Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:02:59 (1035252): wrapper (7.7.26015): starting
23:02:59 (1035252): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 23:02:59] Arguments: --nthreads 4
[2026-04-28 23:02:59] Threads: 4
[2026-04-28 23:02:59] Checking for CVMFS
[2026-04-28 23:02:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 23:03:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 23:03:00] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 23:03:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 23:03:00] 2.9.2.0 567891 3244 90236 158980 0 50 35653894 36864001 0 130560 0 1821180 99.986 123188 7153 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-28 23:03:00] CVMFS is ok
[2026-04-28 23:03:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 23:03:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 23:03:00] Further information can be found at the LHC@home message board.
[2026-04-28 23:03:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 23:03:00] Checking for apptainer binary...
[2026-04-28 23:03:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 23:03:00] Running /usr/bin/apptainer --version
[2026-04-28 23:03:00] apptainer version 1.4.1-1.1
[2026-04-28 23:03:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 23:03:00] thA369a
[2026-04-28 23:03:00] apptainer works
[2026-04-28 23:03:00] Set ATHENA_PROC_NUMBER=4
[2026-04-28 23:03:00] Set ATHENA_CORE_NUMBER=4
[2026-04-28 23:03:00] Starting ATLAS job with PandaID=7116403355
[2026-04-28 23:03:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 00:44:23]  *** The last 200 lines of the pilot log: ***
[2026-04-29 00:44:23] 2026-04-28 22:43:41,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 00:44:23] 2026-04-28 22:43:41,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 00:44:23] 2026-04-28 22:43:41,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 00:44:23] 2026-04-28 22:43:41,922 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 00:44:23] 2026-04-28 22:43:41,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 00:44:23] 2026-04-28 22:43:41,922 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 00:44:23] 2026-04-28 22:43:41,923 | INFO     | job 7116403355 has completed (purged errors)
[2026-04-29 00:44:23] 2026-04-28 22:43:41,923 | INFO     | overall cleanup function is called
[2026-04-29 00:44:23] 2026-04-28 22:43:42,928 | INFO     | --- collectZombieJob: --- 10, [1043868]
[2026-04-29 00:44:23] 2026-04-28 22:43:42,928 | INFO     | zombie collector waiting for pid 1043868
[2026-04-29 00:44:23] 2026-04-28 22:43:42,928 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 00:44:23] 2026-04-28 22:43:42,928 | INFO     | collected zombie processes
[2026-04-29 00:44:23] 2026-04-28 22:43:42,928 | INFO     | will attempt to kill all subprocesses of pid=1043868
[2026-04-29 00:44:23] 2026-04-28 22:43:42,962 | INFO     | process IDs to be killed: [1043868] (in reverse order)
[2026-04-29 00:44:23] 2026-04-28 22:43:42,990 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 00:44:23] 2026-04-28 22:43:42,990 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 00:44:23] 2026-04-28 22:43:42,991 | INFO     | did not find any defunct processes belonging to 1043868
[2026-04-29 00:44:23] 2026-04-28 22:43:42,992 | INFO     | did not find any defunct processes belonging to 1043868
[2026-04-29 00:44:23] 2026-04-28 22:43:42,992 | INFO     | Ready for new job
[2026-04-29 00:44:23] 2026-04-28 22:43:42,993 | INFO     | ***************************************
[2026-04-29 00:44:23] 2026-04-28 22:43:42,993 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 00:44:23] 2026-04-28 22:43:42,993 | INFO     | ***************************************
[2026-04-29 00:44:23] 2026-04-28 22:43:42,993 | INFO     | 
[2026-04-29 00:44:23] 2026-04-28 22:43:42,993 | INFO     | architecture information:
[2026-04-29 00:44:23] 2026-04-28 22:43:42,994 | INFO     | executing command: cat /etc/os-release
[2026-04-29 00:44:23] 2026-04-28 22:43:43,004 | INFO     | cat /etc/os-release:
[2026-04-29 00:44:23] NAME="CentOS Linux"
[2026-04-29 00:44:23] VERSION="7 (Core)"
[2026-04-29 00:44:23] ID="centos"
[2026-04-29 00:44:23] ID_LIKE="rhel fedora"
[2026-04-29 00:44:23] VERSION_ID="7"
[2026-04-29 00:44:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 00:44:23] ANSI_COLOR="0;31"
[2026-04-29 00:44:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 00:44:23] HOME_URL="https://www.centos.org/"
[2026-04-29 00:44:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 00:44:23] 
[2026-04-29 00:44:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 00:44:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 00:44:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 00:44:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 00:44:23] 
[2026-04-29 00:44:23] 2026-04-28 22:43:43,004 | INFO     | ***************************************
[2026-04-29 00:44:23] 2026-04-28 22:43:43,507 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-29 00:44:23] 2026-04-28 22:43:43,521 | INFO     | sufficient remaining disk space (222697619456 B)
[2026-04-29 00:44:23] 2026-04-28 22:43:43,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 00:44:23] 2026-04-28 22:43:43,522 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 00:44:23] 2026-04-28 22:43:43,522 | INFO     | update_server=False
[2026-04-29 00:44:23] 2026-04-28 22:43:43,522 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 00:44:23] 2026-04-28 22:43:43,522 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 00:44:23] 2026-04-28 22:43:43,522 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 00:44:23] 2026-04-28 22:43:43,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 00:44:23] 2026-04-28 22:43:43,861 | INFO     | aborting loop
[2026-04-29 00:44:23] 2026-04-28 22:43:44,202 | INFO     | all job control threads have been joined
[2026-04-29 00:44:23] 2026-04-28 22:43:44,400 | INFO     | all data control threads have been joined
[2026-04-29 00:44:23] 2026-04-28 22:43:44,452 | INFO     | all payload control threads have been joined
[2026-04-29 00:44:23] 2026-04-28 22:43:44,528 | INFO     | [job] retrieve thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:44,528 | INFO     | [job] queue monitor thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:44,711 | INFO     | [data] copytool_in thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:44,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 00:44:23] 2026-04-28 22:43:44,867 | INFO     | [job] job monitor thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,034 | INFO     | [payload] failed_post thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,208 | INFO     | [job] control thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,402 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,406 | INFO     | [data] control thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,458 | INFO     | [payload] control thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,528 | INFO     | [data] copytool_out thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:45,956 | INFO     | [job] validate thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:46,023 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:46,025 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:46,040 | INFO     | [payload] validate_post thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:48,821 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:43:53,726 | INFO     | job.realtimelogging is not enabled
[2026-04-29 00:44:23] 2026-04-28 22:43:54,732 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 00:44:23] 2026-04-28 22:44:13,037 | INFO     | 6035s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-29 00:44:23] 2026-04-28 22:44:14,099 | INFO     | PID=1039356 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 00:44:23] 2026-04-28 22:44:14,100 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 00:44:23] 2026-04-28 22:44:14,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 00:44:23] 2026-04-28 22:44:14,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 00:44:23] 2026-04-28 22:44:18,378 | INFO     | [monitor] cgroup control has ended
[2026-04-29 00:44:23] 2026-04-28 22:44:18,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628909815616)>', '<ExcThread(monitor, started 140628293838592)>']
[2026-04-29 00:44:23] 2026-04-28 22:44:19,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 00:44:23] 2026-04-28 22:44:19,127 | INFO     | [monitor] control thread has ended
[2026-04-29 00:44:23] 2026-04-28 22:44:23,616 | INFO     | all workflow threads have been joined
[2026-04-29 00:44:23] 2026-04-28 22:44:23,617 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 00:44:23] 2026-04-28 22:44:23,618 | INFO     | traces error code: 0
[2026-04-29 00:44:23] 2026-04-28 22:44:23,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 00:44:23] 2026-04-28 22:44:23,673 [wrapper] ==== pilot stdout END ====
[2026-04-29 00:44:23] 2026-04-28 22:44:23,676 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 00:44:23] 2026-04-28 22:44:23,678 [wrapper] pilotpid: 1039356
[2026-04-29 00:44:23] 2026-04-28 22:44:23,681 [wrapper] Pilot exit status: 0
[2026-04-29 00:44:23] 2026-04-28 22:44:23,689 [wrapper] pandaids: 7116403355
[2026-04-29 00:44:23] 2026-04-28 22:44:23,707 [wrapper] cleanup supervisor_pilot 1049235 1039357
[2026-04-29 00:44:23] 2026-04-28 22:44:23,710 [wrapper] Test setup, not cleaning
[2026-04-29 00:44:23] 2026-04-28 22:44:23,713 [wrapper] apfmon messages muted
[2026-04-29 00:44:23] 2026-04-28 22:44:23,715 [wrapper] ==== wrapper stdout END ====
[2026-04-29 00:44:23] 2026-04-28 22:44:23,718 [wrapper] ==== wrapper stderr END ====
[2026-04-29 00:44:23]  *** Error codes and diagnostics ***
[2026-04-29 00:44:23]     "exeErrorCode": 0,
[2026-04-29 00:44:23]     "pilotErrorCode": 0,
[2026-04-29 00:44:23]  *** Listing of results directory ***
[2026-04-29 00:44:23] total 481548
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc    683926 Apr 28 12:25 pilot3.tar.gz
[2026-04-29 00:44:23] -rwx------ 1 boinc boinc     36322 Apr 28 12:25 runpilot2-wrapper.sh
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc      5631 Apr 28 12:46 queuedata.json
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc       100 Apr 28 23:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 00:44:23] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 23:02 run_atlas
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc       105 Apr 28 23:02 job.xml
[2026-04-29 00:44:23] -rw-r--r-- 2 boinc boinc 262515500 Apr 28 23:02 EVNT.49863712._000175.pool.root.1
[2026-04-29 00:44:23] -rw-r--r-- 2 boinc boinc    697417 Apr 28 23:02 input.tar.gz
[2026-04-29 00:44:23] -rw-r--r-- 2 boinc boinc     15667 Apr 28 23:02 start_atlas.sh
[2026-04-29 00:44:23] drwxrwx--x 2 boinc boinc      4096 Apr 28 23:02 shared
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc         0 Apr 28 23:02 boinc_setup_complete
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc      6358 Apr 28 23:02 init_data.xml
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc         0 Apr 28 23:02 boinc_lockfile
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc      2575 Apr 28 23:03 pandaJob.out
[2026-04-29 00:44:23] -rw------- 1 boinc boinc   1001831 Apr 28 23:03 agis_schedconf.cvmfs.json
[2026-04-29 00:44:23] -rw------- 1 boinc boinc   1512704 Apr 28 23:03 agis_ddmendpoints.agis.ALL.json
[2026-04-29 00:44:23] -rw------- 1 boinc boinc       424 Apr 28 23:03 workernode_map.json
[2026-04-29 00:44:23] drwx------ 5 boinc boinc      4096 Apr 28 23:03 pilot3
[2026-04-29 00:44:23] -rw------- 1 boinc boinc 224780757 Apr 29 00:43 HITS.49863714._004343.pool.root.1
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc       487 Apr 29 00:43 boinc_task_state.xml
[2026-04-29 00:44:23] -rw------- 1 boinc boinc      1015 Apr 29 00:43 memory_monitor_summary.json
[2026-04-29 00:44:23] -rw------- 1 boinc boinc    257093 Apr 29 00:43 log.49863714._004343.job.log.tgz.1
[2026-04-29 00:44:23] -rw------- 1 boinc boinc        95 Apr 29 00:43 pilot_heartbeat.json
[2026-04-29 00:44:23] -rw------- 1 boinc boinc      6318 Apr 29 00:43 heartbeat_new.json
[2026-04-29 00:44:23] -rw------- 1 boinc boinc      6209 Apr 29 00:43 heartbeat.json
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc      8192 Apr 29 00:44 boinc_mmap_file
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc        27 Apr 29 00:44 wrapper_checkpoint.txt
[2026-04-29 00:44:23] -rw------- 1 boinc boinc      4938 Apr 29 00:44 pilotlog.txt
[2026-04-29 00:44:23] -rw------- 1 boinc boinc    580987 Apr 29 00:44 log.49863714._004343.job.log.1
[2026-04-29 00:44:23] -rw------- 1 boinc boinc       357 Apr 29 00:44 output.list
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc       410 Apr 29 00:44 runtime_log
[2026-04-29 00:44:23] -rw------- 1 boinc boinc    860160 Apr 29 00:44 result.tar.gz
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc      8524 Apr 29 00:44 runtime_log.err
[2026-04-29 00:44:23] -rw------- 1 boinc boinc       658 Apr 29 00:44 8b1005d0e373.diag
[2026-04-29 00:44:23] -rw-r--r-- 1 boinc boinc     11432 Apr 29 00:44 stderr.txt
[2026-04-29 00:44:23] HITS file was successfully produced:
[2026-04-29 00:44:23] -rw------- 1 boinc boinc 224780757 Apr 29 00:43 shared/HITS.pool.root.1
[2026-04-29 00:44:23]  *** Contents of shared directory: ***
[2026-04-29 00:44:23] total 477428
[2026-04-29 00:44:23] -rw-r--r-- 2 boinc boinc 262515500 Apr 28 23:02 ATLAS.root_0
[2026-04-29 00:44:23] -rw-r--r-- 2 boinc boinc    697417 Apr 28 23:02 input.tar.gz
[2026-04-29 00:44:23] -rw-r--r-- 2 boinc boinc     15667 Apr 28 23:02 start_atlas.sh
[2026-04-29 00:44:23] -rw------- 1 boinc boinc 224780757 Apr 29 00:43 HITS.pool.root.1
[2026-04-29 00:44:23] -rw------- 1 boinc boinc    860160 Apr 29 00:44 result.tar.gz
00:44:25 (1035252): run_atlas exited; CPU time 22098.606338
00:44:25 (1035252): called boinc_finish(0)

</stderr_txt>
]]>

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