Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:32:26 (2434905): wrapper (7.7.26015): starting
04:32:26 (2434905): wrapper: running run_atlas (--nthreads 12)
[2026-04-29 04:32:26] Arguments: --nthreads 12
[2026-04-29 04:32:26] Threads: 12
[2026-04-29 04:32:26] Checking for CVMFS
[2026-04-29 04:32:26] No cvmfs_config command found, will try listing directly
[2026-04-29 04:32:26] CVMFS is ok
[2026-04-29 04:32:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 04:32:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-29 04:32:26] Further information can be found at the LHC@home message board.
[2026-04-29 04:32:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 04:32:26] Checking for apptainer binary...
[2026-04-29 04:32:26] which: no apptainer in ((null))
[2026-04-29 04:32:26] apptainer is not installed, using version from CVMFS
[2026-04-29 04:32:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 04:32:26] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/15/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-04-29 04:32:26] apptainer works
[2026-04-29 04:32:26] Set ATHENA_PROC_NUMBER=12
[2026-04-29 04:32:26] Set ATHENA_CORE_NUMBER=12
[2026-04-29 04:32:26] Starting ATLAS job with PandaID=7116402432
[2026-04-29 04:32:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 05:26:49]  *** The last 200 lines of the pilot log: ***
[2026-04-29 05:26:49]  domain=
[2026-04-29 05:26:49]  filesize=512052
[2026-04-29 05:26:49]  filetype=log
[2026-04-29 05:26:49]  guid=34f983a9-1205-462f-902f-10a939480fcb
[2026-04-29 05:26:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-29 05:26:49]  is_altstaged=None
[2026-04-29 05:26:49]  is_tar=False
[2026-04-29 05:26:49]  lfn=log.49820375._019708.job.log.tgz.1
[2026-04-29 05:26:49]  mtime=0
[2026-04-29 05:26:49]  protocol_id=None
[2026-04-29 05:26:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-29 05:26:49]  replicas=None
[2026-04-29 05:26:49]  scope=mc23_13p6TeV
[2026-04-29 05:26:49]  status=None
[2026-04-29 05:26:49]  status_code=0
[2026-04-29 05:26:49]  storage_token=
[2026-04-29 05:26:49]  surl=/var/lib/boinc/var/slot84/slots/15/PanDA_Pilot-7116402432/log.49820375._019708.job.log.tgz.1
[2026-04-29 05:26:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/b8/log.49820375._019708.job.log.tgz.1
[2026-04-29 05:26:49]  workdir=None
[2026-04-29 05:26:49] ]
[2026-04-29 05:26:49] 2026-04-29 03:25:45,760 | INFO     | monitor loop #238: job 0:7116402432 is in state 'stageout'
[2026-04-29 05:26:49] 2026-04-29 03:25:45,766 | WARNING  | aborting job monitor tasks since payload process 2445330 is not running
[2026-04-29 05:26:49] 2026-04-29 03:25:45,776 | INFO     | transferring file log.49820375._019708.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/15/PanDA_Pilot-7116402432/log.49820375._019708.job.log.tgz.1 to /var/lib/
[2026-04-29 05:26:49] 2026-04-29 03:25:45,776 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/15/PanDA_Pilot-7116402432/log.49820375._019708.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/15/
[2026-04-29 05:26:49] 2026-04-29 03:25:45,793 | INFO     | adding to output.list: log.49820375._019708.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/b8/log.49820375._019708.job.log.tg
[2026-04-29 05:26:49] 2026-04-29 03:25:45,793 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 05:26:49] 2026-04-29 03:25:45,793 | INFO     | summary of transferred files:
[2026-04-29 05:26:49] 2026-04-29 03:25:45,793 | INFO     |  -- lfn=log.49820375._019708.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 05:26:49] 2026-04-29 03:25:45,793 | INFO     | stage-out finished correctly
[2026-04-29 05:26:49] 2026-04-29 03:25:45,846 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 05:26:49] 2026-04-29 03:25:46,122 | INFO     | PID=2439457 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-29 05:26:49] 2026-04-29 03:25:46,122 | INFO     | .. there are 16 such processes running
[2026-04-29 05:26:49] 2026-04-29 03:25:46,586 | INFO     | job 7116402432 has state=finished
[2026-04-29 05:26:49] 2026-04-29 03:25:46,586 | INFO     | preparing for final server update for job 7116402432 in state='finished'
[2026-04-29 05:26:49] 2026-04-29 03:25:46,587 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/15/PanDA_Pilot-7116402432/jobReport.json
[2026-04-29 05:26:49] 2026-04-29 03:25:46,588 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/15/workernode_map.json
[2026-04-29 05:26:49] 2026-04-29 03:25:46,588 | INFO     | this job has now completed (state=finished)
[2026-04-29 05:26:49] 2026-04-29 03:25:46,589 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 05:26:49] 2026-04-29 03:25:46,589 | INFO     | log transfer has been attempted: DONE
[2026-04-29 05:26:49] 2026-04-29 03:25:46,589 | INFO     | job 7116402432 has finished - writing final server update
[2026-04-29 05:26:49] 2026-04-29 03:25:46,589 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1174383/.job.ad'
[2026-04-29 05:26:49] 2026-04-29 03:25:46,589 | INFO     | total number of processed events: 400 (read)
[2026-04-29 05:26:49] 2026-04-29 03:25:46,607 | INFO     | using path: /var/lib/boinc/var/slot84/slots/15/PanDA_Pilot-7116402432/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 05:26:49] 2026-04-29 03:25:46,607 | INFO     | extracted standard info from prmon json
[2026-04-29 05:26:49] 2026-04-29 03:25:46,607 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 05:26:49] 2026-04-29 03:25:46,607 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 05:26:49] 2026-04-29 03:25:46,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | fitting pss+swap vs Time
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | sum of square deviations: 28242390.0
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | sum of deviations: 165308413.99999997
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | mean x (centered): 0.0
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | mean y: 2784923.511111111
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | intersect: 2784923.511111111
[2026-04-29 05:26:49] 2026-04-29 03:25:46,608 | INFO     | chi2: 0.0011966163113729198
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | current memory leak: 5.85 B/s (using 45 data points, chi2=0.00)
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | could have reported an average CPU frequency of 3568 MHz (5 samples)
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | ..............................
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . Timing measurements:
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . get job = 0 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . initial setup = 4 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . payload setup = 6 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . stage-in = 0 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . payload execution = 3165 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . stage-out = 0 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | . log creation = 0 s
[2026-04-29 05:26:49] 2026-04-29 03:25:46,609 | INFO     | ..............................
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | 
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | job summary report
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | --------------------------------------------------
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | PanDA job id: 7116402432
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | task id: 49820375
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | errors: (none)
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | pilot state: finished 
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | transexitcode: 0
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | exeerrorcode: 0
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | exeerrordiag: 
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | exitcode: 0
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | exitmsg: OK
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | cpuconsumptiontime: 34429 s
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | nevents: 400
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | neventsw: 0
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | pid: 2445330
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | pgrp: 2445330
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | corecount: 12
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | event service: False
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | sizes: {0: 2280727, 1: 2282556, 11: 2282556, 3176: 2308048, 3177: 2317296}
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | --------------------------------------------------
[2026-04-29 05:26:49] 2026-04-29 03:25:47,042 | INFO     | 
[2026-04-29 05:26:49] 2026-04-29 03:25:47,043 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/15
[2026-04-29 05:26:49] 2026-04-29 03:25:47,062 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,062 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,062 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,062 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | job 7116402432 has completed (purged errors)
[2026-04-29 05:26:49] 2026-04-29 03:25:47,063 | INFO     | overall cleanup function is called
[2026-04-29 05:26:49] 2026-04-29 03:25:48,071 | INFO     | --- collectZombieJob: --- 10, [2445330]
[2026-04-29 05:26:49] 2026-04-29 03:25:48,071 | INFO     | zombie collector waiting for pid 2445330
[2026-04-29 05:26:49] 2026-04-29 03:25:48,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 05:26:49] 2026-04-29 03:25:48,071 | INFO     | collected zombie processes
[2026-04-29 05:26:49] 2026-04-29 03:25:48,071 | INFO     | will attempt to kill all subprocesses of pid=2445330
[2026-04-29 05:26:49] 2026-04-29 03:25:48,386 | INFO     | process IDs to be killed: [2445330] (in reverse order)
[2026-04-29 05:26:49] 2026-04-29 03:25:48,542 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 05:26:49] 2026-04-29 03:25:48,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 05:26:49] 2026-04-29 03:25:48,566 | INFO     | did not find any defunct processes belonging to 2445330
[2026-04-29 05:26:49] 2026-04-29 03:25:48,588 | INFO     | did not find any defunct processes belonging to 2445330
[2026-04-29 05:26:49] 2026-04-29 03:25:48,589 | INFO     | Ready for new job
[2026-04-29 05:26:49] 2026-04-29 03:25:48,590 | INFO     | ***************************************
[2026-04-29 05:26:49] 2026-04-29 03:25:48,590 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 05:26:49] 2026-04-29 03:25:48,590 | INFO     | ***************************************
[2026-04-29 05:26:49] 2026-04-29 03:25:48,590 | INFO     | 
[2026-04-29 05:26:49] 2026-04-29 03:25:48,595 | INFO     | architecture information:
[2026-04-29 05:26:49] 2026-04-29 03:25:48,596 | INFO     | executing command: cat /etc/os-release
[2026-04-29 05:26:49] 2026-04-29 03:25:48,611 | INFO     | cat /etc/os-release:
[2026-04-29 05:26:49] NAME="CentOS Linux"
[2026-04-29 05:26:49] VERSION="7 (Core)"
[2026-04-29 05:26:49] ID="centos"
[2026-04-29 05:26:49] ID_LIKE="rhel fedora"
[2026-04-29 05:26:49] VERSION_ID="7"
[2026-04-29 05:26:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 05:26:49] ANSI_COLOR="0;31"
[2026-04-29 05:26:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 05:26:49] HOME_URL="https://www.centos.org/"
[2026-04-29 05:26:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 05:26:49] 
[2026-04-29 05:26:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 05:26:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 05:26:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 05:26:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 05:26:49] 
[2026-04-29 05:26:49] 2026-04-29 03:25:48,611 | INFO     | ***************************************
[2026-04-29 05:26:49] 2026-04-29 03:25:49,113 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/15
[2026-04-29 05:26:49] 2026-04-29 03:25:49,137 | INFO     | sufficient remaining disk space (22205693952 B)
[2026-04-29 05:26:49] 2026-04-29 03:25:49,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 05:26:49] 2026-04-29 03:25:49,138 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 05:26:49] 2026-04-29 03:25:49,138 | INFO     | update_server=False
[2026-04-29 05:26:49] 2026-04-29 03:25:49,138 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 05:26:49] 2026-04-29 03:25:49,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 05:26:49] 2026-04-29 03:25:49,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 05:26:49] 2026-04-29 03:25:49,290 | INFO     | aborting loop
[2026-04-29 05:26:49] 2026-04-29 03:25:49,667 | INFO     | all payload control threads have been joined
[2026-04-29 05:26:49] 2026-04-29 03:25:49,952 | INFO     | all job control threads have been joined
[2026-04-29 05:26:49] 2026-04-29 03:25:50,143 | INFO     | [job] retrieve thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:50,160 | INFO     | all data control threads have been joined
[2026-04-29 05:26:49] 2026-04-29 03:25:50,295 | INFO     | [job] job monitor thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:50,584 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:50,672 | INFO     | [payload] control thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:50,835 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:50,934 | INFO     | [payload] validate_post thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:50,957 | INFO     | [job] control thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,144 | INFO     | [data] copytool_out thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,166 | INFO     | [data] control thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,240 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,240 | INFO     | [job] validate thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,276 | INFO     | [payload] failed_post thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,456 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,507 | INFO     | [data] copytool_in thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:51,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 05:26:49] 2026-04-29 03:25:51,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 05:26:49] 2026-04-29 03:25:52,677 | INFO     | [job] queue monitor thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:25:55,907 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 05:26:49] 2026-04-29 03:26:18,651 | INFO     | PID=2439457 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 05:26:49] 2026-04-29 03:26:18,651 | INFO     | .. there are 16 such processes running
[2026-04-29 05:26:49] 2026-04-29 03:26:18,651 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 05:26:49] 2026-04-29 03:26:18,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 05:26:49] 2026-04-29 03:26:18,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 05:26:49] 2026-04-29 03:26:43,355 | INFO     | [monitor] cgroup control has ended
[2026-04-29 05:26:49] 2026-04-29 03:26:44,284 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23265529952064)>', '<ExcThread(monitor, started 23265221252864)>']
[2026-04-29 05:26:49] 2026-04-29 03:26:44,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 05:26:49] 2026-04-29 03:26:44,782 | INFO     | [monitor] control thread has ended
[2026-04-29 05:26:49] 2026-04-29 03:26:49,309 | INFO     | all workflow threads have been joined
[2026-04-29 05:26:49] 2026-04-29 03:26:49,309 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 05:26:49] 2026-04-29 03:26:49,309 | INFO     | traces error code: 0
[2026-04-29 05:26:49] 2026-04-29 03:26:49,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 05:26:49] 2026-04-29 03:26:49,460 [wrapper] ==== pilot stdout END ====
[2026-04-29 05:26:49] 2026-04-29 03:26:49,463 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 05:26:49] 2026-04-29 03:26:49,465 [wrapper] pilotpid: 2439457
[2026-04-29 05:26:49] 2026-04-29 03:26:49,466 [wrapper] Pilot exit status: 0
[2026-04-29 05:26:49] 2026-04-29 03:26:49,475 [wrapper] pandaids: 7116402432
[2026-04-29 05:26:49] 2026-04-29 03:26:49,582 [wrapper] cleanup supervisor_pilot 2762864 2439458
[2026-04-29 05:26:49] 2026-04-29 03:26:49,585 [wrapper] Test setup, not cleaning
[2026-04-29 05:26:49] 2026-04-29 03:26:49,587 [wrapper] apfmon messages muted
[2026-04-29 05:26:49] 2026-04-29 03:26:49,589 [wrapper] ==== wrapper stdout END ====
[2026-04-29 05:26:49] 2026-04-29 03:26:49,590 [wrapper] ==== wrapper stderr END ====
[2026-04-29 05:26:49]  *** Error codes and diagnostics ***
[2026-04-29 05:26:49]     "exeErrorCode": 0,
[2026-04-29 05:26:49]     "pilotErrorCode": 0,
[2026-04-29 05:26:49]  *** Listing of results directory ***
[2026-04-29 05:26:49] total 2458236
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc     683926 Apr 28 09:39 pilot3.tar.gz
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc       5631 Apr 28 09:56 queuedata.json
[2026-04-29 05:26:49] -rwx------. 1 boinc boinc      36322 Apr 28 09:56 runpilot2-wrapper.sh
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc        100 Apr 29 04:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 05:26:49] -rwxr-xr-x. 1 boinc boinc       7986 Apr 29 04:32 run_atlas
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc        105 Apr 29 04:32 job.xml
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc       6629 Apr 29 04:32 init_data.xml
[2026-04-29 05:26:49] -rw-r--r--. 2 boinc boinc 2234700770 Apr 29 04:32 EVNT.49820373._000067.pool.root.1
[2026-04-29 05:26:49] -rw-r--r--. 2 boinc boinc      15667 Apr 29 04:32 start_atlas.sh
[2026-04-29 05:26:49] drwxrwx--x. 2 boinc boinc       4096 Apr 29 04:32 shared
[2026-04-29 05:26:49] -rw-r--r--. 2 boinc boinc     697421 Apr 29 04:32 input.tar.gz
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc          0 Apr 29 04:32 boinc_lockfile
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc       2586 Apr 29 04:32 pandaJob.out
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc    1001138 Apr 29 04:32 agis_schedconf.cvmfs.json
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc    1512704 Apr 29 04:32 agis_ddmendpoints.agis.ALL.json
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc        443 Apr 29 04:32 workernode_map.json
[2026-04-29 05:26:49] drwx------. 5 boinc boinc       4096 Apr 29 04:32 pilot3
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc  276683371 Apr 29 05:25 HITS.49820375._019708.pool.root.1
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc        488 Apr 29 05:25 boinc_task_state.xml
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc         95 Apr 29 05:25 pilot_heartbeat.json
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc       1031 Apr 29 05:25 memory_monitor_summary.json
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc     512052 Apr 29 05:25 log.49820375._019708.job.log.tgz.1
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc       6372 Apr 29 05:25 heartbeat_new.json
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc       6263 Apr 29 05:25 heartbeat.json
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc       8192 Apr 29 05:26 boinc_mmap_file
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc         27 Apr 29 05:26 wrapper_checkpoint.txt
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc       4833 Apr 29 05:26 pilotlog.txt
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc     339289 Apr 29 05:26 log.49820375._019708.job.log.1
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc        357 Apr 29 05:26 output.list
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc        410 Apr 29 05:26 runtime_log
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc     870400 Apr 29 05:26 result.tar.gz
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc       8846 Apr 29 05:26 runtime_log.err
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc        663 Apr 29 05:26 6830974e4b6c.diag
[2026-04-29 05:26:49] -rw-r--r--. 1 boinc boinc      21000 Apr 29 05:26 stderr.txt
[2026-04-29 05:26:49] HITS file was successfully produced:
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc 276683371 Apr 29 05:25 shared/HITS.pool.root.1
[2026-04-29 05:26:49]  *** Contents of shared directory: ***
[2026-04-29 05:26:49] total 2454088
[2026-04-29 05:26:49] -rw-r--r--. 2 boinc boinc 2234700770 Apr 29 04:32 ATLAS.root_0
[2026-04-29 05:26:49] -rw-r--r--. 2 boinc boinc      15667 Apr 29 04:32 start_atlas.sh
[2026-04-29 05:26:49] -rw-r--r--. 2 boinc boinc     697421 Apr 29 04:32 input.tar.gz
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc  276683371 Apr 29 05:25 HITS.pool.root.1
[2026-04-29 05:26:49] -rw-------. 1 boinc boinc     870400 Apr 29 05:26 result.tar.gz
05:26:50 (2434905): run_atlas exited; CPU time 34523.067091
05:26:50 (2434905): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN