Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
00:12:04 (3228373): wrapper (7.7.26015): starting
00:12:04 (3228373): wrapper: running run_atlas (--nthreads 8)
[2026-04-29 00:12:04] Arguments: --nthreads 8
[2026-04-29 00:12:04] Threads: 8
[2026-04-29 00:12:04] Checking for CVMFS
[2026-04-29 00:12:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 00:12:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 00:12:06] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 00:12:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 00:12:06] 2.13.3.0 2875370 459 49788 158984 1 50 3096072 4096000 2763 130560 0 1388041 99.995 20390 1079 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-04-29 00:12:06] CVMFS is ok
[2026-04-29 00:12:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-29 00:12:06] Small home clusters do not require a local http proxy but it is suggested if
[2026-04-29 00:12:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-04-29 00:12:06] Further information can be found at the LHC@home message board.
[2026-04-29 00:12:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 00:12:06] Checking for apptainer binary...
[2026-04-29 00:12:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 00:12:06] Running /usr/bin/apptainer --version
[2026-04-29 00:12:06] apptainer version 1.4.5
[2026-04-29 00:12:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 00:12:06] Ryzen-9-7950X3D-Zen4-Ubu24
[2026-04-29 00:12:06] apptainer works
[2026-04-29 00:12:06] Set ATHENA_PROC_NUMBER=8
[2026-04-29 00:12:06] Set ATHENA_CORE_NUMBER=8
[2026-04-29 00:12:06] Starting ATLAS job with PandaID=7114605743
[2026-04-29 00:12:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 01:42:33]  *** The last 200 lines of the pilot log: ***
[2026-04-29 01:42:33]  domain=
[2026-04-29 01:42:33]  filesize=314352
[2026-04-29 01:42:33]  filetype=log
[2026-04-29 01:42:33]  guid=1d0a5463-d739-419c-b7dc-e5dbebb10a1d
[2026-04-29 01:42:33]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-29 01:42:33]  is_altstaged=None
[2026-04-29 01:42:33]  is_tar=False
[2026-04-29 01:42:33]  lfn=log.49176918._000561.job.log.tgz.1
[2026-04-29 01:42:33]  mtime=0
[2026-04-29 01:42:33]  protocol_id=None
[2026-04-29 01:42:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-29 01:42:33]  replicas=None
[2026-04-29 01:42:33]  scope=mc23_13p6TeV
[2026-04-29 01:42:33]  status=None
[2026-04-29 01:42:33]  status_code=0
[2026-04-29 01:42:33]  storage_token=
[2026-04-29 01:42:33]  surl=/var/lib/boinc-client/slots/7/PanDA_Pilot-7114605743/log.49176918._000561.job.log.tgz.1
[2026-04-29 01:42:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/5a/log.49176918._000561.job.log.tgz.1
[2026-04-29 01:42:33]  workdir=None
[2026-04-29 01:42:33] ]
[2026-04-29 01:42:33] 2026-04-28 23:42:07,820 | INFO     | transferring file log.49176918._000561.job.log.tgz.1 from /var/lib/boinc-client/slots/7/PanDA_Pilot-7114605743/log.49176918._000561.job.log.tgz.1 to /var/lib/boinc
[2026-04-29 01:42:33] 2026-04-28 23:42:07,820 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-7114605743/log.49176918._000561.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.491769
[2026-04-29 01:42:33] 2026-04-28 23:42:07,837 | INFO     | adding to output.list: log.49176918._000561.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/5a/log.49176918._000561.job.log.tg
[2026-04-29 01:42:33] 2026-04-28 23:42:07,837 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 01:42:33] 2026-04-28 23:42:07,838 | INFO     | summary of transferred files:
[2026-04-29 01:42:33] 2026-04-28 23:42:07,838 | INFO     |  -- lfn=log.49176918._000561.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 01:42:33] 2026-04-28 23:42:07,838 | INFO     | stage-out finished correctly
[2026-04-29 01:42:33] 2026-04-28 23:42:10,659 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 01:42:33] 2026-04-28 23:42:11,009 | WARNING  | process 3237148 can no longer be monitored (due to stat problems) - aborting
[2026-04-29 01:42:33] 2026-04-28 23:42:11,009 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-7114605743/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 01:42:33] 2026-04-28 23:42:11,058 | INFO     | number of running child processes to parent process 3237148: 1
[2026-04-29 01:42:33] 2026-04-28 23:42:11,058 | INFO     | maximum number of monitored processes: 6
[2026-04-29 01:42:33] 2026-04-28 23:42:12,365 | INFO     | job 7114605743 has state=finished
[2026-04-29 01:42:33] 2026-04-28 23:42:12,365 | INFO     | preparing for final server update for job 7114605743 in state='finished'
[2026-04-29 01:42:33] 2026-04-28 23:42:12,365 | INFO     | reading metadata from: /var/lib/boinc-client/slots/7/PanDA_Pilot-7114605743/jobReport.json
[2026-04-29 01:42:33] 2026-04-28 23:42:12,367 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/7/workernode_map.json
[2026-04-29 01:42:33] 2026-04-28 23:42:12,368 | INFO     | this job has now completed (state=finished)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,368 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,368 | INFO     | log transfer has been attempted: DONE
[2026-04-29 01:42:33] 2026-04-28 23:42:12,368 | INFO     | job 7114605743 has finished - writing final server update
[2026-04-29 01:42:33] 2026-04-28 23:42:12,368 | INFO     | total number of processed events: 400 (read)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,371 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-7114605743/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,371 | INFO     | extracted standard info from prmon json
[2026-04-29 01:42:33] 2026-04-28 23:42:12,371 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 01:42:33] 2026-04-28 23:42:12,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 01:42:33] 2026-04-28 23:42:12,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | fitting pss+swap vs Time
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | sum of square deviations: 164765880.0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | sum of deviations: 816123941.0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | mean x (centered): 0.0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | mean y: 2507069.827160494
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | intersect: 2507069.827160494
[2026-04-29 01:42:33] 2026-04-28 23:42:12,372 | INFO     | chi2: 0.0007226510864110069
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | current memory leak: 4.95 B/s (using 81 data points, chi2=0.00)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | could have reported an average CPU frequency of 3944 MHz (6 samples)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | ..............................
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . Timing measurements:
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . get job = 0 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . initial setup = 4 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . payload setup = 5 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . stage-in = 0 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . payload execution = 5367 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . stage-out = 0 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | . log creation = 0 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,373 | INFO     | ..............................
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | 
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | job summary report
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | --------------------------------------------------
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | PanDA job id: 7114605743
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | task id: 49176918
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | errors: (none)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | pilot state: finished 
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | transexitcode: 0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | exeerrorcode: 0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | exeerrordiag: 
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | exitcode: 0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | exitmsg: OK
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | cpuconsumptiontime: 40788 s
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | nevents: 400
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | neventsw: 0
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | pid: 3237148
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | pgrp: 3237148
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | corecount: 8
[2026-04-29 01:42:33] 2026-04-28 23:42:12,418 | INFO     | event service: False
[2026-04-29 01:42:33] 2026-04-28 23:42:12,419 | INFO     | sizes: {0: 2282454, 11: 2282454, 5376: 2309133, 5378: 2318145, 5381: 2318201, 5382: 2318395}
[2026-04-29 01:42:33] 2026-04-28 23:42:12,419 | INFO     | --------------------------------------------------
[2026-04-29 01:42:33] 2026-04-28 23:42:12,419 | INFO     | 
[2026-04-29 01:42:33] 2026-04-28 23:42:12,419 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | job 7114605743 has completed (purged errors)
[2026-04-29 01:42:33] 2026-04-28 23:42:12,436 | INFO     | overall cleanup function is called
[2026-04-29 01:42:33] 2026-04-28 23:42:13,444 | INFO     | --- collectZombieJob: --- 10, [3237148]
[2026-04-29 01:42:33] 2026-04-28 23:42:13,444 | INFO     | zombie collector waiting for pid 3237148
[2026-04-29 01:42:33] 2026-04-28 23:42:13,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 01:42:33] 2026-04-28 23:42:13,444 | INFO     | collected zombie processes
[2026-04-29 01:42:33] 2026-04-28 23:42:13,444 | INFO     | will attempt to kill all subprocesses of pid=3237148
[2026-04-29 01:42:33] 2026-04-28 23:42:13,497 | INFO     | process IDs to be killed: [3237148] (in reverse order)
[2026-04-29 01:42:33] 2026-04-28 23:42:13,538 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 01:42:33] 2026-04-28 23:42:13,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 01:42:33] 2026-04-28 23:42:13,540 | INFO     | did not find any defunct processes belonging to 3237148
[2026-04-29 01:42:33] 2026-04-28 23:42:13,542 | INFO     | did not find any defunct processes belonging to 3237148
[2026-04-29 01:42:33] 2026-04-28 23:42:13,542 | INFO     | Ready for new job
[2026-04-29 01:42:33] 2026-04-28 23:42:13,543 | INFO     | ***************************************
[2026-04-29 01:42:33] 2026-04-28 23:42:13,543 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 01:42:33] 2026-04-28 23:42:13,543 | INFO     | ***************************************
[2026-04-29 01:42:33] 2026-04-28 23:42:13,543 | INFO     | 
[2026-04-29 01:42:33] 2026-04-28 23:42:13,544 | INFO     | architecture information:
[2026-04-29 01:42:33] 2026-04-28 23:42:13,545 | INFO     | executing command: cat /etc/os-release
[2026-04-29 01:42:33] 2026-04-28 23:42:13,556 | INFO     | cat /etc/os-release:
[2026-04-29 01:42:33] NAME="CentOS Linux"
[2026-04-29 01:42:33] VERSION="7 (Core)"
[2026-04-29 01:42:33] ID="centos"
[2026-04-29 01:42:33] ID_LIKE="rhel fedora"
[2026-04-29 01:42:33] VERSION_ID="7"
[2026-04-29 01:42:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 01:42:33] ANSI_COLOR="0;31"
[2026-04-29 01:42:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 01:42:33] HOME_URL="https://www.centos.org/"
[2026-04-29 01:42:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 01:42:33] 
[2026-04-29 01:42:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 01:42:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 01:42:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 01:42:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 01:42:33] 
[2026-04-29 01:42:33] 2026-04-28 23:42:13,556 | INFO     | ***************************************
[2026-04-29 01:42:33] 2026-04-28 23:42:14,059 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-04-29 01:42:33] 2026-04-28 23:42:14,073 | INFO     | sufficient remaining disk space (1728370966528 B)
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | INFO     | update_server=False
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 01:42:33] 2026-04-28 23:42:14,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 01:42:33] 2026-04-28 23:42:14,307 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-04-29 01:42:33] 2026-04-28 23:42:14,341 | INFO     | all job control threads have been joined
[2026-04-29 01:42:33] 2026-04-28 23:42:14,566 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 01:42:33] 2026-04-28 23:42:14,566 | INFO     | aborting loop
[2026-04-29 01:42:33] 2026-04-28 23:42:14,683 | INFO     | all data control threads have been joined
[2026-04-29 01:42:33] 2026-04-28 23:42:15,079 | INFO     | [job] retrieve thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,079 | INFO     | [job] queue monitor thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,250 | INFO     | all payload control threads have been joined
[2026-04-29 01:42:33] 2026-04-28 23:42:15,341 | INFO     | [payload] failed_post thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,346 | INFO     | [job] control thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,571 | INFO     | [job] job monitor thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,684 | INFO     | [data] control thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,845 | INFO     | [job] validate thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:15,882 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,072 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,080 | INFO     | [data] copytool_out thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,135 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,256 | INFO     | [payload] control thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,383 | INFO     | [data] copytool_in thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,533 | INFO     | [payload] validate_post thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:16,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 01:42:33] 2026-04-28 23:42:20,721 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:24,466 | INFO     | job.realtimelogging is not enabled
[2026-04-29 01:42:33] 2026-04-28 23:42:25,472 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 01:42:33] 2026-04-28 23:42:27,337 | INFO     | [monitor] cgroup control has ended
[2026-04-29 01:42:33] 2026-04-28 23:42:28,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127180895516480)>', '<ExcThread(monitor, started 127180407297792)>']
[2026-04-29 01:42:33] 2026-04-28 23:42:28,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 01:42:33] 2026-04-28 23:42:28,137 | INFO     | [monitor] control thread has ended
[2026-04-29 01:42:33] 2026-04-28 23:42:33,022 | INFO     | all workflow threads have been joined
[2026-04-29 01:42:33] 2026-04-28 23:42:33,023 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 01:42:33] 2026-04-28 23:42:33,023 | INFO     | traces error code: 0
[2026-04-29 01:42:33] 2026-04-28 23:42:33,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 01:42:33] 2026-04-28 23:42:33,105 [wrapper] ==== pilot stdout END ====
[2026-04-29 01:42:33] 2026-04-28 23:42:33,108 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 01:42:33] 2026-04-28 23:42:33,110 [wrapper] pilotpid: 3232569
[2026-04-29 01:42:33] 2026-04-28 23:42:33,112 [wrapper] Pilot exit status: 0
[2026-04-29 01:42:33] 2026-04-28 23:42:33,119 [wrapper] pandaids: 7114605743
[2026-04-29 01:42:33] 2026-04-28 23:42:33,144 [wrapper] cleanup supervisor_pilot 3286991 3232570
[2026-04-29 01:42:33] 2026-04-28 23:42:33,146 [wrapper] Test setup, not cleaning
[2026-04-29 01:42:33] 2026-04-28 23:42:33,147 [wrapper] apfmon messages muted
[2026-04-29 01:42:33] 2026-04-28 23:42:33,149 [wrapper] ==== wrapper stdout END ====
[2026-04-29 01:42:33] 2026-04-28 23:42:33,151 [wrapper] ==== wrapper stderr END ====
[2026-04-29 01:42:33]  *** Error codes and diagnostics ***
[2026-04-29 01:42:33]     "exeErrorCode": 0,
[2026-04-29 01:42:33]     "pilotErrorCode": 0,
[2026-04-29 01:42:33]  *** Listing of results directory ***
[2026-04-29 01:42:33] total 431180
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc      5631 Apr 28 08:41 queuedata.json
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc    683926 Apr 28 08:41 pilot3.tar.gz
[2026-04-29 01:42:33] -rwx------ 1 boinc boinc     36322 Apr 28 08:41 runpilot2-wrapper.sh
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc       100 Apr 29 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 01:42:33] -rwxr-xr-x 1 boinc boinc      7986 Apr 29 00:12 run_atlas
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc       105 Apr 29 00:12 job.xml
[2026-04-29 01:42:33] -rw-r--r-- 2 boinc boinc 230138703 Apr 29 00:12 EVNT.49135721._000007.pool.root.1
[2026-04-29 01:42:33] -rw-r--r-- 2 boinc boinc     15667 Apr 29 00:12 start_atlas.sh
[2026-04-29 01:42:33] drwxrwx--x 2 boinc boinc      4096 Apr 29 00:12 shared
[2026-04-29 01:42:33] -rw-r--r-- 2 boinc boinc    697423 Apr 29 00:12 input.tar.gz
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc         0 Apr 29 00:12 boinc_lockfile
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc      2598 Apr 29 00:12 pandaJob.out
[2026-04-29 01:42:33] -rw------- 1 boinc boinc   1001138 Apr 29 00:12 agis_schedconf.cvmfs.json
[2026-04-29 01:42:33] -rw------- 1 boinc boinc   1512704 Apr 29 00:12 agis_ddmendpoints.agis.ALL.json
[2026-04-29 01:42:33] -rw------- 1 boinc boinc       445 Apr 29 00:12 workernode_map.json
[2026-04-29 01:42:33] drwx------ 5 boinc boinc      4096 Apr 29 00:12 pilot3
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc      9453 Apr 29 01:39 init_data.xml
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc       487 Apr 29 01:41 boinc_task_state.xml
[2026-04-29 01:42:33] -rw------- 1 boinc boinc 205532089 Apr 29 01:41 HITS.49176918._000561.pool.root.1
[2026-04-29 01:42:33] -rw------- 1 boinc boinc      1027 Apr 29 01:42 memory_monitor_summary.json
[2026-04-29 01:42:33] -rw------- 1 boinc boinc        95 Apr 29 01:42 pilot_heartbeat.json
[2026-04-29 01:42:33] -rw------- 1 boinc boinc    314352 Apr 29 01:42 log.49176918._000561.job.log.tgz.1
[2026-04-29 01:42:33] -rw------- 1 boinc boinc      6365 Apr 29 01:42 heartbeat_new.json
[2026-04-29 01:42:33] -rw------- 1 boinc boinc      6256 Apr 29 01:42 heartbeat.json
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc        27 Apr 29 01:42 wrapper_checkpoint.txt
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc      8192 Apr 29 01:42 boinc_mmap_file
[2026-04-29 01:42:33] -rw------- 1 boinc boinc      4632 Apr 29 01:42 pilotlog.txt
[2026-04-29 01:42:33] -rw------- 1 boinc boinc    541945 Apr 29 01:42 log.49176918._000561.job.log.1
[2026-04-29 01:42:33] -rw------- 1 boinc boinc       357 Apr 29 01:42 output.list
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc       410 Apr 29 01:42 runtime_log
[2026-04-29 01:42:33] -rw------- 1 boinc boinc    870400 Apr 29 01:42 result.tar.gz
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc      8591 Apr 29 01:42 runtime_log.err
[2026-04-29 01:42:33] -rw------- 1 boinc boinc       659 Apr 29 01:42 569f95672e1d.diag
[2026-04-29 01:42:33] -rw-r--r-- 1 boinc boinc     21088 Apr 29 01:42 stderr.txt
[2026-04-29 01:42:33] HITS file was successfully produced:
[2026-04-29 01:42:33] -rw------- 1 boinc boinc 205532089 Apr 29 01:41 shared/HITS.pool.root.1
[2026-04-29 01:42:33]  *** Contents of shared directory: ***
[2026-04-29 01:42:33] total 427024
[2026-04-29 01:42:33] -rw-r--r-- 2 boinc boinc 230138703 Apr 29 00:12 ATLAS.root_0
[2026-04-29 01:42:33] -rw-r--r-- 2 boinc boinc     15667 Apr 29 00:12 start_atlas.sh
[2026-04-29 01:42:33] -rw-r--r-- 2 boinc boinc    697423 Apr 29 00:12 input.tar.gz
[2026-04-29 01:42:33] -rw------- 1 boinc boinc 205532089 Apr 29 01:41 HITS.pool.root.1
[2026-04-29 01:42:33] -rw------- 1 boinc boinc    870400 Apr 29 01:42 result.tar.gz
01:42:34 (3228373): run_atlas exited; CPU time 40794.457506
01:42:34 (3228373): called boinc_finish(0)

</stderr_txt>
]]>

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