.txt
[2026-04-29 10:09:11] HITS file was successfully produced:
[2026-04-29 10:09:11] -rw------- 1 boinc boinc 216397578 Apr 29 10:07 shared/HITS.pool.root.1
[2026-04-29 10:09:11]  *** Contents of shared directory: ***
[2026-04-29 10:09:11] total 468228
[2026-04-29 10:09:11] -rw-r--r-- 2 boinc boinc     15667 Apr 29 08:09 start_atlas.sh
[2026-04-29 10:09:11] -rw-r--r-- 2 boinc boinc    697416 Apr 29 08:09 input.tar.gz
[2026-04-29 10:09:11] -rw-r--r-- 2 boinc boinc 261231189 Apr 29 08:09 ATLAS.root_0
[2026-04-29 10:09:11] -rw------- 1 boinc boinc 216397578 Apr 29 10:07 HITS.pool.root.1
[2026-04-29 10:09:11] -rw------- 1 boinc boinc   1105920 Apr 29 10:09 result.tar.gz
10:09:13 (3502663): run_atlas exited; CPU time 77320.060873
10:09:13 (3502663): called boinc_finish(0)

</stderr_txt>
]]>

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