Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:05:24 (2508015): wrapper (7.7.26015): starting
18:05:24 (2508015): wrapper: running run_atlas (--nthreads 3)
[2026-04-28 18:05:24] Arguments: --nthreads 3
[2026-04-28 18:05:24] Threads: 3
[2026-04-28 18:05:24] Checking for CVMFS
[2026-04-28 18:05:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 18:05:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 18:05:25] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 18:05:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 18:05:25] 2.9.2.0 2155226 3082 77556 158972 0 50 34809203 36864001 0 130560 0 1336013 99.983 113558 18085 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-28 18:05:25] CVMFS is ok
[2026-04-28 18:05:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 18:05:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 18:05:25] Further information can be found at the LHC@home message board.
[2026-04-28 18:05:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 18:05:25] Checking for apptainer binary...
[2026-04-28 18:05:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 18:05:25] Running /usr/bin/apptainer --version
[2026-04-28 18:05:25] apptainer version 1.4.1-1.1
[2026-04-28 18:05:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 18:05:25] thA335a
[2026-04-28 18:05:25] apptainer works
[2026-04-28 18:05:25] Set ATHENA_PROC_NUMBER=3
[2026-04-28 18:05:25] Set ATHENA_CORE_NUMBER=3
[2026-04-28 18:05:25] Starting ATLAS job with PandaID=7116225309
[2026-04-28 18:05:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 20:06:49]  *** The last 200 lines of the pilot log: ***
[2026-04-28 20:06:49] 2026-04-28 18:06:04,903 | INFO     | collected zombie processes
[2026-04-28 20:06:49] 2026-04-28 18:06:04,903 | INFO     | will attempt to kill all subprocesses of pid=2516502
[2026-04-28 20:06:49] 2026-04-28 18:06:04,933 | INFO     | process IDs to be killed: [2516502] (in reverse order)
[2026-04-28 20:06:49] 2026-04-28 18:06:04,958 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 20:06:49] 2026-04-28 18:06:04,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 20:06:49] 2026-04-28 18:06:04,960 | INFO     | did not find any defunct processes belonging to 2516502
[2026-04-28 20:06:49] 2026-04-28 18:06:04,961 | INFO     | did not find any defunct processes belonging to 2516502
[2026-04-28 20:06:49] 2026-04-28 18:06:04,961 | INFO     | Ready for new job
[2026-04-28 20:06:49] 2026-04-28 18:06:04,962 | INFO     | ***************************************
[2026-04-28 20:06:49] 2026-04-28 18:06:04,962 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 20:06:49] 2026-04-28 18:06:04,962 | INFO     | ***************************************
[2026-04-28 20:06:49] 2026-04-28 18:06:04,962 | INFO     | 
[2026-04-28 20:06:49] 2026-04-28 18:06:04,962 | INFO     | architecture information:
[2026-04-28 20:06:49] 2026-04-28 18:06:04,962 | INFO     | executing command: cat /etc/os-release
[2026-04-28 20:06:49] 2026-04-28 18:06:04,972 | INFO     | cat /etc/os-release:
[2026-04-28 20:06:49] NAME="CentOS Linux"
[2026-04-28 20:06:49] VERSION="7 (Core)"
[2026-04-28 20:06:49] ID="centos"
[2026-04-28 20:06:49] ID_LIKE="rhel fedora"
[2026-04-28 20:06:49] VERSION_ID="7"
[2026-04-28 20:06:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 20:06:49] ANSI_COLOR="0;31"
[2026-04-28 20:06:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 20:06:49] HOME_URL="https://www.centos.org/"
[2026-04-28 20:06:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 20:06:49] 
[2026-04-28 20:06:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 20:06:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 20:06:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 20:06:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 20:06:49] 
[2026-04-28 20:06:49] 2026-04-28 18:06:04,972 | INFO     | ***************************************
[2026-04-28 20:06:49] 2026-04-28 18:06:05,475 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-28 20:06:49] 2026-04-28 18:06:05,490 | INFO     | sufficient remaining disk space (367186149376 B)
[2026-04-28 20:06:49] 2026-04-28 18:06:05,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 20:06:49] 2026-04-28 18:06:05,490 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 20:06:49] 2026-04-28 18:06:05,490 | INFO     | update_server=False
[2026-04-28 20:06:49] 2026-04-28 18:06:05,490 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 20:06:49] 2026-04-28 18:06:05,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 20:06:49] 2026-04-28 18:06:05,651 | INFO     | all data control threads have been joined
[2026-04-28 20:06:49] 2026-04-28 18:06:05,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 20:06:49] 2026-04-28 18:06:06,015 | WARNING  | process 2516502 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 20:06:49] 2026-04-28 18:06:06,043 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 20:06:49] 2026-04-28 18:06:06,043 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 20:06:49] 2026-04-28 18:06:06,043 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-28 20:06:49] 2026-04-28 18:06:06,043 | WARNING  | maxPSS not found in memory monitor output
[2026-04-28 20:06:49] 2026-04-28 18:06:06,044 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7116225309/payload.stdout) since it has not been created yet
[2026-04-28 20:06:49] 2026-04-28 18:06:06,044 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-28 20:06:49] 2026-04-28 18:06:06,055 | INFO     | sufficient remaining disk space (367186149376 B)
[2026-04-28 20:06:49] 2026-04-28 18:06:06,055 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-28 20:06:49] 2026-04-28 18:06:06,055 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7116225309/HITS.49863714._002959.pool.root.1 since it does not exist
[2026-04-28 20:06:49] 2026-04-28 18:06:06,083 | INFO     | number of running child processes to parent process 2516502: 1
[2026-04-28 20:06:49] 2026-04-28 18:06:06,083 | INFO     | maximum number of monitored processes: 6
[2026-04-28 20:06:49] 2026-04-28 18:06:06,083 | INFO     | aborting job monitoring since job object (job id=7116225309) has expired
[2026-04-28 20:06:49] 2026-04-28 18:06:06,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 20:06:49] 2026-04-28 18:06:06,083 | INFO     | will abort loop
[2026-04-28 20:06:49] 2026-04-28 18:06:06,404 | INFO     | all job control threads have been joined
[2026-04-28 20:06:49] 2026-04-28 18:06:06,496 | INFO     | [job] queue monitor thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:06,496 | INFO     | [job] retrieve thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:06,636 | INFO     | all payload control threads have been joined
[2026-04-28 20:06:49] 2026-04-28 18:06:06,656 | INFO     | [data] control thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:06,694 | INFO     | [data] copytool_in thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:06,714 | INFO     | [payload] validate_post thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:06,880 | INFO     | [payload] failed_post thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:06,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 20:06:49] 2026-04-28 18:06:07,088 | INFO     | [job] job monitor thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,410 | INFO     | [job] control thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,642 | INFO     | [payload] control thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,789 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,892 | INFO     | [job] validate thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,951 | INFO     | [data] copytool_out thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,952 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:07,980 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:10,997 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:16,450 | INFO     | job.realtimelogging is not enabled
[2026-04-28 20:06:49] 2026-04-28 18:06:17,455 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 20:06:49] 2026-04-28 18:06:36,592 | INFO     | PID=2512072 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 20:06:49] 2026-04-28 18:06:36,592 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 20:06:49] 2026-04-28 18:06:36,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 20:06:49] 2026-04-28 18:06:36,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 20:06:49] 2026-04-28 18:06:44,265 | INFO     | [monitor] cgroup control has ended
[2026-04-28 20:06:49] 2026-04-28 18:06:44,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618255722304)>', '<ExcThread(monitor, started 140617690638080)>']
[2026-04-28 20:06:49] 2026-04-28 18:06:45,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 20:06:49] 2026-04-28 18:06:45,640 | INFO     | [monitor] control thread has ended
[2026-04-28 20:06:49] 2026-04-28 18:06:49,807 | INFO     | all workflow threads have been joined
[2026-04-28 20:06:49] 2026-04-28 18:06:49,807 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 20:06:49] 2026-04-28 18:06:49,807 | INFO     | traces error code: 0
[2026-04-28 20:06:49] 2026-04-28 18:06:49,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 20:06:49] 2026-04-28 18:06:49,867 [wrapper] ==== pilot stdout END ====
[2026-04-28 20:06:49] 2026-04-28 18:06:49,870 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 20:06:49] 2026-04-28 18:06:49,873 [wrapper] pilotpid: 2512072
[2026-04-28 20:06:49] 2026-04-28 18:06:49,875 [wrapper] Pilot exit status: 0
[2026-04-28 20:06:49] 2026-04-28 18:06:49,883 [wrapper] pandaids: 7116225309
[2026-04-28 20:06:49] 2026-04-28 18:06:49,901 [wrapper] cleanup supervisor_pilot 2522730 2512073
[2026-04-28 20:06:49] 2026-04-28 18:06:49,903 [wrapper] Test setup, not cleaning
[2026-04-28 20:06:49] 2026-04-28 18:06:49,906 [wrapper] apfmon messages muted
[2026-04-28 20:06:49] 2026-04-28 18:06:49,908 [wrapper] ==== wrapper stdout END ====
[2026-04-28 20:06:49] 2026-04-28 18:06:49,911 [wrapper] ==== wrapper stderr END ====
[2026-04-28 20:06:49]  *** Error codes and diagnostics ***
[2026-04-28 20:06:49]     "exeErrorCode": 0,
[2026-04-28 20:06:49]     "pilotErrorCode": 0,
[2026-04-28 20:06:49]  *** Listing of results directory ***
[2026-04-28 20:06:49] total 474460
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc    683926 Apr 27 09:25 pilot3.tar.gz
[2026-04-28 20:06:49] -rwx------ 1 boinc boinc     36322 Apr 27 09:28 runpilot2-wrapper.sh
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc      5631 Apr 27 09:33 queuedata.json
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc       100 Apr 28 18:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 20:06:49] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 18:05 run_atlas
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc       105 Apr 28 18:05 job.xml
[2026-04-28 20:06:49] -rw-r--r-- 2 boinc boinc 262580872 Apr 28 18:05 EVNT.49863712._000121.pool.root.1
[2026-04-28 20:06:49] -rw-r--r-- 2 boinc boinc    697414 Apr 28 18:05 input.tar.gz
[2026-04-28 20:06:49] -rw-r--r-- 2 boinc boinc     15667 Apr 28 18:05 start_atlas.sh
[2026-04-28 20:06:49] drwxrwx--x 2 boinc boinc      4096 Apr 28 18:05 shared
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc         0 Apr 28 18:05 boinc_setup_complete
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc      6363 Apr 28 18:05 init_data.xml
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc         0 Apr 28 18:05 boinc_lockfile
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc      2574 Apr 28 18:05 pandaJob.out
[2026-04-28 20:06:49] -rw------- 1 boinc boinc    999571 Apr 28 18:05 agis_schedconf.cvmfs.json
[2026-04-28 20:06:49] -rw------- 1 boinc boinc   1512704 Apr 28 18:05 agis_ddmendpoints.agis.ALL.json
[2026-04-28 20:06:49] -rw------- 1 boinc boinc       423 Apr 28 18:05 workernode_map.json
[2026-04-28 20:06:49] drwx------ 5 boinc boinc      4096 Apr 28 18:05 pilot3
[2026-04-28 20:06:49] -rw------- 1 boinc boinc 217265893 Apr 28 20:05 HITS.49863714._002959.pool.root.1
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc       487 Apr 28 20:05 boinc_task_state.xml
[2026-04-28 20:06:49] -rw------- 1 boinc boinc      1021 Apr 28 20:05 memory_monitor_summary.json
[2026-04-28 20:06:49] -rw------- 1 boinc boinc    248058 Apr 28 20:06 log.49863714._002959.job.log.tgz.1
[2026-04-28 20:06:49] -rw------- 1 boinc boinc      6315 Apr 28 20:06 heartbeat_new.json
[2026-04-28 20:06:49] -rw------- 1 boinc boinc      6206 Apr 28 20:06 heartbeat.json
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc      8192 Apr 28 20:06 boinc_mmap_file
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc        27 Apr 28 20:06 wrapper_checkpoint.txt
[2026-04-28 20:06:49] -rw------- 1 boinc boinc        95 Apr 28 20:06 pilot_heartbeat.json
[2026-04-28 20:06:49] -rw------- 1 boinc boinc      6324 Apr 28 20:06 pilotlog.txt
[2026-04-28 20:06:49] -rw------- 1 boinc boinc    687988 Apr 28 20:06 log.49863714._002959.job.log.1
[2026-04-28 20:06:49] -rw------- 1 boinc boinc       357 Apr 28 20:06 output.list
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc       410 Apr 28 20:06 runtime_log
[2026-04-28 20:06:49] -rw------- 1 boinc boinc    952320 Apr 28 20:06 result.tar.gz
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc      8524 Apr 28 20:06 runtime_log.err
[2026-04-28 20:06:49] -rw------- 1 boinc boinc       659 Apr 28 20:06 102efd2d38a3.diag
[2026-04-28 20:06:49] -rw-r--r-- 1 boinc boinc     11948 Apr 28 20:06 stderr.txt
[2026-04-28 20:06:49] HITS file was successfully produced:
[2026-04-28 20:06:49] -rw------- 1 boinc boinc 217265893 Apr 28 20:05 shared/HITS.pool.root.1
[2026-04-28 20:06:49]  *** Contents of shared directory: ***
[2026-04-28 20:06:49] total 470244
[2026-04-28 20:06:49] -rw-r--r-- 2 boinc boinc 262580872 Apr 28 18:05 ATLAS.root_0
[2026-04-28 20:06:49] -rw-r--r-- 2 boinc boinc    697414 Apr 28 18:05 input.tar.gz
[2026-04-28 20:06:49] -rw-r--r-- 2 boinc boinc     15667 Apr 28 18:05 start_atlas.sh
[2026-04-28 20:06:49] -rw------- 1 boinc boinc 217265893 Apr 28 20:05 HITS.pool.root.1
[2026-04-28 20:06:49] -rw------- 1 boinc boinc    952320 Apr 28 20:06 result.tar.gz
20:06:51 (2508015): run_atlas exited; CPU time 20257.268744
20:06:51 (2508015): called boinc_finish(0)

</stderr_txt>
]]>

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