Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:00:13 (22597): wrapper (7.7.26015): starting
09:00:13 (22597): wrapper: running run_atlas (--nthreads 8)
[2026-04-29 09:00:13] Arguments: --nthreads 8
[2026-04-29 09:00:13] Threads: 8
[2026-04-29 09:00:13] Checking for CVMFS
[2026-04-29 09:00:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 09:00:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 09:00:14] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 09:00:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 09:00:14] 2.11.2.0 24555 19556 104152 158997 0 104 19437052 25165825 314 130560 0 40216803 99.952 8601178 7757 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-29 09:00:14] CVMFS is ok
[2026-04-29 09:00:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 09:00:14] Checking for apptainer binary...
[2026-04-29 09:00:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 09:00:14] Running /usr/bin/apptainer --version
[2026-04-29 09:00:14] apptainer version 1.3.2-1.el7
[2026-04-29 09:00:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 09:00:16] cg-vwn357.simple-grid.lan
[2026-04-29 09:00:16] apptainer works
[2026-04-29 09:00:16] Set ATHENA_PROC_NUMBER=8
[2026-04-29 09:00:16] Set ATHENA_CORE_NUMBER=8
[2026-04-29 09:00:16] Starting ATLAS job with PandaID=7118190755
[2026-04-29 09:00:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 13:44:24]  *** The last 200 lines of the pilot log: ***
[2026-04-29 13:44:24] 2026-04-29 11:43:13,406 | INFO     | this job has now completed (state=finished)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,407 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,407 | INFO     | log transfer has been attempted: DONE
[2026-04-29 13:44:24] 2026-04-29 11:43:13,407 | INFO     | job 7118190755 has finished - writing final server update
[2026-04-29 13:44:24] 2026-04-29 11:43:13,407 | INFO     | total number of processed events: 400 (read)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,409 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-7118190755/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,410 | INFO     | extracted standard info from prmon json
[2026-04-29 13:44:24] 2026-04-29 11:43:13,410 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 13:44:24] 2026-04-29 11:43:13,411 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 13:44:24] 2026-04-29 11:43:13,411 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 13:44:24] 2026-04-29 11:43:13,425 | INFO     | fitting pss+swap vs Time
[2026-04-29 13:44:24] 2026-04-29 11:43:13,426 | INFO     | sum of square deviations: 6662039329.5
[2026-04-29 13:44:24] 2026-04-29 11:43:13,429 | INFO     | sum of deviations: 7208297410.0000305
[2026-04-29 13:44:24] 2026-04-29 11:43:13,429 | INFO     | mean x (centered): 0.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,429 | INFO     | mean y: 2525136.035971223
[2026-04-29 13:44:24] 2026-04-29 11:43:13,429 | INFO     | intersect: 2525136.035971223
[2026-04-29 13:44:24] 2026-04-29 11:43:13,430 | INFO     | chi2: 3.227735352547964
[2026-04-29 13:44:24] 2026-04-29 11:43:13,430 | INFO     | sum of square deviations: 6309000152.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,433 | INFO     | sum of deviations: 45176646421.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,433 | INFO     | mean x (centered): 0.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,433 | INFO     | mean y: 2541356.5567765567
[2026-04-29 13:44:24] 2026-04-29 11:43:13,433 | INFO     | intersect: 2541356.5567765567
[2026-04-29 13:44:24] 2026-04-29 11:43:13,434 | INFO     | chi2: 1.5863213055785852
[2026-04-29 13:44:24] 2026-04-29 11:43:13,434 | INFO     | current chi2=1.5863213055785852 (change=50.853427176848676 %)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,435 | INFO     | sum of square deviations: 5968658887.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,437 | INFO     | sum of deviations: 44077784399.50001
[2026-04-29 13:44:24] 2026-04-29 11:43:13,437 | INFO     | mean x (centered): 0.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,437 | INFO     | mean y: 2540864.5410447763
[2026-04-29 13:44:24] 2026-04-29 11:43:13,438 | INFO     | intersect: 2540864.5410447763
[2026-04-29 13:44:24] 2026-04-29 11:43:13,438 | INFO     | chi2: 1.5869289683402332
[2026-04-29 13:44:24] 2026-04-29 11:43:13,438 | INFO     | current chi2=1.5869289683402332 (change=-0.03830641116090892 %)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,438 | INFO     | right removable region: 267
[2026-04-29 13:44:24] 2026-04-29 11:43:13,439 | INFO     | sum of square deviations: 6309000152.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,448 | INFO     | sum of deviations: -37802953428.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,448 | INFO     | mean x (centered): 0.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,448 | INFO     | mean y: 2544426.9926739926
[2026-04-29 13:44:24] 2026-04-29 11:43:13,448 | INFO     | intersect: 2544426.9926739926
[2026-04-29 13:44:24] 2026-04-29 11:43:13,449 | INFO     | chi2: 1.7367498559726853
[2026-04-29 13:44:24] 2026-04-29 11:43:13,449 | INFO     | current chi2=1.7367498559726853 (change=46.19292890286992 %)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,449 | INFO     | sum of square deviations: 5968658887.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,452 | INFO     | sum of deviations: -39984950390.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,452 | INFO     | mean x (centered): 0.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,452 | INFO     | mean y: 2545387.6417910447
[2026-04-29 13:44:24] 2026-04-29 11:43:13,453 | INFO     | intersect: 2545387.6417910447
[2026-04-29 13:44:24] 2026-04-29 11:43:13,453 | INFO     | chi2: 1.7221131925951327
[2026-04-29 13:44:24] 2026-04-29 11:43:13,453 | INFO     | current chi2=1.7221131925951327 (change=0.842761744140472 %)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,453 | INFO     | left removable region: 10
[2026-04-29 13:44:24] 2026-04-29 11:43:13,454 | INFO     | sum of square deviations: 5263458688.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,456 | INFO     | sum of deviations: -2802978548.000001
[2026-04-29 13:44:24] 2026-04-29 11:43:13,456 | INFO     | mean x (centered): 0.0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,457 | INFO     | mean y: 2562482.4241245138
[2026-04-29 13:44:24] 2026-04-29 11:43:13,457 | INFO     | intersect: 2562482.4241245138
[2026-04-29 13:44:24] 2026-04-29 11:43:13,457 | INFO     | chi2: 0.04621094139214862
[2026-04-29 13:44:24] 2026-04-29 11:43:13,458 | INFO     | current memory leak: -0.53 B/s (using 257 data points, chi2=0.05)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,458 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,458 | INFO     | ..............................
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . Timing measurements:
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . get job = 0 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . initial setup = 7 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . payload setup = 20 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . stage-in = 0 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . payload execution = 16916 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . stage-out = 4 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | . log creation = 1 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,459 | INFO     | ..............................
[2026-04-29 13:44:24] 2026-04-29 11:43:13,588 | INFO     | 
[2026-04-29 13:44:24] 2026-04-29 11:43:13,588 | INFO     | job summary report
[2026-04-29 13:44:24] 2026-04-29 11:43:13,588 | INFO     | --------------------------------------------------
[2026-04-29 13:44:24] 2026-04-29 11:43:13,588 | INFO     | PanDA job id: 7118190755
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | task id: 49820244
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | errors: (none)
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | pilot state: finished 
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | transexitcode: 0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | exeerrorcode: 0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | exeerrordiag: 
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | exitcode: 0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,589 | INFO     | exitmsg: OK
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | cpuconsumptiontime: 102647 s
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | nevents: 400
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | neventsw: 0
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | pid: 31094
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | pgrp: 31094
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | corecount: 8
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | event service: False
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | sizes: {0: 2280677, 1: 2282506, 16940: 2314530, 16941: 2314529, 16946: 2323585, 16947: 2323963}
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | --------------------------------------------------
[2026-04-29 13:44:24] 2026-04-29 11:43:13,590 | INFO     | 
[2026-04-29 13:44:24] 2026-04-29 11:43:13,591 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2026-04-29 13:44:24] 2026-04-29 11:43:14,207 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,207 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,207 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,207 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,209 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 13:44:24] 2026-04-29 11:43:14,210 | INFO     | job 7118190755 has completed (purged errors)
[2026-04-29 13:44:24] 2026-04-29 11:43:14,210 | INFO     | overall cleanup function is called
[2026-04-29 13:44:24] 2026-04-29 11:43:15,219 | INFO     | --- collectZombieJob: --- 10, [31094]
[2026-04-29 13:44:24] 2026-04-29 11:43:15,220 | INFO     | zombie collector waiting for pid 31094
[2026-04-29 13:44:24] 2026-04-29 11:43:15,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 13:44:24] 2026-04-29 11:43:15,220 | INFO     | collected zombie processes
[2026-04-29 13:44:24] 2026-04-29 11:43:15,220 | INFO     | will attempt to kill all subprocesses of pid=31094
[2026-04-29 13:44:24] 2026-04-29 11:43:15,286 | INFO     | process IDs to be killed: [31094] (in reverse order)
[2026-04-29 13:44:24] 2026-04-29 11:43:16,027 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 13:44:24] 2026-04-29 11:43:16,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 13:44:24] 2026-04-29 11:43:16,030 | INFO     | did not find any defunct processes belonging to 31094
[2026-04-29 13:44:24] 2026-04-29 11:43:16,031 | INFO     | did not find any defunct processes belonging to 31094
[2026-04-29 13:44:24] 2026-04-29 11:43:16,031 | INFO     | Ready for new job
[2026-04-29 13:44:24] 2026-04-29 11:43:16,033 | INFO     | ***************************************
[2026-04-29 13:44:24] 2026-04-29 11:43:16,034 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 13:44:24] 2026-04-29 11:43:16,034 | INFO     | ***************************************
[2026-04-29 13:44:24] 2026-04-29 11:43:16,034 | INFO     | 
[2026-04-29 13:44:24] 2026-04-29 11:43:16,034 | INFO     | pilot is running in a VM
[2026-04-29 13:44:24] 2026-04-29 11:43:16,035 | INFO     | architecture information:
[2026-04-29 13:44:24] 2026-04-29 11:43:16,050 | INFO     | executing command: cat /etc/os-release
[2026-04-29 13:44:24] 2026-04-29 11:43:16,363 | INFO     | cat /etc/os-release:
[2026-04-29 13:44:24] NAME="CentOS Linux"
[2026-04-29 13:44:24] VERSION="7 (Core)"
[2026-04-29 13:44:24] ID="centos"
[2026-04-29 13:44:24] ID_LIKE="rhel fedora"
[2026-04-29 13:44:24] VERSION_ID="7"
[2026-04-29 13:44:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 13:44:24] ANSI_COLOR="0;31"
[2026-04-29 13:44:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 13:44:24] HOME_URL="https://www.centos.org/"
[2026-04-29 13:44:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 13:44:24] 
[2026-04-29 13:44:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 13:44:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 13:44:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 13:44:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 13:44:24] 
[2026-04-29 13:44:24] 2026-04-29 11:43:16,363 | INFO     | ***************************************
[2026-04-29 13:44:24] 2026-04-29 11:43:16,867 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2026-04-29 13:44:24] 2026-04-29 11:43:17,089 | INFO     | sufficient remaining disk space (493196673024 B)
[2026-04-29 13:44:24] 2026-04-29 11:43:17,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 13:44:24] 2026-04-29 11:43:17,090 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 13:44:24] 2026-04-29 11:43:17,090 | INFO     | update_server=False
[2026-04-29 13:44:24] 2026-04-29 11:43:17,090 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 13:44:24] 2026-04-29 11:43:17,090 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 13:44:24] 2026-04-29 11:43:17,091 | INFO     | aborting loop
[2026-04-29 13:44:24] 2026-04-29 11:43:17,097 | INFO     | all data control threads have been joined
[2026-04-29 13:44:24] 2026-04-29 11:43:17,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 13:44:24] 2026-04-29 11:43:17,536 | INFO     | all job control threads have been joined
[2026-04-29 13:44:24] 2026-04-29 11:43:18,096 | INFO     | [job] retrieve thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,097 | INFO     | [job] job monitor thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,104 | INFO     | [data] control thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,134 | INFO     | all payload control threads have been joined
[2026-04-29 13:44:24] 2026-04-29 11:43:18,137 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,243 | INFO     | [data] copytool_in thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,254 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,482 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,542 | INFO     | [job] control thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,573 | INFO     | [job] validate thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 13:44:24] 2026-04-29 11:43:18,918 | INFO     | [payload] failed_post thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:18,961 | INFO     | [payload] validate_post thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:19,140 | INFO     | [payload] control thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:19,309 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:19,368 | INFO     | [data] copytool_out thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:19,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 13:44:24] 2026-04-29 11:43:19,608 | INFO     | [job] queue monitor thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:23,424 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 13:44:24] 2026-04-29 11:43:46,895 | INFO     | PID=26663 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-29 13:44:24] 2026-04-29 11:43:46,896 | INFO     | .. there are 2 such processes running
[2026-04-29 13:44:24] 2026-04-29 11:43:46,897 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 13:44:24] 2026-04-29 11:43:46,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 13:44:24] 2026-04-29 11:43:46,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 13:44:24] 2026-04-29 11:44:13,096 | INFO     | [monitor] cgroup control has ended
[2026-04-29 13:44:24] 2026-04-29 11:44:13,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331540023104)>', '<ExcThread(monitor, started 140330624063232)>']
[2026-04-29 13:44:24] 2026-04-29 11:44:14,058 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 13:44:24] 2026-04-29 11:44:14,059 | INFO     | [monitor] control thread has ended
[2026-04-29 13:44:24] 2026-04-29 11:44:18,684 | INFO     | all workflow threads have been joined
[2026-04-29 13:44:24] 2026-04-29 11:44:18,685 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 13:44:24] 2026-04-29 11:44:18,685 | INFO     | traces error code: 0
[2026-04-29 13:44:24] 2026-04-29 11:44:18,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 13:44:24] 2026-04-29 11:44:18,966 [wrapper] ==== pilot stdout END ====
[2026-04-29 13:44:24] 2026-04-29 11:44:18,989 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 13:44:24] 2026-04-29 11:44:19,007 [wrapper] pilotpid: 26663
[2026-04-29 13:44:24] 2026-04-29 11:44:19,072 [wrapper] Pilot exit status: 0
[2026-04-29 13:44:24] 2026-04-29 11:44:19,244 [wrapper] pandaids: 7118190755
[2026-04-29 13:44:24] 2026-04-29 11:44:20,597 [wrapper] cleanup supervisor_pilot 21935 26664
[2026-04-29 13:44:24] 2026-04-29 11:44:20,708 [wrapper] Test setup, not cleaning
[2026-04-29 13:44:24] 2026-04-29 11:44:20,796 [wrapper] apfmon messages muted
[2026-04-29 13:44:24] 2026-04-29 11:44:20,901 [wrapper] ==== wrapper stdout END ====
[2026-04-29 13:44:24] 2026-04-29 11:44:21,031 [wrapper] ==== wrapper stderr END ====
[2026-04-29 13:44:24]  *** Error codes and diagnostics ***
[2026-04-29 13:44:24]     "exeErrorCode": 0,
[2026-04-29 13:44:24]     "pilotErrorCode": 0,
[2026-04-29 13:44:24]  *** Listing of results directory ***
[2026-04-29 13:44:24] total 2453928
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc     683926 Apr 29 01:40 pilot3.tar.gz
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc       5631 Apr 29 01:59 queuedata.json
[2026-04-29 13:44:24] -rwx------. 1 boinc boinc      36322 Apr 29 02:00 runpilot2-wrapper.sh
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc        100 Apr 29 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 13:44:24] -rwxr-xr-x. 1 boinc boinc       7986 Apr 29 09:00 run_atlas
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc        105 Apr 29 09:00 job.xml
[2026-04-29 13:44:24] -rw-r--r--. 2 boinc boinc 2227868872 Apr 29 09:00 EVNT.49820242._000022.pool.root.1
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc       6307 Apr 29 09:00 init_data.xml
[2026-04-29 13:44:24] -rw-r--r--. 2 boinc boinc      15667 Apr 29 09:00 start_atlas.sh
[2026-04-29 13:44:24] drwxrwx--x. 2 boinc boinc         68 Apr 29 09:00 shared
[2026-04-29 13:44:24] -rw-r--r--. 2 boinc boinc     697411 Apr 29 09:00 input.tar.gz
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc          0 Apr 29 09:00 boinc_lockfile
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc       2549 Apr 29 09:00 pandaJob.out
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc    1001452 Apr 29 09:00 agis_schedconf.cvmfs.json
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc        415 Apr 29 09:00 workernode_map.json
[2026-04-29 13:44:24] drwx------. 5 boinc boinc       4096 Apr 29 09:00 pilot3
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc  276498209 Apr 29 13:41 HITS.49820244._026190.pool.root.1
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc        491 Apr 29 13:41 boinc_task_state.xml
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc       1019 Apr 29 13:43 memory_monitor_summary.json
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc    1512704 Apr 29 13:43 agis_ddmendpoints.agis.ALL.json
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc     574242 Apr 29 13:43 log.49820244._026190.job.log.tgz.1
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc       6343 Apr 29 13:43 heartbeat_new.json
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc       6234 Apr 29 13:43 heartbeat.json
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc         95 Apr 29 13:43 pilot_heartbeat.json
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc       8192 Apr 29 13:44 boinc_mmap_file
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc         29 Apr 29 13:44 wrapper_checkpoint.txt
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc       4884 Apr 29 13:44 pilotlog.txt
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc    1585280 Apr 29 13:44 log.49820244._026190.job.log.1
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc        357 Apr 29 13:44 output.list
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc        410 Apr 29 13:44 runtime_log
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc    2181120 Apr 29 13:44 result.tar.gz
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc       8455 Apr 29 13:44 runtime_log.err
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc        656 Apr 29 13:44 4a13b620f87e.diag
[2026-04-29 13:44:24] -rw-r--r--. 1 boinc boinc      20625 Apr 29 13:44 stderr.txt
[2026-04-29 13:44:24] HITS file was successfully produced:
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc 276498209 Apr 29 13:41 shared/HITS.pool.root.1
[2026-04-29 13:44:24]  *** Contents of shared directory: ***
[2026-04-29 13:44:24] total 2448508
[2026-04-29 13:44:24] -rw-r--r--. 2 boinc boinc 2227868872 Apr 29 09:00 ATLAS.root_0
[2026-04-29 13:44:24] -rw-r--r--. 2 boinc boinc      15667 Apr 29 09:00 start_atlas.sh
[2026-04-29 13:44:24] -rw-r--r--. 2 boinc boinc     697411 Apr 29 09:00 input.tar.gz
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc  276498209 Apr 29 13:41 HITS.pool.root.1
[2026-04-29 13:44:24] -rw-------. 1 boinc boinc    2181120 Apr 29 13:44 result.tar.gz
13:44:25 (22597): run_atlas exited; CPU time 102791.250880
13:44:25 (22597): called boinc_finish(0)

</stderr_txt>
]]>

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