Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:19:58 (1369024): wrapper (7.7.26015): starting
14:19:58 (1369024): wrapper: running run_atlas (--nthreads 12)
[2026-04-29 14:19:58] Arguments: --nthreads 12
[2026-04-29 14:19:58] Threads: 12
[2026-04-29 14:19:58] Checking for CVMFS
[2026-04-29 14:19:58] No cvmfs_config command found, will try listing directly
[2026-04-29 14:19:58] CVMFS is ok
[2026-04-29 14:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 14:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 14:19:58] Further information can be found at the LHC@home message board.
[2026-04-29 14:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 14:19:58] Checking for apptainer binary...
[2026-04-29 14:19:58] which: no apptainer in ((null))
[2026-04-29 14:19:58] apptainer is not installed, using version from CVMFS
[2026-04-29 14:19:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 14:19:59] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot252/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-04-29 14:19:59] apptainer works
[2026-04-29 14:19:59] Set ATHENA_PROC_NUMBER=12
[2026-04-29 14:19:59] Set ATHENA_CORE_NUMBER=12
[2026-04-29 14:19:59] Starting ATLAS job with PandaID=7116550913
[2026-04-29 14:19:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot252/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 15:11:21]  *** The last 200 lines of the pilot log: ***
[2026-04-29 15:11:21]  surl=/var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/log.49820375._020462.job.log.tgz.1
[2026-04-29 15:11:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/fb/log.49820375._020462.job.log.tgz.1
[2026-04-29 15:11:21]  workdir=None
[2026-04-29 15:11:21] ]
[2026-04-29 15:11:21] 2026-04-29 13:10:38,766 | INFO     | transferring file log.49820375._020462.job.log.tgz.1 from /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/log.49820375._020462.job.log.tgz.1 to /var/lib/
[2026-04-29 15:11:21] 2026-04-29 13:10:38,766 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/log.49820375._020462.job.log.tgz.1 /var/lib/boinc/var/slot252/slots/1/
[2026-04-29 15:11:21] 2026-04-29 13:10:38,784 | INFO     | adding to output.list: log.49820375._020462.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/fb/log.49820375._020462.job.log.tg
[2026-04-29 15:11:21] 2026-04-29 13:10:38,785 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 15:11:21] 2026-04-29 13:10:38,785 | INFO     | summary of transferred files:
[2026-04-29 15:11:21] 2026-04-29 13:10:38,785 | INFO     |  -- lfn=log.49820375._020462.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 15:11:21] 2026-04-29 13:10:38,785 | INFO     | stage-out finished correctly
[2026-04-29 15:11:21] 2026-04-29 13:10:39,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 15:11:21] 2026-04-29 13:10:41,716 | WARNING  | process 1380157 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 15:11:21] 2026-04-29 13:10:41,716 | INFO     | using path: /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,717 | INFO     | using path: /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,717 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-29 15:11:21] 2026-04-29 13:10:41,717 | WARNING  | maxPSS not found in memory monitor output
[2026-04-29 15:11:21] 2026-04-29 13:10:41,717 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 6211258 B
[2026-04-29 15:11:21] 2026-04-29 13:10:41,718 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15618 B
[2026-04-29 15:11:21] 2026-04-29 13:10:41,718 | INFO     | executing command: df -mP /var/lib/boinc/var/slot252/slots/1
[2026-04-29 15:11:21] 2026-04-29 13:10:41,732 | INFO     | sufficient remaining disk space (93156540416 B)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,732 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,733 | INFO     | size of work directory /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913: 6499261 B (within 5033164800 B limit)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,733 | INFO     | pfn file=/var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/HITS.49820375._020462.pool.root.1 does not exist (skip from workdir size calculation)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,733 | INFO     | total size of present files: 0 B (workdir size: 6499261 B)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,733 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/HITS.49820375._020462.pool.root.1 since it does not exist
[2026-04-29 15:11:21] 2026-04-29 13:10:41,781 | INFO     | job 7116550913 has state=finished
[2026-04-29 15:11:21] 2026-04-29 13:10:41,782 | INFO     | preparing for final server update for job 7116550913 in state='finished'
[2026-04-29 15:11:21] 2026-04-29 13:10:41,782 | INFO     | reading metadata from: /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/jobReport.json
[2026-04-29 15:11:21] 2026-04-29 13:10:41,784 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot252/slots/1/workernode_map.json
[2026-04-29 15:11:21] 2026-04-29 13:10:41,784 | INFO     | this job has now completed (state=finished)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,784 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,784 | INFO     | log transfer has been attempted: DONE
[2026-04-29 15:11:21] 2026-04-29 13:10:41,784 | INFO     | job 7116550913 has finished - writing final server update
[2026-04-29 15:11:21] 2026-04-29 13:10:41,785 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2080774/.job.ad'
[2026-04-29 15:11:21] 2026-04-29 13:10:41,785 | INFO     | total number of processed events: 400 (read)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,809 | INFO     | using path: /var/lib/boinc/var/slot252/slots/1/PanDA_Pilot-7116550913/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,809 | INFO     | extracted standard info from prmon json
[2026-04-29 15:11:21] 2026-04-29 13:10:41,809 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 15:11:21] 2026-04-29 13:10:41,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 15:11:21] 2026-04-29 13:10:41,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 15:11:21] 2026-04-29 13:10:41,810 | INFO     | fitting pss+swap vs Time
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | sum of square deviations: 24640462.0
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | sum of deviations: -180996638.00000015
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | mean x (centered): 0.0
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | mean y: 2803175.9534883723
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | intersect: 2803175.9534883723
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | chi2: 0.0005738585118728126
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | current memory leak: -7.35 B/s (using 43 data points, chi2=0.00)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | could have reported an average CPU frequency of 3586 MHz (5 samples)
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | ..............................
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . Timing measurements:
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . get job = 0 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . initial setup = 4 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . payload setup = 6 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . stage-in = 0 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . payload execution = 3005 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . stage-out = 0 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | . log creation = 0 s
[2026-04-29 15:11:21] 2026-04-29 13:10:41,811 | INFO     | ..............................
[2026-04-29 15:11:21] 2026-04-29 13:10:42,085 | INFO     | number of running child processes to parent process 1380157: 1
[2026-04-29 15:11:21] 2026-04-29 13:10:42,085 | INFO     | maximum number of monitored processes: 6
[2026-04-29 15:11:21] 2026-04-29 13:10:42,085 | INFO     | aborting job monitoring since job object (job id=7116550913) has expired
[2026-04-29 15:11:21] 2026-04-29 13:10:42,288 | INFO     | 
[2026-04-29 15:11:21] 2026-04-29 13:10:42,288 | INFO     | job summary report
[2026-04-29 15:11:21] 2026-04-29 13:10:42,288 | INFO     | --------------------------------------------------
[2026-04-29 15:11:21] 2026-04-29 13:10:42,288 | INFO     | PanDA job id: 7116550913
[2026-04-29 15:11:21] 2026-04-29 13:10:42,288 | INFO     | task id: 49820375
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | errors: (none)
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | pilot state: finished 
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | transexitcode: 0
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | exeerrorcode: 0
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | exeerrordiag: 
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | exitcode: 0
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | exitmsg: OK
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | cpuconsumptiontime: 32520 s
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | nevents: 400
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | neventsw: 0
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | pid: 1380157
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | pgrp: 1380157
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | corecount: 12
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | event service: False
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | sizes: {0: 2282528, 11: 2282528, 3015: 2307964, 3017: 2317042, 3020: 2317240}
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | --------------------------------------------------
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | 
[2026-04-29 15:11:21] 2026-04-29 13:10:42,289 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot252/slots/1
[2026-04-29 15:11:21] 2026-04-29 13:10:42,309 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,309 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | job 7116550913 has completed (purged errors)
[2026-04-29 15:11:21] 2026-04-29 13:10:42,310 | INFO     | overall cleanup function is called
[2026-04-29 15:11:21] 2026-04-29 13:10:43,318 | INFO     | --- collectZombieJob: --- 10, [1380157]
[2026-04-29 15:11:21] 2026-04-29 13:10:43,318 | INFO     | zombie collector waiting for pid 1380157
[2026-04-29 15:11:21] 2026-04-29 13:10:43,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 15:11:21] 2026-04-29 13:10:43,318 | INFO     | collected zombie processes
[2026-04-29 15:11:21] 2026-04-29 13:10:43,318 | INFO     | will attempt to kill all subprocesses of pid=1380157
[2026-04-29 15:11:21] 2026-04-29 13:10:43,618 | INFO     | process IDs to be killed: [1380157] (in reverse order)
[2026-04-29 15:11:21] 2026-04-29 13:10:43,766 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 15:11:21] 2026-04-29 13:10:43,767 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 15:11:21] 2026-04-29 13:10:43,790 | INFO     | did not find any defunct processes belonging to 1380157
[2026-04-29 15:11:21] 2026-04-29 13:10:43,812 | INFO     | did not find any defunct processes belonging to 1380157
[2026-04-29 15:11:21] 2026-04-29 13:10:43,812 | INFO     | Ready for new job
[2026-04-29 15:11:21] 2026-04-29 13:10:43,813 | INFO     | ***************************************
[2026-04-29 15:11:21] 2026-04-29 13:10:43,813 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 15:11:21] 2026-04-29 13:10:43,813 | INFO     | ***************************************
[2026-04-29 15:11:21] 2026-04-29 13:10:43,813 | INFO     | 
[2026-04-29 15:11:21] 2026-04-29 13:10:43,819 | INFO     | architecture information:
[2026-04-29 15:11:21] 2026-04-29 13:10:43,819 | INFO     | executing command: cat /etc/os-release
[2026-04-29 15:11:21] 2026-04-29 13:10:43,832 | INFO     | cat /etc/os-release:
[2026-04-29 15:11:21] NAME="CentOS Linux"
[2026-04-29 15:11:21] VERSION="7 (Core)"
[2026-04-29 15:11:21] ID="centos"
[2026-04-29 15:11:21] ID_LIKE="rhel fedora"
[2026-04-29 15:11:21] VERSION_ID="7"
[2026-04-29 15:11:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 15:11:21] ANSI_COLOR="0;31"
[2026-04-29 15:11:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 15:11:21] HOME_URL="https://www.centos.org/"
[2026-04-29 15:11:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 15:11:21] 
[2026-04-29 15:11:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 15:11:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 15:11:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 15:11:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 15:11:21] 
[2026-04-29 15:11:21] 2026-04-29 13:10:43,833 | INFO     | ***************************************
[2026-04-29 15:11:21] 2026-04-29 13:10:44,335 | INFO     | executing command: df -mP /var/lib/boinc/var/slot252/slots/1
[2026-04-29 15:11:21] 2026-04-29 13:10:44,347 | INFO     | sufficient remaining disk space (93162831872 B)
[2026-04-29 15:11:21] 2026-04-29 13:10:44,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 15:11:21] 2026-04-29 13:10:44,348 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 15:11:21] 2026-04-29 13:10:44,348 | INFO     | update_server=False
[2026-04-29 15:11:21] 2026-04-29 13:10:44,348 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 15:11:21] 2026-04-29 13:10:44,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 15:11:21] 2026-04-29 13:10:44,588 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-29 15:11:21] 2026-04-29 13:10:44,589 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-29 15:11:21] 2026-04-29 13:10:44,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 15:11:21] 2026-04-29 13:10:44,589 | INFO     | will abort loop
[2026-04-29 15:11:21] 2026-04-29 13:10:44,780 | INFO     | all data control threads have been joined
[2026-04-29 15:11:21] 2026-04-29 13:10:45,156 | INFO     | all payload control threads have been joined
[2026-04-29 15:11:21] 2026-04-29 13:10:45,353 | INFO     | [job] retrieve thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:45,546 | INFO     | all job control threads have been joined
[2026-04-29 15:11:21] 2026-04-29 13:10:45,591 | INFO     | [job] job monitor thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:45,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 15:11:21] 2026-04-29 13:10:45,756 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:45,785 | INFO     | [data] control thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,161 | INFO     | [payload] control thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,267 | INFO     | [job] validate thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,300 | INFO     | [payload] validate_post thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,353 | INFO     | [data] copytool_out thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,456 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,551 | INFO     | [job] control thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,557 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,644 | INFO     | [data] copytool_in thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,766 | INFO     | [payload] failed_post thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:46,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 15:11:21] 2026-04-29 13:10:47,875 | INFO     | [job] queue monitor thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:49,646 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:10:55,289 | INFO     | job.realtimelogging is not enabled
[2026-04-29 15:11:21] 2026-04-29 13:10:56,295 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 15:11:21] 2026-04-29 13:11:14,045 | INFO     | PID=1374013 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 15:11:21] 2026-04-29 13:11:14,046 | INFO     | .. there are 15 such processes running
[2026-04-29 15:11:21] 2026-04-29 13:11:14,047 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 15:11:21] 2026-04-29 13:11:14,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 15:11:21] 2026-04-29 13:11:14,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 15:11:21] 2026-04-29 13:11:15,371 | INFO     | [monitor] cgroup control has ended
[2026-04-29 15:11:21] 2026-04-29 13:11:16,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23325317216064)>', '<ExcThread(monitor, started 23325006845696)>']
[2026-04-29 15:11:21] 2026-04-29 13:11:17,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 15:11:21] 2026-04-29 13:11:17,062 | INFO     | [monitor] control thread has ended
[2026-04-29 15:11:21] 2026-04-29 13:11:21,124 | INFO     | all workflow threads have been joined
[2026-04-29 15:11:21] 2026-04-29 13:11:21,124 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 15:11:21] 2026-04-29 13:11:21,125 | INFO     | traces error code: 0
[2026-04-29 15:11:21] 2026-04-29 13:11:21,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 15:11:21] 2026-04-29 13:11:21,219 [wrapper] ==== pilot stdout END ====
[2026-04-29 15:11:21] 2026-04-29 13:11:21,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 15:11:21] 2026-04-29 13:11:21,224 [wrapper] pilotpid: 1374013
[2026-04-29 15:11:21] 2026-04-29 13:11:21,226 [wrapper] Pilot exit status: 0
[2026-04-29 15:11:21] 2026-04-29 13:11:21,235 [wrapper] pandaids: 7116550913
[2026-04-29 15:11:21] 2026-04-29 13:11:21,351 [wrapper] cleanup supervisor_pilot 1702907 1374014
[2026-04-29 15:11:21] 2026-04-29 13:11:21,354 [wrapper] Test setup, not cleaning
[2026-04-29 15:11:21] 2026-04-29 13:11:21,357 [wrapper] apfmon messages muted
[2026-04-29 15:11:21] 2026-04-29 13:11:21,359 [wrapper] ==== wrapper stdout END ====
[2026-04-29 15:11:21] 2026-04-29 13:11:21,362 [wrapper] ==== wrapper stderr END ====
[2026-04-29 15:11:21]  *** Error codes and diagnostics ***
[2026-04-29 15:11:21]     "exeErrorCode": 0,
[2026-04-29 15:11:21]     "pilotErrorCode": 0,
[2026-04-29 15:11:21]  *** Listing of results directory ***
[2026-04-29 15:11:21] total 2465212
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc     683926 Apr 28 16:02 pilot3.tar.gz
[2026-04-29 15:11:21] -rwx------. 1 boinc boinc      36322 Apr 28 17:06 runpilot2-wrapper.sh
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc       5631 Apr 28 17:07 queuedata.json
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc        100 Apr 29 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 15:11:21] -rwxr-xr-x. 1 boinc boinc       7986 Apr 29 14:19 run_atlas
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc        105 Apr 29 14:19 job.xml
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc       6630 Apr 29 14:19 init_data.xml
[2026-04-29 15:11:21] -rw-r--r--. 2 boinc boinc 2245309719 Apr 29 14:19 EVNT.49820373._000060.pool.root.1
[2026-04-29 15:11:21] -rw-r--r--. 2 boinc boinc      15667 Apr 29 14:19 start_atlas.sh
[2026-04-29 15:11:21] drwxrwx--x. 2 boinc boinc       4096 Apr 29 14:19 shared
[2026-04-29 15:11:21] -rw-r--r--. 2 boinc boinc     697422 Apr 29 14:19 input.tar.gz
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc          0 Apr 29 14:19 boinc_lockfile
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc       2586 Apr 29 14:19 pandaJob.out
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc    1001891 Apr 29 14:20 agis_schedconf.cvmfs.json
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc    1512704 Apr 29 14:20 agis_ddmendpoints.agis.ALL.json
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc        444 Apr 29 14:20 workernode_map.json
[2026-04-29 15:11:21] drwx------. 5 boinc boinc       4096 Apr 29 14:20 pilot3
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc  273465109 Apr 29 15:10 HITS.49820375._020462.pool.root.1
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc        488 Apr 29 15:10 boinc_task_state.xml
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc       1029 Apr 29 15:10 memory_monitor_summary.json
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc     405179 Apr 29 15:10 log.49820375._020462.job.log.tgz.1
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc       6375 Apr 29 15:10 heartbeat_new.json
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc       6266 Apr 29 15:10 heartbeat.json
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc       8192 Apr 29 15:11 boinc_mmap_file
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc         27 Apr 29 15:11 wrapper_checkpoint.txt
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc         95 Apr 29 15:11 pilot_heartbeat.json
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc       5091 Apr 29 15:11 pilotlog.txt
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc     327688 Apr 29 15:11 log.49820375._020462.job.log.1
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc        357 Apr 29 15:11 output.list
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc        410 Apr 29 15:11 runtime_log
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc     747520 Apr 29 15:11 result.tar.gz
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc       8846 Apr 29 15:11 runtime_log.err
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc        662 Apr 29 15:11 cd0fa4f91bb6.diag
[2026-04-29 15:11:21] -rw-r--r--. 1 boinc boinc      16478 Apr 29 15:11 stderr.txt
[2026-04-29 15:11:21] HITS file was successfully produced:
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc 273465109 Apr 29 15:10 shared/HITS.pool.root.1
[2026-04-29 15:11:21]  *** Contents of shared directory: ***
[2026-04-29 15:11:21] total 2461184
[2026-04-29 15:11:21] -rw-r--r--. 2 boinc boinc 2245309719 Apr 29 14:19 ATLAS.root_0
[2026-04-29 15:11:21] -rw-r--r--. 2 boinc boinc      15667 Apr 29 14:19 start_atlas.sh
[2026-04-29 15:11:21] -rw-r--r--. 2 boinc boinc     697422 Apr 29 14:19 input.tar.gz
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc  273465109 Apr 29 15:10 HITS.pool.root.1
[2026-04-29 15:11:21] -rw-------. 1 boinc boinc     747520 Apr 29 15:11 result.tar.gz
15:11:22 (1369024): run_atlas exited; CPU time 32610.512037
15:11:22 (1369024): called boinc_finish(0)

</stderr_txt>
]]>

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