Stderr output

<core_client_version>8.2.10</core_client_version>
<![CDATA[
<stderr_txt>
03:23:25 (5534): wrapper (7.7.26015): starting
03:23:25 (5534): wrapper: running run_atlas (--nthreads 8)
[2026-04-29 03:23:25] Arguments: --nthreads 8
[2026-04-29 03:23:25] Threads: 8
[2026-04-29 03:23:25] Checking for CVMFS
[2026-04-29 03:23:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 03:23:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 03:23:25] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 03:23:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 03:23:25] 2.11.0.0 8857 286775 98064 158988 0 173 3569707 4096000 907 130560 4 22302056 99.651 16570580 367 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-29 03:23:25] CVMFS is ok
[2026-04-29 03:23:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 03:23:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 03:23:25] Further information can be found at the LHC@home message board.
[2026-04-29 03:23:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 03:23:25] Checking for apptainer binary...
[2026-04-29 03:23:25] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-29 03:23:25] apptainer is not installed, using version from CVMFS
[2026-04-29 03:23:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 03:23:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_11557247/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node248
[2026-04-29 03:23:26] apptainer works
[2026-04-29 03:23:26] Set ATHENA_PROC_NUMBER=8
[2026-04-29 03:23:26] Set ATHENA_CORE_NUMBER=8
[2026-04-29 03:23:26] Starting ATLAS job with PandaID=7116970048
[2026-04-29 03:23:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11557247/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 04:27:44]  *** The last 200 lines of the pilot log: ***
[2026-04-29 04:27:44]  filetype=log
[2026-04-29 04:27:44]  guid=16ad8c67-0790-486e-a6fc-1fcf3a2ca686
[2026-04-29 04:27:44]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-29 04:27:44]  is_altstaged=None
[2026-04-29 04:27:44]  is_tar=False
[2026-04-29 04:27:44]  lfn=log.49863752._002017.job.log.tgz.1
[2026-04-29 04:27:44]  mtime=0
[2026-04-29 04:27:44]  protocol_id=None
[2026-04-29 04:27:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-29 04:27:44]  replicas=None
[2026-04-29 04:27:44]  scope=mc23_13p6TeV
[2026-04-29 04:27:44]  status=None
[2026-04-29 04:27:44]  status_code=0
[2026-04-29 04:27:44]  storage_token=
[2026-04-29 04:27:44]  surl=/tmp/job_11557247/atlas/pilot/slots/0/PanDA_Pilot-7116970048/log.49863752._002017.job.log.tgz.1
[2026-04-29 04:27:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/4b/log.49863752._002017.job.log.tgz.1
[2026-04-29 04:27:44]  workdir=None
[2026-04-29 04:27:44] ]
[2026-04-29 04:27:44] 2026-04-29 02:26:50,500 | INFO     | transferring file log.49863752._002017.job.log.tgz.1 from /tmp/job_11557247/atlas/pilot/slots/0/PanDA_Pilot-7116970048/log.49863752._002017.job.log.tgz.1 to /tmp/j
[2026-04-29 04:27:44] 2026-04-29 02:26:50,500 | INFO     | executing command: /usr/bin/env mv /tmp/job_11557247/atlas/pilot/slots/0/PanDA_Pilot-7116970048/log.49863752._002017.job.log.tgz.1 /tmp/job_11557247/atlas/pilot/sl
[2026-04-29 04:27:44] 2026-04-29 02:26:50,507 | INFO     | adding to output.list: log.49863752._002017.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/4b/log.49863752._002017.job.log.tg
[2026-04-29 04:27:44] 2026-04-29 02:26:50,508 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 04:27:44] 2026-04-29 02:26:50,508 | INFO     | summary of transferred files:
[2026-04-29 04:27:44] 2026-04-29 02:26:50,508 | INFO     |  -- lfn=log.49863752._002017.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 04:27:44] 2026-04-29 02:26:50,508 | INFO     | stage-out finished correctly
[2026-04-29 04:27:44] 2026-04-29 02:26:50,559 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 04:27:44] 2026-04-29 02:26:51,528 | WARNING  | process 14140 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 04:27:44] 2026-04-29 02:26:51,528 | INFO     | using path: /tmp/job_11557247/atlas/pilot/slots/0/PanDA_Pilot-7116970048/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 04:27:44] 2026-04-29 02:26:51,606 | INFO     | number of running child processes to parent process 14140: 1
[2026-04-29 04:27:44] 2026-04-29 02:26:51,606 | INFO     | maximum number of monitored processes: 6
[2026-04-29 04:27:44] 2026-04-29 02:26:52,110 | INFO     | job 7116970048 has state=finished
[2026-04-29 04:27:44] 2026-04-29 02:26:52,110 | INFO     | preparing for final server update for job 7116970048 in state='finished'
[2026-04-29 04:27:44] 2026-04-29 02:26:52,110 | INFO     | reading metadata from: /tmp/job_11557247/atlas/pilot/slots/0/PanDA_Pilot-7116970048/jobReport.json
[2026-04-29 04:27:44] 2026-04-29 02:26:52,111 | INFO     | added worker_node to metadata from /tmp/job_11557247/atlas/pilot/slots/0/workernode_map.json
[2026-04-29 04:27:44] 2026-04-29 02:26:52,111 | INFO     | this job has now completed (state=finished)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,111 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,111 | INFO     | log transfer has been attempted: DONE
[2026-04-29 04:27:44] 2026-04-29 02:26:52,111 | INFO     | job 7116970048 has finished - writing final server update
[2026-04-29 04:27:44] 2026-04-29 02:26:52,111 | INFO     | total number of processed events: 400 (read)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,129 | INFO     | using path: /tmp/job_11557247/atlas/pilot/slots/0/PanDA_Pilot-7116970048/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,129 | INFO     | extracted standard info from prmon json
[2026-04-29 04:27:44] 2026-04-29 02:26:52,129 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 04:27:44] 2026-04-29 02:26:52,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 04:27:44] 2026-04-29 02:26:52,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 04:27:44] 2026-04-29 02:26:52,130 | INFO     | fitting pss+swap vs Time
[2026-04-29 04:27:44] 2026-04-29 02:26:52,130 | INFO     | sum of square deviations: 51573060.0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | sum of deviations: -707600366.0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | mean x (centered): 0.0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | mean y: 2589243.0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | intersect: 2589243.0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | chi2: 0.005699773999504742
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | current memory leak: -13.72 B/s (using 55 data points, chi2=0.01)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | could have reported an average CPU frequency of 2380 MHz (6 samples)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | ..............................
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . Timing measurements:
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . get job = 0 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . initial setup = 2 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . payload setup = 3 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . stage-in = 0 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . payload execution = 3779 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . stage-out = 0 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | . log creation = 0 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,131 | INFO     | ..............................
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | 
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | job summary report
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | --------------------------------------------------
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | PanDA job id: 7116970048
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | task id: 49863752
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | errors: (none)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | pilot state: finished 
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | transexitcode: 0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | exeerrorcode: 0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | exeerrordiag: 
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | exitcode: 0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,180 | INFO     | exitmsg: OK
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | cpuconsumptiontime: 27796 s
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | nevents: 400
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | neventsw: 0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | pid: 14140
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | pgrp: 14140
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | corecount: 8
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | event service: False
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | sizes: {0: 2282650, 11: 2282650, 3786: 2308607, 3787: 2317691, 3788: 2317829}
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | --------------------------------------------------
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | 
[2026-04-29 04:27:44] 2026-04-29 02:26:52,181 | INFO     | executing command: ls -lF /tmp/job_11557247/atlas/pilot/slots/0
[2026-04-29 04:27:44] 2026-04-29 02:26:52,190 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,190 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,190 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,190 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,190 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,190 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | job 7116970048 has completed (purged errors)
[2026-04-29 04:27:44] 2026-04-29 02:26:52,191 | INFO     | overall cleanup function is called
[2026-04-29 04:27:44] 2026-04-29 02:26:53,197 | INFO     | --- collectZombieJob: --- 10, [14140]
[2026-04-29 04:27:44] 2026-04-29 02:26:53,197 | INFO     | zombie collector waiting for pid 14140
[2026-04-29 04:27:44] 2026-04-29 02:26:53,197 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 04:27:44] 2026-04-29 02:26:53,197 | INFO     | collected zombie processes
[2026-04-29 04:27:44] 2026-04-29 02:26:53,197 | INFO     | will attempt to kill all subprocesses of pid=14140
[2026-04-29 04:27:44] 2026-04-29 02:26:53,280 | INFO     | process IDs to be killed: [14140] (in reverse order)
[2026-04-29 04:27:44] 2026-04-29 02:26:53,317 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 04:27:44] 2026-04-29 02:26:53,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 04:27:44] 2026-04-29 02:26:53,321 | INFO     | did not find any defunct processes belonging to 14140
[2026-04-29 04:27:44] 2026-04-29 02:26:53,324 | INFO     | did not find any defunct processes belonging to 14140
[2026-04-29 04:27:44] 2026-04-29 02:26:53,324 | INFO     | Ready for new job
[2026-04-29 04:27:44] 2026-04-29 02:26:53,325 | INFO     | ***************************************
[2026-04-29 04:27:44] 2026-04-29 02:26:53,325 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 04:27:44] 2026-04-29 02:26:53,325 | INFO     | ***************************************
[2026-04-29 04:27:44] 2026-04-29 02:26:53,325 | INFO     | 
[2026-04-29 04:27:44] 2026-04-29 02:26:53,339 | INFO     | architecture information:
[2026-04-29 04:27:44] 2026-04-29 02:26:53,340 | INFO     | executing command: cat /etc/os-release
[2026-04-29 04:27:44] 2026-04-29 02:26:53,346 | INFO     | cat /etc/os-release:
[2026-04-29 04:27:44] NAME="CentOS Linux"
[2026-04-29 04:27:44] VERSION="7 (Core)"
[2026-04-29 04:27:44] ID="centos"
[2026-04-29 04:27:44] ID_LIKE="rhel fedora"
[2026-04-29 04:27:44] VERSION_ID="7"
[2026-04-29 04:27:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 04:27:44] ANSI_COLOR="0;31"
[2026-04-29 04:27:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 04:27:44] HOME_URL="https://www.centos.org/"
[2026-04-29 04:27:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 04:27:44] 
[2026-04-29 04:27:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 04:27:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 04:27:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 04:27:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 04:27:44] 
[2026-04-29 04:27:44] 2026-04-29 02:26:53,346 | INFO     | ***************************************
[2026-04-29 04:27:44] 2026-04-29 02:26:53,849 | INFO     | executing command: df -mP /tmp/job_11557247/atlas/pilot/slots/0
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | INFO     | sufficient remaining disk space (220543844352 B)
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | INFO     | update_server=False
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 04:27:44] 2026-04-29 02:26:53,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 04:27:44] 2026-04-29 02:26:53,969 | INFO     | all job control threads have been joined
[2026-04-29 04:27:44] 2026-04-29 02:26:54,109 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-29 04:27:44] 2026-04-29 02:26:54,109 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-29 04:27:44] 2026-04-29 02:26:54,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 04:27:44] 2026-04-29 02:26:54,109 | INFO     | will abort loop
[2026-04-29 04:27:44] 2026-04-29 02:26:54,150 | INFO     | all data control threads have been joined
[2026-04-29 04:27:44] 2026-04-29 02:26:54,264 | INFO     | all payload control threads have been joined
[2026-04-29 04:27:44] 2026-04-29 02:26:54,860 | INFO     | [job] retrieve thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:54,861 | INFO     | [job] queue monitor thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:54,974 | INFO     | [job] control thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,114 | INFO     | [job] job monitor thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,147 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,155 | INFO     | [data] control thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,253 | INFO     | [job] validate thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,270 | INFO     | [payload] control thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,478 | INFO     | [payload] failed_post thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,539 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,638 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,669 | INFO     | [data] copytool_in thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,861 | INFO     | [data] copytool_out thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:55,938 | INFO     | [payload] validate_post thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:26:56,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 04:27:44] 2026-04-29 02:27:00,616 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:27:04,876 | INFO     | job.realtimelogging is not enabled
[2026-04-29 04:27:44] 2026-04-29 02:27:05,881 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 04:27:44] 2026-04-29 02:27:23,758 | INFO     | PID=9570 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-29 04:27:44] 2026-04-29 02:27:23,758 | INFO     | .. there are 4 such processes running
[2026-04-29 04:27:44] 2026-04-29 02:27:23,759 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 04:27:44] 2026-04-29 02:27:23,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 04:27:44] 2026-04-29 02:27:23,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 04:27:44] 2026-04-29 02:27:38,238 | INFO     | [monitor] cgroup control has ended
[2026-04-29 04:27:44] 2026-04-29 02:27:39,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065464064)>']
[2026-04-29 04:27:44] 2026-04-29 02:27:39,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 04:27:44] 2026-04-29 02:27:39,840 | INFO     | [monitor] control thread has ended
[2026-04-29 04:27:44] 2026-04-29 02:27:44,672 | INFO     | all workflow threads have been joined
[2026-04-29 04:27:44] 2026-04-29 02:27:44,672 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 04:27:44] 2026-04-29 02:27:44,672 | INFO     | traces error code: 0
[2026-04-29 04:27:44] 2026-04-29 02:27:44,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 04:27:44] 2026-04-29 02:27:44,724 [wrapper] ==== pilot stdout END ====
[2026-04-29 04:27:44] 2026-04-29 02:27:44,726 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 04:27:44] 2026-04-29 02:27:44,727 [wrapper] pilotpid: 9570
[2026-04-29 04:27:44] 2026-04-29 02:27:44,728 [wrapper] Pilot exit status: 0
[2026-04-29 04:27:44] 2026-04-29 02:27:44,732 [wrapper] pandaids: 7116970048
[2026-04-29 04:27:44] 2026-04-29 02:27:44,756 [wrapper] cleanup supervisor_pilot 20539 9571
[2026-04-29 04:27:44] 2026-04-29 02:27:44,758 [wrapper] Test setup, not cleaning
[2026-04-29 04:27:44] 2026-04-29 02:27:44,759 [wrapper] apfmon messages muted
[2026-04-29 04:27:44] 2026-04-29 02:27:44,760 [wrapper] ==== wrapper stdout END ====
[2026-04-29 04:27:44] 2026-04-29 02:27:44,761 [wrapper] ==== wrapper stderr END ====
[2026-04-29 04:27:44]  *** Error codes and diagnostics ***
[2026-04-29 04:27:44]     "exeErrorCode": 0,
[2026-04-29 04:27:44]     "pilotErrorCode": 0,
[2026-04-29 04:27:44]  *** Listing of results directory ***
[2026-04-29 04:27:44] total 469896
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user    683926 Apr 28 22:25 pilot3.tar.gz
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      5631 Apr 28 22:25 queuedata.json
[2026-04-29 04:27:44] -rwx------ 1 mf493845 unix-user     36322 Apr 28 22:26 runpilot2-wrapper.sh
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user       100 Apr 29 02:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 04:27:44] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 29 02:16 run_atlas
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user       105 Apr 29 02:16 job.xml
[2026-04-29 04:27:44] -rw-r--r-- 2 mf493845 unix-user 261004798 Apr 29 03:23 EVNT.49863749._000085.pool.root.1
[2026-04-29 04:27:44] -rw-r--r-- 2 mf493845 unix-user     15667 Apr 29 03:23 start_atlas.sh
[2026-04-29 04:27:44] drwxrwx--x 2 mf493845 unix-user       100 Apr 29 03:23 shared
[2026-04-29 04:27:44] -rw-r--r-- 2 mf493845 unix-user    697413 Apr 29 03:23 input.tar.gz
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      6308 Apr 29 03:23 init_data.xml
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user         0 Apr 29 03:23 boinc_setup_complete
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      8192 Apr 29 03:23 boinc_mmap_file
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user         0 Apr 29 03:23 boinc_lockfile
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      2586 Apr 29 03:23 pandaJob.out
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user   1001138 Apr 29 03:23 agis_schedconf.cvmfs.json
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user   1512704 Apr 29 03:23 agis_ddmendpoints.agis.ALL.json
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user       416 Apr 29 03:23 workernode_map.json
[2026-04-29 04:27:44] drwx------ 5 mf493845 unix-user       520 Apr 29 03:23 pilot3
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user 214652701 Apr 29 04:26 HITS.49863752._002017.pool.root.1
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      1025 Apr 29 04:26 memory_monitor_summary.json
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user    299015 Apr 29 04:26 log.49863752._002017.job.log.tgz.1
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      6312 Apr 29 04:26 heartbeat_new.json
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      6202 Apr 29 04:26 heartbeat.json
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user        95 Apr 29 04:27 pilot_heartbeat.json
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      5091 Apr 29 04:27 pilotlog.txt
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user    404064 Apr 29 04:27 log.49863752._002017.job.log.1
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user       357 Apr 29 04:27 output.list
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user       410 Apr 29 04:27 runtime_log
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user    716800 Apr 29 04:27 result.tar.gz
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user      8842 Apr 29 04:27 runtime_log.err
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user       643 Apr 29 04:27 17eb4e6e0a66.diag
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user     21689 Apr 29 04:27 stderr.txt
[2026-04-29 04:27:44] HITS file was successfully produced:
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user 214652701 Apr 29 04:26 shared/HITS.pool.root.1
[2026-04-29 04:27:44]  *** Contents of shared directory: ***
[2026-04-29 04:27:44] total 465912
[2026-04-29 04:27:44] -rw-r--r-- 2 mf493845 unix-user 261004798 Apr 29 03:23 ATLAS.root_0
[2026-04-29 04:27:44] -rw-r--r-- 2 mf493845 unix-user     15667 Apr 29 03:23 start_atlas.sh
[2026-04-29 04:27:44] -rw-r--r-- 2 mf493845 unix-user    697413 Apr 29 03:23 input.tar.gz
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user 214652701 Apr 29 04:26 HITS.pool.root.1
[2026-04-29 04:27:44] -rw------- 1 mf493845 unix-user    716800 Apr 29 04:27 result.tar.gz
04:27:46 (5534): run_atlas exited; CPU time 27845.798725
04:27:46 (5534): called boinc_finish(0)

</stderr_txt>
]]>

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