Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:32:36 (4177260): wrapper (7.7.26015): starting
12:32:36 (4177260): wrapper: running run_atlas (--nthreads 12)
[2026-04-29 12:32:36] Arguments: --nthreads 12
[2026-04-29 12:32:36] Threads: 12
[2026-04-29 12:32:36] Checking for CVMFS
[2026-04-29 12:32:36] No cvmfs_config command found, will try listing directly
[2026-04-29 12:32:36] CVMFS is ok
[2026-04-29 12:32:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 12:32:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 12:32:36] Further information can be found at the LHC@home message board.
[2026-04-29 12:32:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 12:32:36] Checking for apptainer binary...
[2026-04-29 12:32:36] which: no apptainer in ((null))
[2026-04-29 12:32:36] apptainer is not installed, using version from CVMFS
[2026-04-29 12:32:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 12:32:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot192/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-04-29 12:32:36] apptainer works
[2026-04-29 12:32:36] Set ATHENA_PROC_NUMBER=12
[2026-04-29 12:32:36] Set ATHENA_CORE_NUMBER=12
[2026-04-29 12:32:36] Starting ATLAS job with PandaID=7116551158
[2026-04-29 12:32:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot192/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 13:16:57]  *** The last 200 lines of the pilot log: ***
[2026-04-29 13:16:57]  domain=
[2026-04-29 13:16:57]  filesize=326177
[2026-04-29 13:16:57]  filetype=log
[2026-04-29 13:16:57]  guid=3e95287d-a469-424f-874e-3d951b995f7d
[2026-04-29 13:16:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-29 13:16:57]  is_altstaged=None
[2026-04-29 13:16:57]  is_tar=False
[2026-04-29 13:16:57]  lfn=log.49863714._004680.job.log.tgz.1
[2026-04-29 13:16:57]  mtime=0
[2026-04-29 13:16:57]  protocol_id=None
[2026-04-29 13:16:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-29 13:16:57]  replicas=None
[2026-04-29 13:16:57]  scope=mc23_13p6TeV
[2026-04-29 13:16:57]  status=None
[2026-04-29 13:16:57]  status_code=0
[2026-04-29 13:16:57]  storage_token=
[2026-04-29 13:16:57]  surl=/var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116551158/log.49863714._004680.job.log.tgz.1
[2026-04-29 13:16:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/d2/log.49863714._004680.job.log.tgz.1
[2026-04-29 13:16:57]  workdir=None
[2026-04-29 13:16:57] ]
[2026-04-29 13:16:57] 2026-04-29 11:16:03,130 | INFO     | transferring file log.49863714._004680.job.log.tgz.1 from /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116551158/log.49863714._004680.job.log.tgz.1 to /var/lib/
[2026-04-29 13:16:57] 2026-04-29 11:16:03,130 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116551158/log.49863714._004680.job.log.tgz.1 /var/lib/boinc/var/slot192/slots/1/
[2026-04-29 13:16:57] 2026-04-29 11:16:03,148 | INFO     | adding to output.list: log.49863714._004680.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/d2/log.49863714._004680.job.log.tg
[2026-04-29 13:16:57] 2026-04-29 11:16:03,149 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 13:16:57] 2026-04-29 11:16:03,151 | INFO     | summary of transferred files:
[2026-04-29 13:16:57] 2026-04-29 11:16:03,151 | INFO     |  -- lfn=log.49863714._004680.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 13:16:57] 2026-04-29 11:16:03,151 | INFO     | stage-out finished correctly
[2026-04-29 13:16:57] 2026-04-29 11:16:03,222 | INFO     | number of running child processes to parent process 4187736: 1
[2026-04-29 13:16:57] 2026-04-29 11:16:03,222 | INFO     | maximum number of monitored processes: 6
[2026-04-29 13:16:57] 2026-04-29 11:16:04,381 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 13:16:57] 2026-04-29 11:16:05,726 | INFO     | monitor loop #196: job 0:7116551158 is in state 'finished'
[2026-04-29 13:16:57] 2026-04-29 11:16:05,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,242 | INFO     | job 7116551158 has state=finished
[2026-04-29 13:16:57] 2026-04-29 11:16:06,242 | INFO     | preparing for final server update for job 7116551158 in state='finished'
[2026-04-29 13:16:57] 2026-04-29 11:16:06,242 | INFO     | reading metadata from: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116551158/jobReport.json
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot192/slots/1/workernode_map.json
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | INFO     | this job has now completed (state=finished)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | INFO     | log transfer has been attempted: DONE
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | INFO     | job 7116551158 has finished - writing final server update
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2029480/.job.ad'
[2026-04-29 13:16:57] 2026-04-29 11:16:06,244 | INFO     | total number of processed events: 400 (read)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,263 | INFO     | using path: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116551158/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,264 | INFO     | extracted standard info from prmon json
[2026-04-29 13:16:57] 2026-04-29 11:16:06,264 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 13:16:57] 2026-04-29 11:16:06,264 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 13:16:57] 2026-04-29 11:16:06,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | fitting pss+swap vs Time
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | sum of square deviations: 14456085.0
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | sum of deviations: 62853241.00000001
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | mean x (centered): 0.0
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | mean y: 2748289.3333333335
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | intersect: 2748289.3333333335
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | chi2: 0.00021413049285843116
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | current memory leak: 4.35 B/s (using 36 data points, chi2=0.00)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,265 | INFO     | could have reported an average CPU frequency of 3604 MHz (5 samples)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | ..............................
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . Timing measurements:
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . get job = 0 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . initial setup = 4 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . payload setup = 6 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . stage-in = 0 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . payload execution = 2571 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . stage-out = 0 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | . log creation = 0 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,266 | INFO     | ..............................
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | 
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | job summary report
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | --------------------------------------------------
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | PanDA job id: 7116551158
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | task id: 49863714
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | errors: (none)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | pilot state: finished 
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | transexitcode: 0
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | exeerrorcode: 0
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | exeerrordiag: 
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | exitcode: 0
[2026-04-29 13:16:57] 2026-04-29 11:16:06,540 | INFO     | exitmsg: OK
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | cpuconsumptiontime: 27885 s
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | nevents: 400
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | neventsw: 0
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | pid: 4187736
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | pgrp: 4187736
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | corecount: 12
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | event service: False
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | sizes: {0: 2282470, 11: 2282470, 2581: 2307705, 2582: 2307704, 2584: 2316782, 2585: 2316838, 2587: 2317192}
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | --------------------------------------------------
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | 
[2026-04-29 13:16:57] 2026-04-29 11:16:06,541 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot192/slots/1
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,556 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 13:16:57] 2026-04-29 11:16:06,556 | INFO     | job 7116551158 has completed (purged errors)
[2026-04-29 13:16:57] 2026-04-29 11:16:06,556 | INFO     | overall cleanup function is called
[2026-04-29 13:16:57] 2026-04-29 11:16:07,562 | INFO     | --- collectZombieJob: --- 10, [4187736]
[2026-04-29 13:16:57] 2026-04-29 11:16:07,563 | INFO     | zombie collector waiting for pid 4187736
[2026-04-29 13:16:57] 2026-04-29 11:16:07,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 13:16:57] 2026-04-29 11:16:07,563 | INFO     | collected zombie processes
[2026-04-29 13:16:57] 2026-04-29 11:16:07,563 | INFO     | will attempt to kill all subprocesses of pid=4187736
[2026-04-29 13:16:57] 2026-04-29 11:16:07,844 | INFO     | process IDs to be killed: [4187736] (in reverse order)
[2026-04-29 13:16:57] 2026-04-29 11:16:07,985 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 13:16:57] 2026-04-29 11:16:07,985 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 13:16:57] 2026-04-29 11:16:08,007 | INFO     | did not find any defunct processes belonging to 4187736
[2026-04-29 13:16:57] 2026-04-29 11:16:08,028 | INFO     | did not find any defunct processes belonging to 4187736
[2026-04-29 13:16:57] 2026-04-29 11:16:08,028 | INFO     | Ready for new job
[2026-04-29 13:16:57] 2026-04-29 11:16:08,029 | INFO     | ***************************************
[2026-04-29 13:16:57] 2026-04-29 11:16:08,029 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 13:16:57] 2026-04-29 11:16:08,029 | INFO     | ***************************************
[2026-04-29 13:16:57] 2026-04-29 11:16:08,029 | INFO     | 
[2026-04-29 13:16:57] 2026-04-29 11:16:08,035 | INFO     | architecture information:
[2026-04-29 13:16:57] 2026-04-29 11:16:08,035 | INFO     | executing command: cat /etc/os-release
[2026-04-29 13:16:57] 2026-04-29 11:16:08,047 | INFO     | cat /etc/os-release:
[2026-04-29 13:16:57] NAME="CentOS Linux"
[2026-04-29 13:16:57] VERSION="7 (Core)"
[2026-04-29 13:16:57] ID="centos"
[2026-04-29 13:16:57] ID_LIKE="rhel fedora"
[2026-04-29 13:16:57] VERSION_ID="7"
[2026-04-29 13:16:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 13:16:57] ANSI_COLOR="0;31"
[2026-04-29 13:16:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 13:16:57] HOME_URL="https://www.centos.org/"
[2026-04-29 13:16:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 13:16:57] 
[2026-04-29 13:16:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 13:16:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 13:16:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 13:16:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 13:16:57] 
[2026-04-29 13:16:57] 2026-04-29 11:16:08,047 | INFO     | ***************************************
[2026-04-29 13:16:57] 2026-04-29 11:16:08,553 | INFO     | executing command: df -mP /var/lib/boinc/var/slot192/slots/1
[2026-04-29 13:16:57] 2026-04-29 11:16:08,570 | INFO     | sufficient remaining disk space (86894444544 B)
[2026-04-29 13:16:57] 2026-04-29 11:16:08,570 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 13:16:57] 2026-04-29 11:16:08,571 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 13:16:57] 2026-04-29 11:16:08,571 | INFO     | update_server=False
[2026-04-29 13:16:57] 2026-04-29 11:16:08,571 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 13:16:57] 2026-04-29 11:16:08,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 13:16:57] 2026-04-29 11:16:08,733 | INFO     | all data control threads have been joined
[2026-04-29 13:16:57] 2026-04-29 11:16:09,058 | INFO     | all job control threads have been joined
[2026-04-29 13:16:57] 2026-04-29 11:16:09,233 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 13:16:57] 2026-04-29 11:16:09,234 | INFO     | aborting loop
[2026-04-29 13:16:57] 2026-04-29 11:16:09,572 | INFO     | [job] retrieve thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:09,630 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:09,739 | INFO     | [data] control thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:09,755 | INFO     | all payload control threads have been joined
[2026-04-29 13:16:57] 2026-04-29 11:16:09,942 | INFO     | [payload] validate_post thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,064 | INFO     | [job] control thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,239 | INFO     | [job] job monitor thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 13:16:57] 2026-04-29 11:16:10,561 | INFO     | [job] validate thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,562 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,717 | INFO     | [data] copytool_out thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,758 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,759 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,761 | INFO     | [payload] control thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:10,939 | INFO     | [payload] failed_post thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:11,046 | INFO     | [data] copytool_in thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:11,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 13:16:57] 2026-04-29 11:16:12,334 | INFO     | [job] queue monitor thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:14,435 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 13:16:57] 2026-04-29 11:16:38,311 | INFO     | PID=4181809 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 13:16:57] 2026-04-29 11:16:38,315 | INFO     | .. there are 15 such processes running
[2026-04-29 13:16:57] 2026-04-29 11:16:38,315 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 13:16:57] 2026-04-29 11:16:38,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 13:16:57] 2026-04-29 11:16:38,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 13:16:57] 2026-04-29 11:16:51,920 | INFO     | [monitor] cgroup control has ended
[2026-04-29 13:16:57] 2026-04-29 11:16:52,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22462346000192)>', '<ExcThread(monitor, started 22462111958784)>']
[2026-04-29 13:16:57] 2026-04-29 11:16:53,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 13:16:57] 2026-04-29 11:16:53,385 | INFO     | [monitor] control thread has ended
[2026-04-29 13:16:57] 2026-04-29 11:16:57,600 | INFO     | all workflow threads have been joined
[2026-04-29 13:16:57] 2026-04-29 11:16:57,601 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 13:16:57] 2026-04-29 11:16:57,601 | INFO     | traces error code: 0
[2026-04-29 13:16:57] 2026-04-29 11:16:57,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 13:16:57] 2026-04-29 11:16:57,736 [wrapper] ==== pilot stdout END ====
[2026-04-29 13:16:57] 2026-04-29 11:16:57,738 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 13:16:57] 2026-04-29 11:16:57,740 [wrapper] pilotpid: 4181809
[2026-04-29 13:16:57] 2026-04-29 11:16:57,742 [wrapper] Pilot exit status: 0
[2026-04-29 13:16:57] 2026-04-29 11:16:57,751 [wrapper] pandaids: 7116551158
[2026-04-29 13:16:57] 2026-04-29 11:16:57,876 [wrapper] cleanup supervisor_pilot  161777 4181810
[2026-04-29 13:16:57] 2026-04-29 11:16:57,879 [wrapper] Test setup, not cleaning
[2026-04-29 13:16:57] 2026-04-29 11:16:57,881 [wrapper] apfmon messages muted
[2026-04-29 13:16:57] 2026-04-29 11:16:57,883 [wrapper] ==== wrapper stdout END ====
[2026-04-29 13:16:57] 2026-04-29 11:16:57,886 [wrapper] ==== wrapper stderr END ====
[2026-04-29 13:16:57]  *** Error codes and diagnostics ***
[2026-04-29 13:16:57]     "exeErrorCode": 0,
[2026-04-29 13:16:57]     "pilotErrorCode": 0,
[2026-04-29 13:16:57]  *** Listing of results directory ***
[2026-04-29 13:16:57] total 472712
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc    683926 Apr 28 16:02 pilot3.tar.gz
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc      5631 Apr 28 17:06 queuedata.json
[2026-04-29 13:16:57] -rwx------. 1 boinc boinc     36322 Apr 28 17:06 runpilot2-wrapper.sh
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc       100 Apr 29 12:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 13:16:57] -rwxr-xr-x. 1 boinc boinc      7986 Apr 29 12:32 run_atlas
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc       105 Apr 29 12:32 job.xml
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc      6630 Apr 29 12:32 init_data.xml
[2026-04-29 13:16:57] -rw-r--r--. 2 boinc boinc 261816358 Apr 29 12:32 EVNT.49863712._000189.pool.root.1
[2026-04-29 13:16:57] -rw-r--r--. 2 boinc boinc     15667 Apr 29 12:32 start_atlas.sh
[2026-04-29 13:16:57] drwxrwx--x. 2 boinc boinc      4096 Apr 29 12:32 shared
[2026-04-29 13:16:57] -rw-r--r--. 2 boinc boinc    697419 Apr 29 12:32 input.tar.gz
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc         0 Apr 29 12:32 boinc_lockfile
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc      2572 Apr 29 12:32 pandaJob.out
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc   1001891 Apr 29 12:32 agis_schedconf.cvmfs.json
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc   1512704 Apr 29 12:32 agis_ddmendpoints.agis.ALL.json
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc       440 Apr 29 12:32 workernode_map.json
[2026-04-29 13:16:57] drwx------. 5 boinc boinc      4096 Apr 29 12:32 pilot3
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc       488 Apr 29 13:15 boinc_task_state.xml
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc 216862822 Apr 29 13:15 HITS.49863714._004680.pool.root.1
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc        95 Apr 29 13:15 pilot_heartbeat.json
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc      1028 Apr 29 13:15 memory_monitor_summary.json
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc    326177 Apr 29 13:16 log.49863714._004680.job.log.tgz.1
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc      6363 Apr 29 13:16 heartbeat_new.json
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc      6254 Apr 29 13:16 heartbeat.json
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc      8192 Apr 29 13:16 boinc_mmap_file
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc        27 Apr 29 13:16 wrapper_checkpoint.txt
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc      4833 Apr 29 13:16 pilotlog.txt
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc    288216 Apr 29 13:16 log.49863714._004680.job.log.1
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc       357 Apr 29 13:16 output.list
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc       410 Apr 29 13:16 runtime_log
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc    634880 Apr 29 13:16 result.tar.gz
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc      8846 Apr 29 13:16 runtime_log.err
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc       659 Apr 29 13:16 cd100769d7b0.diag
[2026-04-29 13:16:57] -rw-r--r--. 1 boinc boinc     20944 Apr 29 13:16 stderr.txt
[2026-04-29 13:16:57] HITS file was successfully produced:
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc 216862822 Apr 29 13:15 shared/HITS.pool.root.1
[2026-04-29 13:16:57]  *** Contents of shared directory: ***
[2026-04-29 13:16:57] total 468796
[2026-04-29 13:16:57] -rw-r--r--. 2 boinc boinc 261816358 Apr 29 12:32 ATLAS.root_0
[2026-04-29 13:16:57] -rw-r--r--. 2 boinc boinc     15667 Apr 29 12:32 start_atlas.sh
[2026-04-29 13:16:57] -rw-r--r--. 2 boinc boinc    697419 Apr 29 12:32 input.tar.gz
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc 216862822 Apr 29 13:15 HITS.pool.root.1
[2026-04-29 13:16:57] -rw-------. 1 boinc boinc    634880 Apr 29 13:16 result.tar.gz
13:16:59 (4177260): run_atlas exited; CPU time 27964.116281
13:16:59 (4177260): called boinc_finish(0)

</stderr_txt>
]]>

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