Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:10:32 (1194): wrapper (7.7.26015): starting
01:10:32 (1194): wrapper: running run_atlas (--nthreads 8)
[2026-04-29 01:10:32] Arguments: --nthreads 8
[2026-04-29 01:10:32] Threads: 8
[2026-04-29 01:10:32] Checking for CVMFS
[2026-04-29 01:10:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-29 01:10:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-29 01:10:36] Running cvmfs_config stat atlas.cern.ch
[2026-04-29 01:10:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-29 01:10:37] 2.11.2.0 2888 19086 102208 158985 1 53 12607332 25165824 96 130560 0 70576707 99.983 9126607 6354 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-29 01:10:37] CVMFS is ok
[2026-04-29 01:10:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-29 01:10:37] Checking for apptainer binary...
[2026-04-29 01:10:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-29 01:10:37] Running /usr/bin/apptainer --version
[2026-04-29 01:10:37] apptainer version 1.3.2-1.el7
[2026-04-29 01:10:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-29 01:11:03] cg-vwn421.simple-grid.lan
[2026-04-29 01:11:03] apptainer works
[2026-04-29 01:11:03] Set ATHENA_PROC_NUMBER=8
[2026-04-29 01:11:03] Set ATHENA_CORE_NUMBER=8
[2026-04-29 01:11:03] Starting ATLAS job with PandaID=7116402711
[2026-04-29 01:11:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 06:09:12]  *** The last 200 lines of the pilot log: ***
[2026-04-29 06:09:12] 2026-04-29 04:08:04,245 | INFO     | this job has now completed (state=finished)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,245 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,245 | INFO     | log transfer has been attempted: DONE
[2026-04-29 06:09:12] 2026-04-29 04:08:04,245 | INFO     | job 7116402711 has finished - writing final server update
[2026-04-29 06:09:12] 2026-04-29 04:08:04,246 | INFO     | total number of processed events: 400 (read)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,248 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-7116402711/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,248 | INFO     | extracted standard info from prmon json
[2026-04-29 06:09:12] 2026-04-29 04:08:04,249 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 06:09:12] 2026-04-29 04:08:04,249 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 06:09:12] 2026-04-29 04:08:04,249 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 06:09:12] 2026-04-29 04:08:04,254 | INFO     | fitting pss+swap vs Time
[2026-04-29 06:09:12] 2026-04-29 04:08:04,255 | INFO     | sum of square deviations: 6806862510.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,258 | INFO     | sum of deviations: 129493688472.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,258 | INFO     | mean x (centered): 0.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,258 | INFO     | mean y: 2468914.2714285715
[2026-04-29 06:09:12] 2026-04-29 04:08:04,258 | INFO     | intersect: 2468914.2714285715
[2026-04-29 06:09:12] 2026-04-29 04:08:04,258 | INFO     | chi2: 9.407759567862708
[2026-04-29 06:09:12] 2026-04-29 04:08:04,259 | INFO     | sum of square deviations: 6448679050.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,262 | INFO     | sum of deviations: 145898036734.00006
[2026-04-29 06:09:12] 2026-04-29 04:08:04,262 | INFO     | mean x (centered): 0.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,262 | INFO     | mean y: 2475782.629090909
[2026-04-29 06:09:12] 2026-04-29 04:08:04,262 | INFO     | intersect: 2475782.629090909
[2026-04-29 06:09:12] 2026-04-29 04:08:04,262 | INFO     | chi2: 8.714541283579393
[2026-04-29 06:09:12] 2026-04-29 04:08:04,262 | INFO     | current chi2=8.714541283579393 (change=7.368579939599829 %)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,263 | INFO     | right removable region: 274
[2026-04-29 06:09:12] 2026-04-29 04:08:04,263 | INFO     | sum of square deviations: 6448679050.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,266 | INFO     | sum of deviations: 28873761106.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,266 | INFO     | mean x (centered): 0.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,266 | INFO     | mean y: 2511735.770909091
[2026-04-29 06:09:12] 2026-04-29 04:08:04,266 | INFO     | intersect: 2511735.770909091
[2026-04-29 06:09:12] 2026-04-29 04:08:04,266 | INFO     | chi2: 4.166019642442629
[2026-04-29 06:09:12] 2026-04-29 04:08:04,267 | INFO     | current chi2=4.166019642442629 (change=55.717196933115474 %)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,267 | INFO     | sum of square deviations: 6103286527.5
[2026-04-29 06:09:12] 2026-04-29 04:08:04,269 | INFO     | sum of deviations: -49049768526.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,270 | INFO     | mean x (centered): 0.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,270 | INFO     | mean y: 2546102.451851852
[2026-04-29 06:09:12] 2026-04-29 04:08:04,270 | INFO     | intersect: 2546102.451851852
[2026-04-29 06:09:12] 2026-04-29 04:08:04,270 | INFO     | chi2: 1.2184283667197673
[2026-04-29 06:09:12] 2026-04-29 04:08:04,270 | INFO     | current chi2=1.2184283667197673 (change=70.75317758210626 %)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,271 | INFO     | sum of square deviations: 5770452380.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,273 | INFO     | sum of deviations: -65136929232.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,273 | INFO     | mean x (centered): 0.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,273 | INFO     | mean y: 2553422.833962264
[2026-04-29 06:09:12] 2026-04-29 04:08:04,274 | INFO     | intersect: 2553422.833962264
[2026-04-29 06:09:12] 2026-04-29 04:08:04,274 | INFO     | chi2: 1.0090879762527303
[2026-04-29 06:09:12] 2026-04-29 04:08:04,274 | INFO     | current chi2=1.0090879762527303 (change=17.181181609438372 %)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,274 | INFO     | left removable region: 15
[2026-04-29 06:09:12] 2026-04-29 04:08:04,275 | INFO     | sum of square deviations: 5387301010.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,277 | INFO     | sum of deviations: -46004652186.00001
[2026-04-29 06:09:12] 2026-04-29 04:08:04,277 | INFO     | mean x (centered): 0.0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,277 | INFO     | mean y: 2562398.714285714
[2026-04-29 06:09:12] 2026-04-29 04:08:04,277 | INFO     | intersect: 2562398.714285714
[2026-04-29 06:09:12] 2026-04-29 04:08:04,278 | INFO     | chi2: 0.2195591061406442
[2026-04-29 06:09:12] 2026-04-29 04:08:04,278 | INFO     | current memory leak: -8.54 B/s (using 259 data points, chi2=0.22)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,278 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | ..............................
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . Timing measurements:
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . get job = 0 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . initial setup = 124 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . payload setup = 206 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . stage-in = 0 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . payload execution = 17201 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . stage-out = 5 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | . log creation = 1 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,279 | INFO     | ..............................
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | 
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | job summary report
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | --------------------------------------------------
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | PanDA job id: 7116402711
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | task id: 49863733
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | errors: (none)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,424 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | pilot state: finished 
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | transexitcode: 0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | exeerrorcode: 0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | exeerrordiag: 
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | exitcode: 0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | exitmsg: OK
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | cpuconsumptiontime: 70981 s
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | nevents: 400
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | neventsw: 0
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | pid: 9670
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | pgrp: 9670
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | corecount: 8
[2026-04-29 06:09:12] 2026-04-29 04:08:04,425 | INFO     | event service: False
[2026-04-29 06:09:12] 2026-04-29 04:08:04,426 | INFO     | sizes: {0: 2280055, 1: 2280741, 2: 2256196, 3: 2282598, 13: 2282598, 17412: 2314866, 17419: 2323922, 17420: 2324060}
[2026-04-29 06:09:12] 2026-04-29 04:08:04,426 | INFO     | --------------------------------------------------
[2026-04-29 06:09:12] 2026-04-29 04:08:04,426 | INFO     | 
[2026-04-29 06:09:12] 2026-04-29 04:08:04,426 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2026-04-29 06:09:12] 2026-04-29 04:08:04,970 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,973 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,973 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,973 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 06:09:12] 2026-04-29 04:08:04,973 | INFO     | job 7116402711 has completed (purged errors)
[2026-04-29 06:09:12] 2026-04-29 04:08:04,973 | INFO     | overall cleanup function is called
[2026-04-29 06:09:12] 2026-04-29 04:08:05,982 | INFO     | --- collectZombieJob: --- 10, [9670]
[2026-04-29 06:09:12] 2026-04-29 04:08:05,982 | INFO     | zombie collector waiting for pid 9670
[2026-04-29 06:09:12] 2026-04-29 04:08:05,982 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 06:09:12] 2026-04-29 04:08:05,982 | INFO     | collected zombie processes
[2026-04-29 06:09:12] 2026-04-29 04:08:05,982 | INFO     | will attempt to kill all subprocesses of pid=9670
[2026-04-29 06:09:12] 2026-04-29 04:08:06,054 | INFO     | process IDs to be killed: [9670] (in reverse order)
[2026-04-29 06:09:12] 2026-04-29 04:08:06,766 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 06:09:12] 2026-04-29 04:08:06,767 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 06:09:12] 2026-04-29 04:08:06,769 | INFO     | did not find any defunct processes belonging to 9670
[2026-04-29 06:09:12] 2026-04-29 04:08:06,771 | INFO     | did not find any defunct processes belonging to 9670
[2026-04-29 06:09:12] 2026-04-29 04:08:06,771 | INFO     | Ready for new job
[2026-04-29 06:09:12] 2026-04-29 04:08:06,776 | INFO     | ***************************************
[2026-04-29 06:09:12] 2026-04-29 04:08:06,776 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 06:09:12] 2026-04-29 04:08:06,776 | INFO     | ***************************************
[2026-04-29 06:09:12] 2026-04-29 04:08:06,776 | INFO     | 
[2026-04-29 06:09:12] 2026-04-29 04:08:06,777 | INFO     | pilot is running in a VM
[2026-04-29 06:09:12] 2026-04-29 04:08:06,777 | INFO     | architecture information:
[2026-04-29 06:09:12] 2026-04-29 04:08:06,788 | INFO     | executing command: cat /etc/os-release
[2026-04-29 06:09:12] 2026-04-29 04:08:07,084 | INFO     | cat /etc/os-release:
[2026-04-29 06:09:12] NAME="CentOS Linux"
[2026-04-29 06:09:12] VERSION="7 (Core)"
[2026-04-29 06:09:12] ID="centos"
[2026-04-29 06:09:12] ID_LIKE="rhel fedora"
[2026-04-29 06:09:12] VERSION_ID="7"
[2026-04-29 06:09:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 06:09:12] ANSI_COLOR="0;31"
[2026-04-29 06:09:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 06:09:12] HOME_URL="https://www.centos.org/"
[2026-04-29 06:09:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 06:09:12] 
[2026-04-29 06:09:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 06:09:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 06:09:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 06:09:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 06:09:12] 
[2026-04-29 06:09:12] 2026-04-29 04:08:07,084 | INFO     | ***************************************
[2026-04-29 06:09:12] 2026-04-29 04:08:07,588 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2026-04-29 06:09:12] 2026-04-29 04:08:07,877 | INFO     | sufficient remaining disk space (494652096512 B)
[2026-04-29 06:09:12] 2026-04-29 04:08:07,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 06:09:12] 2026-04-29 04:08:07,878 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 06:09:12] 2026-04-29 04:08:07,878 | INFO     | update_server=False
[2026-04-29 06:09:12] 2026-04-29 04:08:07,878 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 06:09:12] 2026-04-29 04:08:07,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 06:09:12] 2026-04-29 04:08:07,879 | INFO     | aborting loop
[2026-04-29 06:09:12] 2026-04-29 04:08:08,146 | INFO     | all data control threads have been joined
[2026-04-29 06:09:12] 2026-04-29 04:08:08,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 06:09:12] 2026-04-29 04:08:08,551 | INFO     | all payload control threads have been joined
[2026-04-29 06:09:12] 2026-04-29 04:08:08,884 | INFO     | [job] retrieve thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:08,885 | INFO     | [job] job monitor thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:08,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 06:09:12] 2026-04-29 04:08:08,993 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,039 | INFO     | [job] validate thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,041 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,152 | INFO     | [data] control thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,206 | INFO     | [data] copytool_in thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,293 | INFO     | all job control threads have been joined
[2026-04-29 06:09:12] 2026-04-29 04:08:09,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 06:09:12] 2026-04-29 04:08:09,452 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,557 | INFO     | [payload] control thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:09,721 | INFO     | [payload] failed_post thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:10,032 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:10,242 | INFO     | [data] copytool_out thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:10,262 | INFO     | [payload] validate_post thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:10,300 | INFO     | [job] control thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:10,450 | INFO     | [job] queue monitor thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:12,915 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 06:09:12] 2026-04-29 04:08:36,999 | INFO     | PID=5215 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-29 06:09:12] 2026-04-29 04:08:36,999 | INFO     | .. there are 2 such processes running
[2026-04-29 06:09:12] 2026-04-29 04:08:37,004 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 06:09:12] 2026-04-29 04:08:37,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 06:09:12] 2026-04-29 04:08:37,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 06:09:12] 2026-04-29 04:09:00,474 | INFO     | [monitor] cgroup control has ended
[2026-04-29 06:09:12] 2026-04-29 04:09:01,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852439263040)>', '<ExcThread(monitor, started 139852137862912)>']
[2026-04-29 06:09:12] 2026-04-29 04:09:02,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 06:09:12] 2026-04-29 04:09:02,154 | INFO     | [monitor] control thread has ended
[2026-04-29 06:09:12] 2026-04-29 04:09:06,507 | INFO     | all workflow threads have been joined
[2026-04-29 06:09:12] 2026-04-29 04:09:06,507 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 06:09:12] 2026-04-29 04:09:06,507 | INFO     | traces error code: 0
[2026-04-29 06:09:12] 2026-04-29 04:09:06,507 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 06:09:12] 2026-04-29 04:09:07,026 [wrapper] ==== pilot stdout END ====
[2026-04-29 06:09:12] 2026-04-29 04:09:07,130 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 06:09:12] 2026-04-29 04:09:07,223 [wrapper] pilotpid: 5215
[2026-04-29 06:09:12] 2026-04-29 04:09:07,320 [wrapper] Pilot exit status: 0
[2026-04-29 06:09:12] 2026-04-29 04:09:07,912 [wrapper] pandaids: 7116402711
[2026-04-29 06:09:12] 2026-04-29 04:09:09,094 [wrapper] cleanup supervisor_pilot 28367 5216
[2026-04-29 06:09:12] 2026-04-29 04:09:09,180 [wrapper] Test setup, not cleaning
[2026-04-29 06:09:12] 2026-04-29 04:09:09,276 [wrapper] apfmon messages muted
[2026-04-29 06:09:12] 2026-04-29 04:09:09,369 [wrapper] ==== wrapper stdout END ====
[2026-04-29 06:09:12] 2026-04-29 04:09:09,478 [wrapper] ==== wrapper stderr END ====
[2026-04-29 06:09:12]  *** Error codes and diagnostics ***
[2026-04-29 06:09:12]     "exeErrorCode": 0,
[2026-04-29 06:09:12]     "pilotErrorCode": 0,
[2026-04-29 06:09:12]  *** Listing of results directory ***
[2026-04-29 06:09:12] total 467852
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc    683926 Apr 28 09:39 pilot3.tar.gz
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc      5631 Apr 28 09:58 queuedata.json
[2026-04-29 06:09:12] -rwx------. 1 boinc boinc     36322 Apr 28 09:58 runpilot2-wrapper.sh
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc       100 Apr 29 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 06:09:12] -rwxr-xr-x. 1 boinc boinc      7986 Apr 29 01:10 run_atlas
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc       105 Apr 29 01:10 job.xml
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc      6307 Apr 29 01:10 init_data.xml
[2026-04-29 06:09:12] -rw-r--r--. 2 boinc boinc 263014377 Apr 29 01:10 EVNT.49863730._000054.pool.root.1
[2026-04-29 06:09:12] -rw-r--r--. 2 boinc boinc     15667 Apr 29 01:10 start_atlas.sh
[2026-04-29 06:09:12] drwxrwx--x. 2 boinc boinc        68 Apr 29 01:10 shared
[2026-04-29 06:09:12] -rw-r--r--. 2 boinc boinc    697412 Apr 29 01:10 input.tar.gz
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc         0 Apr 29 01:10 boinc_lockfile
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc      2575 Apr 29 01:11 pandaJob.out
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc       415 Apr 29 01:17 workernode_map.json
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc   1001138 Apr 29 01:17 agis_schedconf.cvmfs.json
[2026-04-29 06:09:12] drwx------. 5 boinc boinc      4096 Apr 29 01:17 pilot3
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc 207893319 Apr 29 06:06 HITS.49863733._001307.pool.root.1
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc       488 Apr 29 06:06 boinc_task_state.xml
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc      1019 Apr 29 06:07 memory_monitor_summary.json
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc   1512704 Apr 29 06:07 agis_ddmendpoints.agis.ALL.json
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc    413450 Apr 29 06:08 log.49863733._001307.job.log.tgz.1
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc      6345 Apr 29 06:08 heartbeat_new.json
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc      6236 Apr 29 06:08 heartbeat.json
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc        95 Apr 29 06:08 pilot_heartbeat.json
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc      8192 Apr 29 06:08 boinc_mmap_file
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc        28 Apr 29 06:08 wrapper_checkpoint.txt
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc      4883 Apr 29 06:09 pilotlog.txt
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc   1610895 Apr 29 06:09 log.49863733._001307.job.log.1
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc       357 Apr 29 06:09 output.list
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc       410 Apr 29 06:09 runtime_log
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc   2037760 Apr 29 06:09 result.tar.gz
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc      8455 Apr 29 06:09 runtime_log.err
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc       656 Apr 29 06:09 68ae71391344.diag
[2026-04-29 06:09:12] -rw-r--r--. 1 boinc boinc     20615 Apr 29 06:09 stderr.txt
[2026-04-29 06:09:12] HITS file was successfully produced:
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc 207893319 Apr 29 06:06 shared/HITS.pool.root.1
[2026-04-29 06:09:12]  *** Contents of shared directory: ***
[2026-04-29 06:09:12] total 462568
[2026-04-29 06:09:12] -rw-r--r--. 2 boinc boinc 263014377 Apr 29 01:10 ATLAS.root_0
[2026-04-29 06:09:12] -rw-r--r--. 2 boinc boinc     15667 Apr 29 01:10 start_atlas.sh
[2026-04-29 06:09:12] -rw-r--r--. 2 boinc boinc    697412 Apr 29 01:10 input.tar.gz
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc 207893319 Apr 29 06:06 HITS.pool.root.1
[2026-04-29 06:09:12] -rw-------. 1 boinc boinc   2037760 Apr 29 06:09 result.tar.gz
06:09:14 (1194): run_atlas exited; CPU time 71141.739229
06:09:14 (1194): called boinc_finish(0)

</stderr_txt>
]]>

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