Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:31:18 (1890117): wrapper (7.7.26015): starting
17:31:18 (1890117): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 17:31:18] Arguments: --nthreads 8
[2026-04-28 17:31:18] Threads: 8
[2026-04-28 17:31:18] Checking for CVMFS
[2026-04-28 17:31:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 17:31:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 17:31:18] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 17:31:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 17:31:19] 2.13.3.0 12525 250778 259288 158982 3 747 30706996 40960000 43248 16776704 0 1678586885 99.737 1266815411 33361 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-28 17:31:19] CVMFS is ok
[2026-04-28 17:31:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 17:31:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 17:31:19] Further information can be found at the LHC@home message board.
[2026-04-28 17:31:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 17:31:19] Checking for apptainer binary...
[2026-04-28 17:31:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 17:31:19] Running /usr/bin/apptainer --version
[2026-04-28 17:31:19] apptainer version 1.4.5-3.el9
[2026-04-28 17:31:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 17:31:19] c7-4-30.aglt2.org
[2026-04-28 17:31:19] apptainer works
[2026-04-28 17:31:20] Set ATHENA_PROC_NUMBER=8
[2026-04-28 17:31:20] Set ATHENA_CORE_NUMBER=8
[2026-04-28 17:31:20] Starting ATLAS job with PandaID=7116904251
[2026-04-28 17:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:30:28 (3882077): wrapper (7.7.26015): starting
21:30:28 (3882077): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 21:30:28] Arguments: --nthreads 8
[2026-04-28 21:30:28] Threads: 8
[2026-04-28 21:30:28] This job has been restarted, cleaning up previous attempt
[2026-04-28 21:30:28] Checking for CVMFS
[2026-04-28 21:30:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 21:30:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 21:30:29] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 21:30:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 21:30:29] 2.13.3.0 12525 251017 253148 158988 1 471 36235096 40959945 39612 16776704 0 1681645880 99.737 1268454987 33356 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-28 21:30:29] CVMFS is ok
[2026-04-28 21:30:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 21:30:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 21:30:29] Further information can be found at the LHC@home message board.
[2026-04-28 21:30:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 21:30:29] Checking for apptainer binary...
[2026-04-28 21:30:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 21:30:29] Running /usr/bin/apptainer --version
[2026-04-28 21:30:29] apptainer version 1.4.5-3.el9
[2026-04-28 21:30:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 21:30:29] c7-4-30.aglt2.org
[2026-04-28 21:30:29] apptainer works
[2026-04-28 21:30:29] Set ATHENA_PROC_NUMBER=8
[2026-04-28 21:30:29] Set ATHENA_CORE_NUMBER=8
[2026-04-28 21:30:29] Starting ATLAS job with PandaID=7116904251
[2026-04-28 21:30:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 11:27:32]  *** The last 200 lines of the pilot log: ***
[2026-04-29 11:27:33] 2026-04-29 15:26:43,632 | INFO     | job 7116904251 has finished - writing final server update
[2026-04-29 11:27:33] 2026-04-29 15:26:43,633 | INFO     | total number of processed events: 400 (read)
[2026-04-29 11:27:33] 2026-04-29 15:26:43,760 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-7116904251/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 11:27:33] 2026-04-29 15:26:43,761 | INFO     | extracted standard info from prmon json
[2026-04-29 11:27:33] 2026-04-29 15:26:43,789 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 11:27:33] 2026-04-29 15:26:43,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 11:27:33] 2026-04-29 15:26:43,822 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 11:27:33] 2026-04-29 15:26:44,070 | INFO     | fitting pss+swap vs Time
[2026-04-29 11:27:33] 2026-04-29 15:26:44,071 | INFO     | sum of square deviations: 172222572367.51343
[2026-04-29 11:27:33] 2026-04-29 15:26:44,280 | INFO     | sum of deviations: 202352509310.23572
[2026-04-29 11:27:33] 2026-04-29 15:26:44,281 | INFO     | mean x (centered): 0.0
[2026-04-29 11:27:33] 2026-04-29 15:26:44,281 | INFO     | mean y: 2522084.6618004865
[2026-04-29 11:27:33] 2026-04-29 15:26:44,281 | INFO     | intersect: 2522084.6618004865
[2026-04-29 11:27:33] 2026-04-29 15:26:44,282 | INFO     | chi2: 2.24304536245349
[2026-04-29 11:27:33] 2026-04-29 15:26:44,284 | INFO     | sum of square deviations: 169098995843.87515
[2026-04-29 11:27:33] 2026-04-29 15:26:44,326 | INFO     | monitor loop #2404: job 0:7116904251 is in state 'finished'
[2026-04-29 11:27:33] 2026-04-29 15:26:44,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,400 | INFO     | sum of deviations: 255759782107.54382
[2026-04-29 11:27:33] 2026-04-29 15:26:44,401 | INFO     | mean x (centered): 0.0
[2026-04-29 11:27:33] 2026-04-29 15:26:44,403 | INFO     | mean y: 2524678.916768666
[2026-04-29 11:27:33] 2026-04-29 15:26:44,403 | INFO     | intersect: 2524678.916768666
[2026-04-29 11:27:33] 2026-04-29 15:26:44,404 | INFO     | chi2: 1.4850331017300855
[2026-04-29 11:27:33] 2026-04-29 15:26:44,404 | INFO     | current chi2=1.4850331017300855 (change=33.79388903193089 %)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,405 | INFO     | sum of square deviations: 166013420032.72287
[2026-04-29 11:27:33] 2026-04-29 15:26:44,461 | INFO     | sum of deviations: 252983261667.64056
[2026-04-29 11:27:33] 2026-04-29 15:26:44,461 | INFO     | mean x (centered): 0.0
[2026-04-29 11:27:33] 2026-04-29 15:26:44,469 | INFO     | mean y: 2524541.709359606
[2026-04-29 11:27:33] 2026-04-29 15:26:44,469 | INFO     | intersect: 2524541.709359606
[2026-04-29 11:27:33] 2026-04-29 15:26:44,470 | INFO     | chi2: 1.485062582095332
[2026-04-29 11:27:33] 2026-04-29 15:26:44,470 | INFO     | current chi2=1.485062582095332 (change=-0.001985165530127295 %)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,470 | INFO     | right removable region: 811
[2026-04-29 11:27:33] 2026-04-29 15:26:44,471 | INFO     | sum of square deviations: 169098757333.87515
[2026-04-29 11:27:33] 2026-04-29 15:26:44,554 | INFO     | sum of deviations: 68067979947.94982
[2026-04-29 11:27:33] 2026-04-29 15:26:44,555 | INFO     | mean x (centered): 0.0
[2026-04-29 11:27:33] 2026-04-29 15:26:44,555 | INFO     | mean y: 2528624.0257037943
[2026-04-29 11:27:33] 2026-04-29 15:26:44,555 | INFO     | intersect: 2528624.0257037943
[2026-04-29 11:27:33] 2026-04-29 15:26:44,555 | INFO     | chi2: 0.7978205988433636
[2026-04-29 11:27:33] 2026-04-29 15:26:44,556 | INFO     | current chi2=0.7978205988433636 (change=64.43136584760414 %)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,592 | INFO     | sum of square deviations: 166012943012.7229
[2026-04-29 11:27:33] 2026-04-29 15:26:44,657 | INFO     | sum of deviations: 49068524124.76352
[2026-04-29 11:27:33] 2026-04-29 15:26:44,657 | INFO     | mean x (centered): 0.0
[2026-04-29 11:27:33] 2026-04-29 15:26:44,657 | INFO     | mean y: 2529560.384236453
[2026-04-29 11:27:33] 2026-04-29 15:26:44,657 | INFO     | intersect: 2529560.384236453
[2026-04-29 11:27:33] 2026-04-29 15:26:44,658 | INFO     | chi2: 0.767315825911211
[2026-04-29 11:27:33] 2026-04-29 15:26:44,658 | INFO     | current chi2=0.767315825911211 (change=3.8235128268656937 %)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,658 | INFO     | left removable region: 10
[2026-04-29 11:27:33] 2026-04-29 15:26:44,659 | INFO     | sum of square deviations: 159357292668.13733
[2026-04-29 11:27:33] 2026-04-29 15:26:44,722 | INFO     | sum of deviations: 100597584739.10612
[2026-04-29 11:27:33] 2026-04-29 15:26:44,723 | INFO     | mean x (centered): 0.0
[2026-04-29 11:27:33] 2026-04-29 15:26:44,723 | INFO     | mean y: 2532123.695380774
[2026-04-29 11:27:33] 2026-04-29 15:26:44,723 | INFO     | intersect: 2532123.695380774
[2026-04-29 11:27:33] 2026-04-29 15:26:44,745 | INFO     | chi2: 0.004525003870587788
[2026-04-29 11:27:33] 2026-04-29 15:26:44,745 | INFO     | current memory leak: 0.63 B/s (using 801 data points, chi2=0.00)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,746 | INFO     | could have reported an average CPU frequency of 3239 MHz (31 samples)
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | ..............................
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . Timing measurements:
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . get job = 0 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . initial setup = 2 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . payload setup = 17 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . stage-in = 0 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . payload execution = 50114 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . stage-out = 4 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | . log creation = 0 s
[2026-04-29 11:27:33] 2026-04-29 15:26:44,747 | INFO     | ..............................
[2026-04-29 11:27:33] 2026-04-29 15:26:46,032 | INFO     | PID=3904080 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-29 11:27:33] 2026-04-29 15:26:46,032 | INFO     | .. there are 60 such processes running
[2026-04-29 11:27:33] 2026-04-29 15:26:46,334 | INFO     | 
[2026-04-29 11:27:33] 2026-04-29 15:26:46,334 | INFO     | job summary report
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | --------------------------------------------------
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | PanDA job id: 7116904251
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | task id: 49863733
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | errors: (none)
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | pilot state: finished 
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | transexitcode: 0
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | exeerrorcode: 0
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | exeerrordiag: 
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | exitcode: 0
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | exitmsg: OK
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | cpuconsumptiontime: 42106 s
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | nevents: 400
[2026-04-29 11:27:33] 2026-04-29 15:26:46,335 | INFO     | neventsw: 0
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | pid: 3926902
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | pgrp: 3926902
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | corecount: 8
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | event service: False
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | sizes: {0: 2280057, 1: 2282543, 12: 2282543, 50136: 2328392, 50137: 2328391, 50143: 2337445, 50144: 2337629, 50147: 2337823}
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | --------------------------------------------------
[2026-04-29 11:27:33] 2026-04-29 15:26:46,336 | INFO     | 
[2026-04-29 11:27:33] 2026-04-29 15:26:46,344 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-04-29 11:27:33] 2026-04-29 15:26:46,390 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,391 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,391 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,391 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,394 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 11:27:33] 2026-04-29 15:26:46,395 | INFO     | job 7116904251 has completed (purged errors)
[2026-04-29 11:27:33] 2026-04-29 15:26:46,395 | INFO     | overall cleanup function is called
[2026-04-29 11:27:33] 2026-04-29 15:26:47,404 | INFO     | --- collectZombieJob: --- 10, [3926902]
[2026-04-29 11:27:33] 2026-04-29 15:26:47,404 | INFO     | zombie collector waiting for pid 3926902
[2026-04-29 11:27:33] 2026-04-29 15:26:47,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 11:27:33] 2026-04-29 15:26:47,404 | INFO     | collected zombie processes
[2026-04-29 11:27:33] 2026-04-29 15:26:47,404 | INFO     | will attempt to kill all subprocesses of pid=3926902
[2026-04-29 11:27:33] 2026-04-29 15:26:49,903 | INFO     | process IDs to be killed: [3926902] (in reverse order)
[2026-04-29 11:27:33] 2026-04-29 15:26:50,198 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 11:27:33] 2026-04-29 15:26:50,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 11:27:33] 2026-04-29 15:26:50,243 | INFO     | did not find any defunct processes belonging to 3926902
[2026-04-29 11:27:33] 2026-04-29 15:26:50,307 | INFO     | did not find any defunct processes belonging to 3926902
[2026-04-29 11:27:33] 2026-04-29 15:26:50,307 | INFO     | Ready for new job
[2026-04-29 11:27:33] 2026-04-29 15:26:50,313 | INFO     | ***************************************
[2026-04-29 11:27:33] 2026-04-29 15:26:50,313 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 11:27:33] 2026-04-29 15:26:50,313 | INFO     | ***************************************
[2026-04-29 11:27:33] 2026-04-29 15:26:50,314 | INFO     | 
[2026-04-29 11:27:33] 2026-04-29 15:26:50,326 | INFO     | architecture information:
[2026-04-29 11:27:33] 2026-04-29 15:26:50,334 | INFO     | executing command: cat /etc/os-release
[2026-04-29 11:27:33] 2026-04-29 15:26:50,403 | INFO     | cat /etc/os-release:
[2026-04-29 11:27:33] NAME="CentOS Linux"
[2026-04-29 11:27:33] VERSION="7 (Core)"
[2026-04-29 11:27:33] ID="centos"
[2026-04-29 11:27:33] ID_LIKE="rhel fedora"
[2026-04-29 11:27:33] VERSION_ID="7"
[2026-04-29 11:27:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 11:27:33] ANSI_COLOR="0;31"
[2026-04-29 11:27:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 11:27:33] HOME_URL="https://www.centos.org/"
[2026-04-29 11:27:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 11:27:33] 
[2026-04-29 11:27:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 11:27:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 11:27:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 11:27:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 11:27:33] 
[2026-04-29 11:27:33] 2026-04-29 15:26:50,403 | INFO     | ***************************************
[2026-04-29 11:27:33] 2026-04-29 15:26:50,906 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-04-29 11:27:33] 2026-04-29 15:26:50,953 | INFO     | sufficient remaining disk space (113514643456 B)
[2026-04-29 11:27:33] 2026-04-29 15:26:50,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 11:27:33] 2026-04-29 15:26:50,954 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 11:27:33] 2026-04-29 15:26:50,954 | INFO     | update_server=False
[2026-04-29 11:27:33] 2026-04-29 15:26:50,954 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 11:27:33] 2026-04-29 15:26:50,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 11:27:33] 2026-04-29 15:26:50,956 | INFO     | aborting loop
[2026-04-29 11:27:33] 2026-04-29 15:26:50,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 11:27:33] 2026-04-29 15:26:50,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 11:27:33] 2026-04-29 15:26:51,170 | INFO     | all payload control threads have been joined
[2026-04-29 11:27:33] 2026-04-29 15:26:51,358 | INFO     | all job control threads have been joined
[2026-04-29 11:27:33] 2026-04-29 15:26:51,830 | INFO     | all data control threads have been joined
[2026-04-29 11:27:33] 2026-04-29 15:26:51,961 | INFO     | [job] retrieve thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:51,975 | INFO     | [job] job monitor thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:51,976 | INFO     | [job] queue monitor thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,176 | INFO     | [payload] control thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,248 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,249 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,364 | INFO     | [job] control thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,444 | INFO     | [data] copytool_in thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,723 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,724 | INFO     | [job] validate thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,724 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,836 | INFO     | [data] control thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:52,967 | INFO     | [data] copytool_out thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:53,124 | INFO     | [payload] failed_post thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:53,449 | INFO     | [payload] validate_post thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:26:54,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 11:27:33] 2026-04-29 15:26:58,264 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 11:27:33] 2026-04-29 15:27:19,064 | INFO     | PID=3904080 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 11:27:33] 2026-04-29 15:27:19,065 | INFO     | .. there are 61 such processes running
[2026-04-29 11:27:33] 2026-04-29 15:27:19,065 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 11:27:33] 2026-04-29 15:27:19,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 11:27:33] 2026-04-29 15:27:19,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 11:27:33] 2026-04-29 15:27:26,139 | INFO     | [monitor] cgroup control has ended
[2026-04-29 11:27:33] 2026-04-29 15:27:26,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854495614784)>', '<ExcThread(monitor, started 139853773653760)>']
[2026-04-29 11:27:33] 2026-04-29 15:27:27,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 11:27:33] 2026-04-29 15:27:27,118 | INFO     | [monitor] control thread has ended
[2026-04-29 11:27:33] 2026-04-29 15:27:32,023 | INFO     | all workflow threads have been joined
[2026-04-29 11:27:33] 2026-04-29 15:27:32,023 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 11:27:33] 2026-04-29 15:27:32,024 | INFO     | traces error code: 0
[2026-04-29 11:27:33] 2026-04-29 15:27:32,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 11:27:33] 2026-04-29 15:27:32,310 [wrapper] ==== pilot stdout END ====
[2026-04-29 11:27:33] 2026-04-29 15:27:32,314 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 11:27:33] 2026-04-29 15:27:32,317 [wrapper] pilotpid: 3904080
[2026-04-29 11:27:33] 2026-04-29 15:27:32,320 [wrapper] Pilot exit status: 0
[2026-04-29 11:27:33] 2026-04-29 15:27:32,361 [wrapper] pandaids: 7116904251 7116904251
[2026-04-29 11:27:33] 2026-04-29 15:27:32,699 [wrapper] cleanup supervisor_pilot  812948 3904081
[2026-04-29 11:27:33] 2026-04-29 15:27:32,730 [wrapper] Test setup, not cleaning
[2026-04-29 11:27:33] 2026-04-29 15:27:32,768 [wrapper] apfmon messages muted
[2026-04-29 11:27:33] 2026-04-29 15:27:32,795 [wrapper] ==== wrapper stdout END ====
[2026-04-29 11:27:33] 2026-04-29 15:27:32,831 [wrapper] ==== wrapper stderr END ====
[2026-04-29 11:27:33]  *** Error codes and diagnostics ***
[2026-04-29 11:27:33]     "exeErrorCode": 0,
[2026-04-29 11:27:33]     "pilotErrorCode": 0,
[2026-04-29 11:27:33]  *** Listing of results directory ***
[2026-04-29 11:27:33] total 727232
[2026-04-29 11:27:33] drwx------. 5 boincer umatlas      4096 Apr 22 05:13 pilot3
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas    683926 Apr 28 15:44 pilot3.tar.gz
[2026-04-29 11:27:33] -rwx------. 1 boincer umatlas     36322 Apr 28 15:49 runpilot2-wrapper.sh
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas      5631 Apr 28 15:50 queuedata.json
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas       100 Apr 28 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 11:27:33] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 28 17:31 run_atlas
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas       105 Apr 28 17:31 job.xml
[2026-04-29 11:27:33] -rw-r--r--. 3 boincer umatlas 259563122 Apr 28 17:31 EVNT.49863730._000172.pool.root.1
[2026-04-29 11:27:33] -rw-r--r--. 3 boincer umatlas 259563122 Apr 28 17:31 ATLAS.root_0
[2026-04-29 11:27:33] -rw-r--r--. 2 boincer umatlas     15667 Apr 28 17:31 start_atlas.sh
[2026-04-29 11:27:33] drwxrwx--x. 2 boincer umatlas      4096 Apr 28 17:31 shared
[2026-04-29 11:27:33] -rw-r--r--. 2 boincer umatlas    697415 Apr 28 17:31 input.tar.gz
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas         0 Apr 28 17:31 boinc_lockfile
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas      2576 Apr 28 21:30 pandaJob.out
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas        57 Apr 28 21:30 setup.sh.local
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas   1001138 Apr 28 21:30 agis_schedconf.cvmfs.json
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas       429 Apr 28 21:30 workernode_map.json
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas      6864 Apr 29 11:21 init_data.xml
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas 213298102 Apr 29 11:25 HITS.49863733._003998.pool.root.1
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas       489 Apr 29 11:25 boinc_task_state.xml
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas      1048 Apr 29 11:26 memory_monitor_summary.json
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas        96 Apr 29 11:26 pilot_heartbeat.json
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas   1512704 Apr 29 11:26 agis_ddmendpoints.agis.ALL.json
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas    648562 Apr 29 11:26 log.49863733._003998.job.log.tgz.1
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas      6371 Apr 29 11:26 heartbeat_new.json
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas      6262 Apr 29 11:26 heartbeat.json
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas        28 Apr 29 11:27 wrapper_checkpoint.txt
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas      4824 Apr 29 11:27 pilotlog.txt
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas      8192 Apr 29 11:27 boinc_mmap_file
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas   3407356 Apr 29 11:27 log.49863733._003998.job.log.1
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas       357 Apr 29 11:27 output.list
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas       410 Apr 29 11:27 runtime_log
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas   4075520 Apr 29 11:27 result.tar.gz
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas      9045 Apr 29 11:27 runtime_log.err
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas       786 Apr 29 11:27 0f5a69f028ee.diag
[2026-04-29 11:27:33] -rw-r--r--. 1 boincer umatlas     23346 Apr 29 11:27 stderr.txt
[2026-04-29 11:27:33] HITS file was successfully produced:
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas 213298102 Apr 29 11:25 shared/HITS.pool.root.1
[2026-04-29 11:27:33]  *** Contents of shared directory: ***
[2026-04-29 11:27:33] total 466468
[2026-04-29 11:27:33] -rw-r--r--. 3 boincer umatlas 259563122 Apr 28 17:31 ATLAS.root_0
[2026-04-29 11:27:33] -rw-r--r--. 2 boincer umatlas     15667 Apr 28 17:31 start_atlas.sh
[2026-04-29 11:27:33] -rw-r--r--. 2 boincer umatlas    697415 Apr 28 17:31 input.tar.gz
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas 213298102 Apr 29 11:25 HITS.pool.root.1
[2026-04-29 11:27:33] -rw-------. 1 boincer umatlas   4075520 Apr 29 11:27 result.tar.gz
11:27:54 (3882077): run_atlas exited; CPU time 44277.838958
11:27:54 (3882077): called boinc_finish(0)

</stderr_txt>
]]>

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