Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:04:26 (22643): wrapper (7.7.26015): starting
23:04:26 (22643): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 23:04:26] Arguments: --nthreads 8
[2026-04-28 23:04:26] Threads: 8
[2026-04-28 23:04:26] Checking for CVMFS
[2026-04-28 23:04:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 23:04:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 23:04:30] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 23:04:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 23:04:31] 2.11.2.0 19079 18975 101064 158980 0 54 19197346 25165824 96 130560 0 8733715 99.899 3761619 6655 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 23:04:31] CVMFS is ok
[2026-04-28 23:04:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 23:04:31] Checking for apptainer binary...
[2026-04-28 23:04:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 23:04:32] Running /usr/bin/apptainer --version
[2026-04-28 23:04:32] apptainer version 1.3.2-1.el7
[2026-04-28 23:04:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 23:04:54] cg-vwn478.simple-grid.lan
[2026-04-28 23:04:54] apptainer works
[2026-04-28 23:04:54] Set ATHENA_PROC_NUMBER=8
[2026-04-28 23:04:54] Set ATHENA_CORE_NUMBER=8
[2026-04-28 23:04:54] Starting ATLAS job with PandaID=7116402075
[2026-04-28 23:04:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 04:56:50]  *** The last 200 lines of the pilot log: ***
[2026-04-29 04:56:50] 2026-04-29 02:55:37,417 | INFO     | log transfer has been attempted: DONE
[2026-04-29 04:56:50] 2026-04-29 02:55:37,417 | INFO     | job 7116402075 has finished - writing final server update
[2026-04-29 04:56:50] 2026-04-29 02:55:37,418 | INFO     | total number of processed events: 400 (read)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,419 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7116402075/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,420 | INFO     | extracted standard info from prmon json
[2026-04-29 04:56:50] 2026-04-29 02:55:37,420 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 04:56:50] 2026-04-29 02:55:37,420 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 04:56:50] 2026-04-29 02:55:37,421 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 04:56:50] 2026-04-29 02:55:37,427 | INFO     | fitting pss+swap vs Time
[2026-04-29 04:56:50] 2026-04-29 02:55:37,427 | INFO     | sum of square deviations: 11553509647.5
[2026-04-29 04:56:50] 2026-04-29 02:55:37,431 | INFO     | sum of deviations: 143224750804.49997
[2026-04-29 04:56:50] 2026-04-29 02:55:37,431 | INFO     | mean x (centered): 0.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,431 | INFO     | mean y: 2483622.482035928
[2026-04-29 04:56:50] 2026-04-29 02:55:37,431 | INFO     | intersect: 2483622.482035928
[2026-04-29 04:56:50] 2026-04-29 02:55:37,432 | INFO     | chi2: 9.63740294426691
[2026-04-29 04:56:50] 2026-04-29 02:55:37,432 | INFO     | sum of square deviations: 11042365180.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,436 | INFO     | sum of deviations: 163529673519.99994
[2026-04-29 04:56:50] 2026-04-29 02:55:37,436 | INFO     | mean x (centered): 0.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,436 | INFO     | mean y: 2489599.161094225
[2026-04-29 04:56:50] 2026-04-29 02:55:37,436 | INFO     | intersect: 2489599.161094225
[2026-04-29 04:56:50] 2026-04-29 02:55:37,437 | INFO     | chi2: 8.93546714425193
[2026-04-29 04:56:50] 2026-04-29 02:55:37,437 | INFO     | current chi2=8.93546714425193 (change=7.283453893899355 %)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,437 | INFO     | right removable region: 328
[2026-04-29 04:56:50] 2026-04-29 02:55:37,437 | INFO     | sum of square deviations: 11042365180.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,441 | INFO     | sum of deviations: 18645537427.999973
[2026-04-29 04:56:50] 2026-04-29 02:55:37,441 | INFO     | mean x (centered): 0.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,441 | INFO     | mean y: 2520787.838905775
[2026-04-29 04:56:50] 2026-04-29 02:55:37,441 | INFO     | intersect: 2520787.838905775
[2026-04-29 04:56:50] 2026-04-29 02:55:37,441 | INFO     | chi2: 4.163657243464953
[2026-04-29 04:56:50] 2026-04-29 02:55:37,442 | INFO     | current chi2=4.163657243464953 (change=56.796895724466665 %)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,442 | INFO     | sum of square deviations: 10546523325.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,445 | INFO     | sum of deviations: -75134939459.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,445 | INFO     | mean x (centered): 0.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,446 | INFO     | mean y: 2549603.9197530863
[2026-04-29 04:56:50] 2026-04-29 02:55:37,446 | INFO     | intersect: 2549603.9197530863
[2026-04-29 04:56:50] 2026-04-29 02:55:37,446 | INFO     | chi2: 1.2205224356623257
[2026-04-29 04:56:50] 2026-04-29 02:55:37,446 | INFO     | current chi2=1.2205224356623257 (change=70.68628937749402 %)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,447 | INFO     | sum of square deviations: 10065751520.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,450 | INFO     | sum of deviations: -93832506532.00002
[2026-04-29 04:56:50] 2026-04-29 02:55:37,450 | INFO     | mean x (centered): 0.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,450 | INFO     | mean y: 2555500.868338558
[2026-04-29 04:56:50] 2026-04-29 02:55:37,450 | INFO     | intersect: 2555500.868338558
[2026-04-29 04:56:50] 2026-04-29 02:55:37,451 | INFO     | chi2: 1.0203299307834097
[2026-04-29 04:56:50] 2026-04-29 02:55:37,451 | INFO     | current chi2=1.0203299307834097 (change=16.402197864579193 %)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,451 | INFO     | left removable region: 15
[2026-04-29 04:56:50] 2026-04-29 02:55:37,452 | INFO     | sum of square deviations: 9508390372.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,455 | INFO     | sum of deviations: -70705754164.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,455 | INFO     | mean x (centered): 0.0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,455 | INFO     | mean y: 2562982.5846645366
[2026-04-29 04:56:50] 2026-04-29 02:55:37,455 | INFO     | intersect: 2562982.5846645366
[2026-04-29 04:56:50] 2026-04-29 02:55:37,456 | INFO     | chi2: 0.23269349209546283
[2026-04-29 04:56:50] 2026-04-29 02:55:37,456 | INFO     | current memory leak: -7.44 B/s (using 313 data points, chi2=0.23)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,456 | INFO     | could have reported an average CPU frequency of 2249 MHz (15 samples)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | ..............................
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | . Timing measurements:
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | . get job = 0 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | . initial setup = 117 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | . payload setup = 169 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | . stage-in = 0 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,457 | INFO     | . payload execution = 20477 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,458 | INFO     | . stage-out = 3 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,458 | INFO     | . log creation = 1 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,458 | INFO     | ..............................
[2026-04-29 04:56:50] 2026-04-29 02:55:37,589 | INFO     | 
[2026-04-29 04:56:50] 2026-04-29 02:55:37,589 | INFO     | job summary report
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | --------------------------------------------------
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | PanDA job id: 7116402075
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | task id: 49863714
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | errors: (none)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | pilot state: finished 
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | transexitcode: 0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | exeerrorcode: 0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | exeerrordiag: 
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | exitcode: 0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | exitmsg: OK
[2026-04-29 04:56:50] 2026-04-29 02:55:37,590 | INFO     | cpuconsumptiontime: 78410 s
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | nevents: 400
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | neventsw: 0
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | pid: 31066
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | pgrp: 31066
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | corecount: 8
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | event service: False
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | sizes: {0: 2280004, 1: 2280689, 2: 2282518, 12: 2282518, 20652: 2316178, 20657: 2325176, 20660: 2325554}
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | --------------------------------------------------
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | 
[2026-04-29 04:56:50] 2026-04-29 02:55:37,591 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-04-29 04:56:50] 2026-04-29 02:55:37,827 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,828 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,828 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,828 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,828 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,828 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,828 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,829 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,830 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,830 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,830 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,830 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 04:56:50] 2026-04-29 02:55:37,830 | INFO     | job 7116402075 has completed (purged errors)
[2026-04-29 04:56:50] 2026-04-29 02:55:37,830 | INFO     | overall cleanup function is called
[2026-04-29 04:56:50] 2026-04-29 02:55:38,838 | INFO     | --- collectZombieJob: --- 10, [31066]
[2026-04-29 04:56:50] 2026-04-29 02:55:38,839 | INFO     | zombie collector waiting for pid 31066
[2026-04-29 04:56:50] 2026-04-29 02:55:38,839 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 04:56:50] 2026-04-29 02:55:38,839 | INFO     | collected zombie processes
[2026-04-29 04:56:50] 2026-04-29 02:55:38,839 | INFO     | will attempt to kill all subprocesses of pid=31066
[2026-04-29 04:56:50] 2026-04-29 02:55:38,901 | INFO     | process IDs to be killed: [31066] (in reverse order)
[2026-04-29 04:56:50] 2026-04-29 02:55:39,853 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 04:56:50] 2026-04-29 02:55:39,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 04:56:50] 2026-04-29 02:55:39,855 | INFO     | did not find any defunct processes belonging to 31066
[2026-04-29 04:56:50] 2026-04-29 02:55:39,857 | INFO     | did not find any defunct processes belonging to 31066
[2026-04-29 04:56:50] 2026-04-29 02:55:39,857 | INFO     | Ready for new job
[2026-04-29 04:56:50] 2026-04-29 02:55:39,859 | INFO     | ***************************************
[2026-04-29 04:56:50] 2026-04-29 02:55:39,859 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 04:56:50] 2026-04-29 02:55:39,859 | INFO     | ***************************************
[2026-04-29 04:56:50] 2026-04-29 02:55:39,860 | INFO     | 
[2026-04-29 04:56:50] 2026-04-29 02:55:39,860 | INFO     | pilot is running in a VM
[2026-04-29 04:56:50] 2026-04-29 02:55:39,860 | INFO     | architecture information:
[2026-04-29 04:56:50] 2026-04-29 02:55:39,864 | INFO     | executing command: cat /etc/os-release
[2026-04-29 04:56:50] 2026-04-29 02:55:40,193 | INFO     | cat /etc/os-release:
[2026-04-29 04:56:50] NAME="CentOS Linux"
[2026-04-29 04:56:50] VERSION="7 (Core)"
[2026-04-29 04:56:50] ID="centos"
[2026-04-29 04:56:50] ID_LIKE="rhel fedora"
[2026-04-29 04:56:50] VERSION_ID="7"
[2026-04-29 04:56:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 04:56:50] ANSI_COLOR="0;31"
[2026-04-29 04:56:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 04:56:50] HOME_URL="https://www.centos.org/"
[2026-04-29 04:56:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 04:56:50] 
[2026-04-29 04:56:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 04:56:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 04:56:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 04:56:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 04:56:50] 
[2026-04-29 04:56:50] 2026-04-29 02:55:40,193 | INFO     | ***************************************
[2026-04-29 04:56:50] 2026-04-29 02:55:40,697 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-04-29 04:56:50] 2026-04-29 02:55:40,973 | INFO     | sufficient remaining disk space (494165557248 B)
[2026-04-29 04:56:50] 2026-04-29 02:55:40,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 04:56:50] 2026-04-29 02:55:40,974 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 04:56:50] 2026-04-29 02:55:40,974 | INFO     | update_server=False
[2026-04-29 04:56:50] 2026-04-29 02:55:40,974 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 04:56:50] 2026-04-29 02:55:40,975 | INFO     | all job control threads have been joined
[2026-04-29 04:56:50] 2026-04-29 02:55:41,280 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-29 04:56:50] 2026-04-29 02:55:41,281 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-29 04:56:50] 2026-04-29 02:55:41,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 04:56:50] 2026-04-29 02:55:41,281 | INFO     | will abort loop
[2026-04-29 04:56:50] 2026-04-29 02:55:41,517 | INFO     | all data control threads have been joined
[2026-04-29 04:56:50] 2026-04-29 02:55:41,735 | INFO     | all payload control threads have been joined
[2026-04-29 04:56:50] 2026-04-29 02:55:41,980 | INFO     | [job] retrieve thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:41,981 | INFO     | [job] control thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:41,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 04:56:50] 2026-04-29 02:55:42,091 | INFO     | [data] copytool_in thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,277 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,287 | INFO     | [job] job monitor thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,508 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,524 | INFO     | [data] control thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,531 | INFO     | [payload] failed_post thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 04:56:50] 2026-04-29 02:55:42,742 | INFO     | [payload] control thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,751 | INFO     | [job] validate thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:42,887 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:43,077 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:43,136 | INFO     | [payload] validate_post thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:43,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 04:56:50] 2026-04-29 02:55:43,610 | INFO     | [job] queue monitor thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:44,001 | INFO     | [data] copytool_out thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:55:47,436 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 04:56:50] 2026-04-29 02:56:10,506 | INFO     | PID=26618 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-29 04:56:50] 2026-04-29 02:56:10,506 | INFO     | .. there are 2 such processes running
[2026-04-29 04:56:50] 2026-04-29 02:56:10,514 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 04:56:50] 2026-04-29 02:56:10,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 04:56:50] 2026-04-29 02:56:10,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 04:56:50] 2026-04-29 02:56:40,240 | INFO     | [monitor] cgroup control has ended
[2026-04-29 04:56:50] 2026-04-29 02:56:40,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140654350538560)>', '<ExcThread(monitor, started 140653778421504)>']
[2026-04-29 04:56:50] 2026-04-29 02:56:40,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 04:56:50] 2026-04-29 02:56:40,694 | INFO     | [monitor] control thread has ended
[2026-04-29 04:56:50] 2026-04-29 02:56:45,511 | INFO     | all workflow threads have been joined
[2026-04-29 04:56:50] 2026-04-29 02:56:45,512 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 04:56:50] 2026-04-29 02:56:45,512 | INFO     | traces error code: 0
[2026-04-29 04:56:50] 2026-04-29 02:56:45,512 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 04:56:50] 2026-04-29 02:56:45,908 [wrapper] ==== pilot stdout END ====
[2026-04-29 04:56:50] 2026-04-29 02:56:46,047 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 04:56:50] 2026-04-29 02:56:46,113 [wrapper] pilotpid: 26618
[2026-04-29 04:56:50] 2026-04-29 02:56:46,220 [wrapper] Pilot exit status: 0
[2026-04-29 04:56:50] 2026-04-29 02:56:46,717 [wrapper] pandaids: 7116402075
[2026-04-29 04:56:50] 2026-04-29 02:56:47,781 [wrapper] cleanup supervisor_pilot  6842 26619
[2026-04-29 04:56:50] 2026-04-29 02:56:47,895 [wrapper] Test setup, not cleaning
[2026-04-29 04:56:50] 2026-04-29 02:56:47,997 [wrapper] apfmon messages muted
[2026-04-29 04:56:50] 2026-04-29 02:56:48,087 [wrapper] ==== wrapper stdout END ====
[2026-04-29 04:56:50] 2026-04-29 02:56:48,189 [wrapper] ==== wrapper stderr END ====
[2026-04-29 04:56:50]  *** Error codes and diagnostics ***
[2026-04-29 04:56:50]     "exeErrorCode": 0,
[2026-04-29 04:56:50]     "pilotErrorCode": 0,
[2026-04-29 04:56:50]  *** Listing of results directory ***
[2026-04-29 04:56:51] total 475864
[2026-04-29 04:56:51] -rwx------. 1 boinc boinc     36322 Apr 28 09:58 runpilot2-wrapper.sh
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc      5631 Apr 28 10:59 queuedata.json
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc    683926 Apr 28 10:59 pilot3.tar.gz
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc       100 Apr 28 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 04:56:51] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 23:04 run_atlas
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc       105 Apr 28 23:04 job.xml
[2026-04-29 04:56:51] -rw-r--r--. 2 boinc boinc 261650895 Apr 28 23:04 EVNT.49863712._000057.pool.root.1
[2026-04-29 04:56:51] -rw-r--r--. 2 boinc boinc     15667 Apr 28 23:04 start_atlas.sh
[2026-04-29 04:56:51] drwxrwx--x. 2 boinc boinc        68 Apr 28 23:04 shared
[2026-04-29 04:56:51] -rw-r--r--. 2 boinc boinc    697412 Apr 28 23:04 input.tar.gz
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc      6306 Apr 28 23:04 init_data.xml
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc         0 Apr 28 23:04 boinc_lockfile
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc      2574 Apr 28 23:04 pandaJob.out
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc       415 Apr 28 23:10 workernode_map.json
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc   1001831 Apr 28 23:11 agis_schedconf.cvmfs.json
[2026-04-29 04:56:51] drwx------. 5 boinc boinc      4096 Apr 28 23:11 pilot3
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc 216768901 Apr 29 04:54 HITS.49863714._003923.pool.root.1
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc       489 Apr 29 04:54 boinc_task_state.xml
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc      1012 Apr 29 04:55 memory_monitor_summary.json
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc   1512704 Apr 29 04:55 agis_ddmendpoints.agis.ALL.json
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc    459097 Apr 29 04:55 log.49863714._003923.job.log.tgz.1
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc      6332 Apr 29 04:55 heartbeat_new.json
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc      6223 Apr 29 04:55 heartbeat.json
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc        95 Apr 29 04:56 pilot_heartbeat.json
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc      8192 Apr 29 04:56 boinc_mmap_file
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc        28 Apr 29 04:56 wrapper_checkpoint.txt
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc      5069 Apr 29 04:56 pilotlog.txt
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc   1904738 Apr 29 04:56 log.49863714._003923.job.log.1
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc       357 Apr 29 04:56 output.list
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc       410 Apr 29 04:56 runtime_log
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc   2385920 Apr 29 04:56 result.tar.gz
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc      8439 Apr 29 04:56 runtime_log.err
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc       656 Apr 29 04:56 689cd5299766.diag
[2026-04-29 04:56:51] -rw-r--r--. 1 boinc boinc     20616 Apr 29 04:56 stderr.txt
[2026-04-29 04:56:51] HITS file was successfully produced:
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc 216768901 Apr 29 04:54 shared/HITS.pool.root.1
[2026-04-29 04:56:51]  *** Contents of shared directory: ***
[2026-04-29 04:56:51] total 470244
[2026-04-29 04:56:51] -rw-r--r--. 2 boinc boinc 261650895 Apr 28 23:04 ATLAS.root_0
[2026-04-29 04:56:51] -rw-r--r--. 2 boinc boinc     15667 Apr 28 23:04 start_atlas.sh
[2026-04-29 04:56:51] -rw-r--r--. 2 boinc boinc    697412 Apr 28 23:04 input.tar.gz
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc 216768901 Apr 29 04:54 HITS.pool.root.1
[2026-04-29 04:56:51] -rw-------. 1 boinc boinc   2385920 Apr 29 04:56 result.tar.gz
04:56:52 (22643): run_atlas exited; CPU time 78601.992463
04:56:52 (22643): called boinc_finish(0)

</stderr_txt>
]]>

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