Stderr output

<core_client_version>8.2.10</core_client_version>
<![CDATA[
<stderr_txt>
02:20:07 (16415): wrapper (7.7.26015): starting
02:20:07 (16415): wrapper: running run_atlas (--nthreads 8)
[2026-04-29 02:20:07] Arguments: --nthreads 8
[2026-04-29 02:20:07] Threads: 8
[2026-04-29 02:20:07] Checking for CVMFS
[2026-04-29 02:20:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 02:20:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 02:20:07] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 02:20:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 02:20:07] 2.11.0.0 4098 1043 58776 158987 0 49 1939283 4096001 92 130560 0 1140373 99.420 707646 1072 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-29 02:20:07] CVMFS is ok
[2026-04-29 02:20:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 02:20:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 02:20:07] Further information can be found at the LHC@home message board.
[2026-04-29 02:20:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 02:20:07] Checking for apptainer binary...
[2026-04-29 02:20:07] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-29 02:20:07] apptainer is not installed, using version from CVMFS
[2026-04-29 02:20:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 02:20:07] WARNING: Environment variable TMPDIR already has value [/tmp/job_11556944/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node297
[2026-04-29 02:20:07] apptainer works
[2026-04-29 02:20:07] Set ATHENA_PROC_NUMBER=8
[2026-04-29 02:20:07] Set ATHENA_CORE_NUMBER=8
[2026-04-29 02:20:07] Starting ATLAS job with PandaID=7116971122
[2026-04-29 02:20:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11556944/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 03:22:38]  *** The last 200 lines of the pilot log: ***
[2026-04-29 03:22:38]  domain=
[2026-04-29 03:22:38]  filesize=306046
[2026-04-29 03:22:38]  filetype=log
[2026-04-29 03:22:38]  guid=2a102fb4-ea0c-4420-9b23-aee221acd97c
[2026-04-29 03:22:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-29 03:22:38]  is_altstaged=None
[2026-04-29 03:22:38]  is_tar=False
[2026-04-29 03:22:38]  lfn=log.49863752._002423.job.log.tgz.1
[2026-04-29 03:22:38]  mtime=0
[2026-04-29 03:22:38]  protocol_id=None
[2026-04-29 03:22:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-29 03:22:38]  replicas=None
[2026-04-29 03:22:38]  scope=mc23_13p6TeV
[2026-04-29 03:22:38]  status=None
[2026-04-29 03:22:38]  status_code=0
[2026-04-29 03:22:38]  storage_token=
[2026-04-29 03:22:38]  surl=/tmp/job_11556944/atlas/pilot/slots/0/PanDA_Pilot-7116971122/log.49863752._002423.job.log.tgz.1
[2026-04-29 03:22:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/8d/log.49863752._002423.job.log.tgz.1
[2026-04-29 03:22:38]  workdir=None
[2026-04-29 03:22:38] ]
[2026-04-29 03:22:38] 2026-04-29 01:22:15,366 | INFO     | transferring file log.49863752._002423.job.log.tgz.1 from /tmp/job_11556944/atlas/pilot/slots/0/PanDA_Pilot-7116971122/log.49863752._002423.job.log.tgz.1 to /tmp/j
[2026-04-29 03:22:38] 2026-04-29 01:22:15,367 | INFO     | executing command: /usr/bin/env mv /tmp/job_11556944/atlas/pilot/slots/0/PanDA_Pilot-7116971122/log.49863752._002423.job.log.tgz.1 /tmp/job_11556944/atlas/pilot/sl
[2026-04-29 03:22:38] 2026-04-29 01:22:15,375 | INFO     | adding to output.list: log.49863752._002423.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/8d/log.49863752._002423.job.log.tg
[2026-04-29 03:22:38] 2026-04-29 01:22:15,375 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 03:22:38] 2026-04-29 01:22:15,375 | INFO     | summary of transferred files:
[2026-04-29 03:22:38] 2026-04-29 01:22:15,375 | INFO     |  -- lfn=log.49863752._002423.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 03:22:38] 2026-04-29 01:22:15,375 | INFO     | stage-out finished correctly
[2026-04-29 03:22:38] 2026-04-29 01:22:16,201 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 03:22:38] 2026-04-29 01:22:16,395 | WARNING  | process 26868 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 03:22:38] 2026-04-29 01:22:16,395 | INFO     | using path: /tmp/job_11556944/atlas/pilot/slots/0/PanDA_Pilot-7116971122/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 03:22:38] 2026-04-29 01:22:16,466 | INFO     | number of running child processes to parent process 26868: 1
[2026-04-29 03:22:38] 2026-04-29 01:22:16,466 | INFO     | maximum number of monitored processes: 6
[2026-04-29 03:22:38] 2026-04-29 01:22:18,478 | INFO     | job 7116971122 has state=finished
[2026-04-29 03:22:38] 2026-04-29 01:22:18,478 | INFO     | preparing for final server update for job 7116971122 in state='finished'
[2026-04-29 03:22:38] 2026-04-29 01:22:18,478 | INFO     | reading metadata from: /tmp/job_11556944/atlas/pilot/slots/0/PanDA_Pilot-7116971122/jobReport.json
[2026-04-29 03:22:38] 2026-04-29 01:22:18,479 | INFO     | added worker_node to metadata from /tmp/job_11556944/atlas/pilot/slots/0/workernode_map.json
[2026-04-29 03:22:38] 2026-04-29 01:22:18,479 | INFO     | this job has now completed (state=finished)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,479 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,480 | INFO     | log transfer has been attempted: DONE
[2026-04-29 03:22:38] 2026-04-29 01:22:18,480 | INFO     | job 7116971122 has finished - writing final server update
[2026-04-29 03:22:38] 2026-04-29 01:22:18,480 | INFO     | total number of processed events: 400 (read)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,496 | INFO     | using path: /tmp/job_11556944/atlas/pilot/slots/0/PanDA_Pilot-7116971122/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,497 | INFO     | extracted standard info from prmon json
[2026-04-29 03:22:38] 2026-04-29 01:22:18,497 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 03:22:38] 2026-04-29 01:22:18,497 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 03:22:38] 2026-04-29 01:22:18,497 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | fitting pss+swap vs Time
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | sum of square deviations: 48810217.5
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | sum of deviations: -3699010384.5
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | mean x (centered): 0.0
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | mean y: 2957381.8703703703
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | intersect: 2957381.8703703703
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | chi2: 0.09320980793084925
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | current memory leak: -75.78 B/s (using 54 data points, chi2=0.09)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | could have reported an average CPU frequency of 2365 MHz (6 samples)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | ..............................
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | . Timing measurements:
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | . get job = 0 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | . initial setup = 2 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,498 | INFO     | . payload setup = 3 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,499 | INFO     | . stage-in = 0 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,499 | INFO     | . payload execution = 3702 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,499 | INFO     | . stage-out = 0 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,499 | INFO     | . log creation = 0 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,499 | INFO     | ..............................
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | 
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | job summary report
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | --------------------------------------------------
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | PanDA job id: 7116971122
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | task id: 49863752
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | errors: (none)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | pilot state: finished 
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | transexitcode: 0
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | exeerrorcode: 0
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | exeerrordiag: 
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | exitcode: 0
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | exitmsg: OK
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | cpuconsumptiontime: 27871 s
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | nevents: 400
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | neventsw: 0
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | pid: 26868
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | pgrp: 26868
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | corecount: 8
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | event service: False
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | sizes: {0: 2282650, 11: 2282650, 3708: 2308608, 3709: 2317691, 3710: 2317691, 3712: 2317885}
[2026-04-29 03:22:38] 2026-04-29 01:22:18,546 | INFO     | --------------------------------------------------
[2026-04-29 03:22:38] 2026-04-29 01:22:18,547 | INFO     | 
[2026-04-29 03:22:38] 2026-04-29 01:22:18,547 | INFO     | executing command: ls -lF /tmp/job_11556944/atlas/pilot/slots/0
[2026-04-29 03:22:38] 2026-04-29 01:22:18,555 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | job 7116971122 has completed (purged errors)
[2026-04-29 03:22:38] 2026-04-29 01:22:18,556 | INFO     | overall cleanup function is called
[2026-04-29 03:22:38] 2026-04-29 01:22:19,224 | INFO     | PID=21134 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-29 03:22:38] 2026-04-29 01:22:19,562 | INFO     | --- collectZombieJob: --- 10, [26868]
[2026-04-29 03:22:38] 2026-04-29 01:22:19,562 | INFO     | zombie collector waiting for pid 26868
[2026-04-29 03:22:38] 2026-04-29 01:22:19,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 03:22:38] 2026-04-29 01:22:19,562 | INFO     | collected zombie processes
[2026-04-29 03:22:38] 2026-04-29 01:22:19,563 | INFO     | will attempt to kill all subprocesses of pid=26868
[2026-04-29 03:22:38] 2026-04-29 01:22:19,635 | INFO     | process IDs to be killed: [26868] (in reverse order)
[2026-04-29 03:22:38] 2026-04-29 01:22:19,666 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 03:22:38] 2026-04-29 01:22:19,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 03:22:38] 2026-04-29 01:22:19,669 | INFO     | did not find any defunct processes belonging to 26868
[2026-04-29 03:22:38] 2026-04-29 01:22:19,672 | INFO     | did not find any defunct processes belonging to 26868
[2026-04-29 03:22:38] 2026-04-29 01:22:19,672 | INFO     | Ready for new job
[2026-04-29 03:22:38] 2026-04-29 01:22:19,672 | INFO     | ***************************************
[2026-04-29 03:22:38] 2026-04-29 01:22:19,673 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 03:22:38] 2026-04-29 01:22:19,673 | INFO     | ***************************************
[2026-04-29 03:22:38] 2026-04-29 01:22:19,673 | INFO     | 
[2026-04-29 03:22:38] 2026-04-29 01:22:19,687 | INFO     | architecture information:
[2026-04-29 03:22:38] 2026-04-29 01:22:19,687 | INFO     | executing command: cat /etc/os-release
[2026-04-29 03:22:38] 2026-04-29 01:22:19,693 | INFO     | cat /etc/os-release:
[2026-04-29 03:22:38] NAME="CentOS Linux"
[2026-04-29 03:22:38] VERSION="7 (Core)"
[2026-04-29 03:22:38] ID="centos"
[2026-04-29 03:22:38] ID_LIKE="rhel fedora"
[2026-04-29 03:22:38] VERSION_ID="7"
[2026-04-29 03:22:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 03:22:38] ANSI_COLOR="0;31"
[2026-04-29 03:22:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 03:22:38] HOME_URL="https://www.centos.org/"
[2026-04-29 03:22:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 03:22:38] 
[2026-04-29 03:22:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 03:22:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 03:22:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 03:22:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 03:22:38] 
[2026-04-29 03:22:38] 2026-04-29 01:22:19,693 | INFO     | ***************************************
[2026-04-29 03:22:38] 2026-04-29 01:22:20,196 | INFO     | executing command: df -mP /tmp/job_11556944/atlas/pilot/slots/0
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | INFO     | sufficient remaining disk space (222942986240 B)
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | INFO     | update_server=False
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 03:22:38] 2026-04-29 01:22:20,202 | INFO     | aborting loop
[2026-04-29 03:22:38] 2026-04-29 01:22:20,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 03:22:38] 2026-04-29 01:22:20,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 03:22:38] 2026-04-29 01:22:20,226 | INFO     | [monitor] cgroup control has ended
[2026-04-29 03:22:38] 2026-04-29 01:22:20,776 | INFO     | all data control threads have been joined
[2026-04-29 03:22:38] 2026-04-29 01:22:20,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 03:22:38] 2026-04-29 01:22:21,145 | INFO     | all job control threads have been joined
[2026-04-29 03:22:38] 2026-04-29 01:22:21,207 | INFO     | [job] retrieve thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:21,208 | INFO     | [job] queue monitor thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:21,208 | INFO     | [job] job monitor thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:21,231 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:21,556 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:21,557 | INFO     | all payload control threads have been joined
[2026-04-29 03:22:38] 2026-04-29 01:22:21,781 | INFO     | [data] control thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,150 | INFO     | [job] control thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 03:22:38] 2026-04-29 01:22:22,402 | INFO     | [payload] validate_post thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,503 | INFO     | [payload] failed_post thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,562 | INFO     | [payload] control thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,582 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,634 | INFO     | [job] validate thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,649 | INFO     | [data] copytool_in thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:22,936 | INFO     | [data] copytool_out thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:26,259 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:30,976 | INFO     | job.realtimelogging is not enabled
[2026-04-29 03:22:38] 2026-04-29 01:22:31,981 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 03:22:38] 2026-04-29 01:22:33,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067565312)>']
[2026-04-29 03:22:38] 2026-04-29 01:22:33,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 03:22:38] 2026-04-29 01:22:33,268 | INFO     | [monitor] control thread has ended
[2026-04-29 03:22:38] 2026-04-29 01:22:38,218 | INFO     | all workflow threads have been joined
[2026-04-29 03:22:38] 2026-04-29 01:22:38,218 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 03:22:38] 2026-04-29 01:22:38,218 | INFO     | traces error code: 0
[2026-04-29 03:22:38] 2026-04-29 01:22:38,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 03:22:38] 2026-04-29 01:22:38,271 [wrapper] ==== pilot stdout END ====
[2026-04-29 03:22:38] 2026-04-29 01:22:38,272 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 03:22:38] 2026-04-29 01:22:38,273 [wrapper] pilotpid: 21134
[2026-04-29 03:22:38] 2026-04-29 01:22:38,274 [wrapper] Pilot exit status: 0
[2026-04-29 03:22:38] 2026-04-29 01:22:38,278 [wrapper] pandaids: 7116971122
[2026-04-29 03:22:38] 2026-04-29 01:22:38,299 [wrapper] cleanup supervisor_pilot 12712 21135
[2026-04-29 03:22:38] 2026-04-29 01:22:38,300 [wrapper] Test setup, not cleaning
[2026-04-29 03:22:38] 2026-04-29 01:22:38,301 [wrapper] apfmon messages muted
[2026-04-29 03:22:38] 2026-04-29 01:22:38,302 [wrapper] ==== wrapper stdout END ====
[2026-04-29 03:22:38] 2026-04-29 01:22:38,303 [wrapper] ==== wrapper stderr END ====
[2026-04-29 03:22:38]  *** Error codes and diagnostics ***
[2026-04-29 03:22:38]     "exeErrorCode": 0,
[2026-04-29 03:22:38]     "pilotErrorCode": 0,
[2026-04-29 03:22:38]  *** Listing of results directory ***
[2026-04-29 03:22:38] total 464176
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user    683926 Apr 28 22:25 pilot3.tar.gz
[2026-04-29 03:22:38] -rwx------ 1 mf493845 unix-user     36322 Apr 28 22:26 runpilot2-wrapper.sh
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      5631 Apr 28 22:27 queuedata.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user       100 Apr 29 01:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 03:22:38] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 29 01:14 run_atlas
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user       105 Apr 29 01:14 job.xml
[2026-04-29 03:22:38] -rw-r--r-- 2 mf493845 unix-user 257589812 Apr 29 02:20 EVNT.49863749._000101.pool.root.1
[2026-04-29 03:22:38] -rw-r--r-- 2 mf493845 unix-user     15667 Apr 29 02:20 start_atlas.sh
[2026-04-29 03:22:38] drwxrwx--x 2 mf493845 unix-user       100 Apr 29 02:20 shared
[2026-04-29 03:22:38] -rw-r--r-- 2 mf493845 unix-user    697417 Apr 29 02:20 input.tar.gz
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      6306 Apr 29 02:20 init_data.xml
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user         0 Apr 29 02:20 boinc_setup_complete
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      8192 Apr 29 02:20 boinc_mmap_file
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user         0 Apr 29 02:20 boinc_lockfile
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      2586 Apr 29 02:20 pandaJob.out
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user   1001138 Apr 29 02:20 agis_schedconf.cvmfs.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user   1512704 Apr 29 02:20 agis_ddmendpoints.agis.ALL.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user       416 Apr 29 02:20 workernode_map.json
[2026-04-29 03:22:38] drwx------ 5 mf493845 unix-user       520 Apr 29 02:20 pilot3
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user 212230251 Apr 29 03:21 HITS.49863752._002423.pool.root.1
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user        95 Apr 29 03:22 pilot_heartbeat.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      1018 Apr 29 03:22 memory_monitor_summary.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user    306046 Apr 29 03:22 log.49863752._002423.job.log.tgz.1
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      6327 Apr 29 03:22 heartbeat_new.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      6217 Apr 29 03:22 heartbeat.json
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      4637 Apr 29 03:22 pilotlog.txt
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user    384941 Apr 29 03:22 log.49863752._002423.job.log.1
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user       357 Apr 29 03:22 output.list
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user       410 Apr 29 03:22 runtime_log
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user    706560 Apr 29 03:22 result.tar.gz
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user      8842 Apr 29 03:22 runtime_log.err
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user       644 Apr 29 03:22 17f6768fe08e.diag
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user     21608 Apr 29 03:22 stderr.txt
[2026-04-29 03:22:38] HITS file was successfully produced:
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user 212230251 Apr 29 03:21 shared/HITS.pool.root.1
[2026-04-29 03:22:38]  *** Contents of shared directory: ***
[2026-04-29 03:22:38] total 460208
[2026-04-29 03:22:38] -rw-r--r-- 2 mf493845 unix-user 257589812 Apr 29 02:20 ATLAS.root_0
[2026-04-29 03:22:38] -rw-r--r-- 2 mf493845 unix-user     15667 Apr 29 02:20 start_atlas.sh
[2026-04-29 03:22:38] -rw-r--r-- 2 mf493845 unix-user    697417 Apr 29 02:20 input.tar.gz
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user 212230251 Apr 29 03:21 HITS.pool.root.1
[2026-04-29 03:22:38] -rw------- 1 mf493845 unix-user    706560 Apr 29 03:22 result.tar.gz
03:22:40 (16415): run_atlas exited; CPU time 27914.606775
03:22:40 (16415): called boinc_finish(0)

</stderr_txt>
]]>

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