Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:40:12 (4148974): wrapper (7.7.26015): starting
20:40:12 (4148974): wrapper: running run_atlas (--nthreads 12)
[2026-04-28 20:40:12] Arguments: --nthreads 12
[2026-04-28 20:40:12] Threads: 12
[2026-04-28 20:40:12] Checking for CVMFS
[2026-04-28 20:40:12] No cvmfs_config command found, will try listing directly
[2026-04-28 20:40:12] CVMFS is ok
[2026-04-28 20:40:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 20:40:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 20:40:12] Further information can be found at the LHC@home message board.
[2026-04-28 20:40:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 20:40:12] Checking for apptainer binary...
[2026-04-28 20:40:12] which: no apptainer in ((null))
[2026-04-28 20:40:12] apptainer is not installed, using version from CVMFS
[2026-04-28 20:40:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 20:40:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot156/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-04-28 20:40:12] apptainer works
[2026-04-28 20:40:12] Set ATHENA_PROC_NUMBER=12
[2026-04-28 20:40:12] Set ATHENA_CORE_NUMBER=12
[2026-04-28 20:40:12] Starting ATLAS job with PandaID=7105445980
[2026-04-28 20:40:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot156/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 21:31:35]  *** The last 200 lines of the pilot log: ***
[2026-04-28 21:31:35]  surl=/var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/log.49820375._011589.job.log.tgz.1
[2026-04-28 21:31:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/11/log.49820375._011589.job.log.tgz.1
[2026-04-28 21:31:35]  workdir=None
[2026-04-28 21:31:35] ]
[2026-04-28 21:31:35] 2026-04-28 19:30:59,642 | INFO     | transferring file log.49820375._011589.job.log.tgz.1 from /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/log.49820375._011589.job.log.tgz.1 to /var/lib/
[2026-04-28 21:31:35] 2026-04-28 19:30:59,643 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/log.49820375._011589.job.log.tgz.1 /var/lib/boinc/var/slot156/slots/1/
[2026-04-28 21:31:35] 2026-04-28 19:30:59,656 | INFO     | adding to output.list: log.49820375._011589.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/11/log.49820375._011589.job.log.tg
[2026-04-28 21:31:35] 2026-04-28 19:30:59,656 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-28 21:31:35] 2026-04-28 19:30:59,656 | INFO     | summary of transferred files:
[2026-04-28 21:31:35] 2026-04-28 19:30:59,656 | INFO     |  -- lfn=log.49820375._011589.job.log.tgz.1, status_code=0, status=transferred
[2026-04-28 21:31:35] 2026-04-28 19:30:59,657 | INFO     | stage-out finished correctly
[2026-04-28 21:31:35] 2026-04-28 19:31:00,317 | WARNING  | process 4178687 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 21:31:35] 2026-04-28 19:31:00,317 | INFO     | using path: /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,318 | INFO     | using path: /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,318 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-28 21:31:35] 2026-04-28 19:31:00,318 | WARNING  | maxPSS not found in memory monitor output
[2026-04-28 21:31:35] 2026-04-28 19:31:00,318 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4515574 B
[2026-04-28 21:31:35] 2026-04-28 19:31:00,318 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15614 B
[2026-04-28 21:31:35] 2026-04-28 19:31:00,318 | INFO     | executing command: df -mP /var/lib/boinc/var/slot156/slots/1
[2026-04-28 21:31:35] 2026-04-28 19:31:00,333 | INFO     | sufficient remaining disk space (24119345152 B)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,333 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,334 | INFO     | size of work directory /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980: 4804111 B (within 5033164800 B limit)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,334 | INFO     | pfn file=/var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/HITS.49820375._011589.pool.root.1 does not exist (skip from workdir size calculation)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,334 | INFO     | total size of present files: 0 B (workdir size: 4804111 B)
[2026-04-28 21:31:35] 2026-04-28 19:31:00,334 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/HITS.49820375._011589.pool.root.1 since it does not exist
[2026-04-28 21:31:35] 2026-04-28 19:31:00,638 | INFO     | number of running child processes to parent process 4178687: 1
[2026-04-28 21:31:35] 2026-04-28 19:31:00,638 | INFO     | maximum number of monitored processes: 6
[2026-04-28 21:31:35] 2026-04-28 19:31:01,943 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 21:31:35] 2026-04-28 19:31:03,141 | INFO     | monitor loop #228: job 0:7105445980 is in state 'finished'
[2026-04-28 21:31:35] 2026-04-28 19:31:03,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,211 | INFO     | job 7105445980 has state=finished
[2026-04-28 21:31:35] 2026-04-28 19:31:03,211 | INFO     | preparing for final server update for job 7105445980 in state='finished'
[2026-04-28 21:31:35] 2026-04-28 19:31:03,212 | INFO     | reading metadata from: /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/jobReport.json
[2026-04-28 21:31:35] 2026-04-28 19:31:03,213 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot156/slots/1/workernode_map.json
[2026-04-28 21:31:35] 2026-04-28 19:31:03,213 | INFO     | this job has now completed (state=finished)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,213 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,213 | INFO     | log transfer has been attempted: DONE
[2026-04-28 21:31:35] 2026-04-28 19:31:03,214 | INFO     | job 7105445980 has finished - writing final server update
[2026-04-28 21:31:35] 2026-04-28 19:31:03,214 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2999692/.job.ad'
[2026-04-28 21:31:35] 2026-04-28 19:31:03,214 | INFO     | total number of processed events: 400 (read)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,231 | INFO     | using path: /var/lib/boinc/var/slot156/slots/1/PanDA_Pilot-7105445980/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,232 | INFO     | extracted standard info from prmon json
[2026-04-28 21:31:35] 2026-04-28 19:31:03,232 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 21:31:35] 2026-04-28 19:31:03,232 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 21:31:35] 2026-04-28 19:31:03,232 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | fitting pss+swap vs Time
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | sum of square deviations: 24640462.0
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | sum of deviations: -6217973.999999981
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | mean x (centered): 0.0
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | mean y: 2777936.302325581
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | intersect: 2777936.302325581
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | chi2: 0.0011928174391873942
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | current memory leak: -0.25 B/s (using 43 data points, chi2=0.00)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | could have reported an average CPU frequency of 3628 MHz (5 samples)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | ..............................
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . Timing measurements:
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . get job = 0 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . initial setup = 4 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . payload setup = 7 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . stage-in = 0 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . payload execution = 3012 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,233 | INFO     | . stage-out = 0 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,234 | INFO     | . log creation = 0 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,234 | INFO     | ..............................
[2026-04-28 21:31:35] 2026-04-28 19:31:03,279 | INFO     | 
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | job summary report
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | --------------------------------------------------
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | PanDA job id: 7105445980
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | task id: 49820375
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | errors: (none)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | pilot state: finished 
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | transexitcode: 0
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | exeerrorcode: 0
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | exeerrordiag: 
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | exitcode: 0
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | exitmsg: OK
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | cpuconsumptiontime: 32730 s
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | nevents: 400
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | neventsw: 0
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | pid: 4178687
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | pgrp: 4178687
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | corecount: 12
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | event service: False
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | sizes: {0: 2282474, 11: 2282474, 3022: 2307908, 3023: 2307907, 3024: 2316985, 3027: 2317069, 3028: 2317423}
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | --------------------------------------------------
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | 
[2026-04-28 21:31:35] 2026-04-28 19:31:03,280 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot156/slots/1
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | job 7105445980 has completed (purged errors)
[2026-04-28 21:31:35] 2026-04-28 19:31:03,301 | INFO     | overall cleanup function is called
[2026-04-28 21:31:35] 2026-04-28 19:31:04,308 | INFO     | --- collectZombieJob: --- 10, [4178687]
[2026-04-28 21:31:35] 2026-04-28 19:31:04,308 | INFO     | zombie collector waiting for pid 4178687
[2026-04-28 21:31:35] 2026-04-28 19:31:04,308 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 21:31:35] 2026-04-28 19:31:04,308 | INFO     | collected zombie processes
[2026-04-28 21:31:35] 2026-04-28 19:31:04,308 | INFO     | will attempt to kill all subprocesses of pid=4178687
[2026-04-28 21:31:35] 2026-04-28 19:31:04,616 | INFO     | process IDs to be killed: [4178687] (in reverse order)
[2026-04-28 21:31:35] 2026-04-28 19:31:04,726 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 21:31:35] 2026-04-28 19:31:04,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 21:31:35] 2026-04-28 19:31:04,749 | INFO     | did not find any defunct processes belonging to 4178687
[2026-04-28 21:31:35] 2026-04-28 19:31:04,769 | INFO     | did not find any defunct processes belonging to 4178687
[2026-04-28 21:31:35] 2026-04-28 19:31:04,769 | INFO     | Ready for new job
[2026-04-28 21:31:35] 2026-04-28 19:31:04,771 | INFO     | ***************************************
[2026-04-28 21:31:35] 2026-04-28 19:31:04,771 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 21:31:35] 2026-04-28 19:31:04,771 | INFO     | ***************************************
[2026-04-28 21:31:35] 2026-04-28 19:31:04,771 | INFO     | 
[2026-04-28 21:31:35] 2026-04-28 19:31:04,776 | INFO     | architecture information:
[2026-04-28 21:31:35] 2026-04-28 19:31:04,776 | INFO     | executing command: cat /etc/os-release
[2026-04-28 21:31:35] 2026-04-28 19:31:04,792 | INFO     | cat /etc/os-release:
[2026-04-28 21:31:35] NAME="CentOS Linux"
[2026-04-28 21:31:35] VERSION="7 (Core)"
[2026-04-28 21:31:35] ID="centos"
[2026-04-28 21:31:35] ID_LIKE="rhel fedora"
[2026-04-28 21:31:35] VERSION_ID="7"
[2026-04-28 21:31:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 21:31:35] ANSI_COLOR="0;31"
[2026-04-28 21:31:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 21:31:35] HOME_URL="https://www.centos.org/"
[2026-04-28 21:31:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 21:31:35] 
[2026-04-28 21:31:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 21:31:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 21:31:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 21:31:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 21:31:35] 
[2026-04-28 21:31:35] 2026-04-28 19:31:04,792 | INFO     | ***************************************
[2026-04-28 21:31:35] 2026-04-28 19:31:05,295 | INFO     | executing command: df -mP /var/lib/boinc/var/slot156/slots/1
[2026-04-28 21:31:35] 2026-04-28 19:31:05,313 | INFO     | sufficient remaining disk space (26201817088 B)
[2026-04-28 21:31:35] 2026-04-28 19:31:05,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 21:31:35] 2026-04-28 19:31:05,313 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 21:31:35] 2026-04-28 19:31:05,313 | INFO     | update_server=False
[2026-04-28 21:31:35] 2026-04-28 19:31:05,313 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 21:31:35] 2026-04-28 19:31:05,314 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 21:31:35] 2026-04-28 19:31:05,644 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-28 21:31:35] 2026-04-28 19:31:05,644 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-28 21:31:35] 2026-04-28 19:31:05,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 21:31:35] 2026-04-28 19:31:05,645 | INFO     | will abort loop
[2026-04-28 21:31:35] 2026-04-28 19:31:06,318 | INFO     | [job] retrieve thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:06,334 | INFO     | all data control threads have been joined
[2026-04-28 21:31:35] 2026-04-28 19:31:06,595 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:06,606 | INFO     | all job control threads have been joined
[2026-04-28 21:31:35] 2026-04-28 19:31:06,650 | INFO     | [job] job monitor thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:06,713 | INFO     | all payload control threads have been joined
[2026-04-28 21:31:35] 2026-04-28 19:31:06,797 | INFO     | [payload] failed_post thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,090 | INFO     | [payload] validate_post thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,116 | INFO     | [job] validate thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,319 | INFO     | [data] copytool_out thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,339 | INFO     | [data] control thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,393 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,495 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,612 | INFO     | [job] control thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,613 | INFO     | [data] copytool_in thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,703 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,718 | INFO     | [payload] control thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:07,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 21:31:35] 2026-04-28 19:31:08,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 21:31:35] 2026-04-28 19:31:09,294 | INFO     | [job] queue monitor thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:12,003 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 21:31:35] 2026-04-28 19:31:28,430 | INFO     | [monitor] cgroup control has ended
[2026-04-28 21:31:35] 2026-04-28 19:31:28,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22480846382912)>', '<ExcThread(monitor, started 22480613033728)>']
[2026-04-28 21:31:35] 2026-04-28 19:31:33,631 | INFO     | all workflow threads have been joined
[2026-04-28 21:31:35] 2026-04-28 19:31:33,632 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 21:31:35] 2026-04-28 19:31:33,632 | INFO     | traces error code: 0
[2026-04-28 21:31:35] 2026-04-28 19:31:33,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 21:31:35] 2026-04-28 19:31:34,983 | INFO     | PID=4158084 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 21:31:35] 2026-04-28 19:31:34,983 | INFO     | .. there are 15 such processes running
[2026-04-28 21:31:35] 2026-04-28 19:31:34,984 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 21:31:35] 2026-04-28 19:31:34,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 21:31:35] 2026-04-28 19:31:34,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 21:31:35] 2026-04-28 19:31:34,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 21:31:35] 2026-04-28 19:31:34,985 | INFO     | [monitor] control thread has ended
[2026-04-28 21:31:35] 2026-04-28 19:31:35,102 [wrapper] ==== pilot stdout END ====
[2026-04-28 21:31:35] 2026-04-28 19:31:35,104 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 21:31:35] 2026-04-28 19:31:35,106 [wrapper] pilotpid: 4158084
[2026-04-28 21:31:35] 2026-04-28 19:31:35,108 [wrapper] Pilot exit status: 0
[2026-04-28 21:31:35] 2026-04-28 19:31:35,114 [wrapper] pandaids: 7105445980
[2026-04-28 21:31:35] 2026-04-28 19:31:35,216 [wrapper] cleanup supervisor_pilot  219832 4158085
[2026-04-28 21:31:35] 2026-04-28 19:31:35,218 [wrapper] Test setup, not cleaning
[2026-04-28 21:31:35] 2026-04-28 19:31:35,220 [wrapper] apfmon messages muted
[2026-04-28 21:31:35] 2026-04-28 19:31:35,222 [wrapper] ==== wrapper stdout END ====
[2026-04-28 21:31:35] 2026-04-28 19:31:35,223 [wrapper] ==== wrapper stderr END ====
[2026-04-28 21:31:35]  *** Error codes and diagnostics ***
[2026-04-28 21:31:35]     "exeErrorCode": 0,
[2026-04-28 21:31:35]     "pilotErrorCode": 0,
[2026-04-28 21:31:35]  *** Listing of results directory ***
[2026-04-28 21:31:35] total 2474280
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc     683926 Apr 28 05:56 pilot3.tar.gz
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc       5631 Apr 28 06:12 queuedata.json
[2026-04-28 21:31:35] -rwx------. 1 boinc boinc      36322 Apr 28 06:12 runpilot2-wrapper.sh
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc        100 Apr 28 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 21:31:35] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 20:40 run_atlas
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc        105 Apr 28 20:40 job.xml
[2026-04-28 21:31:35] -rw-r--r--. 2 boinc boinc     697429 Apr 28 20:40 input.tar.gz
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc       6630 Apr 28 20:40 init_data.xml
[2026-04-28 21:31:35] -rw-r--r--. 2 boinc boinc 2254743933 Apr 28 20:40 EVNT.49820373._000043.pool.root.1
[2026-04-28 21:31:35] -rw-r--r--. 2 boinc boinc      15667 Apr 28 20:40 start_atlas.sh
[2026-04-28 21:31:35] drwxrwx--x. 2 boinc boinc       4096 Apr 28 20:40 shared
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc          0 Apr 28 20:40 boinc_lockfile
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc       2585 Apr 28 20:40 pandaJob.out
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc    1001831 Apr 28 20:40 agis_schedconf.cvmfs.json
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc    1512704 Apr 28 20:40 agis_ddmendpoints.agis.ALL.json
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc        445 Apr 28 20:40 workernode_map.json
[2026-04-28 21:31:35] drwx------. 5 boinc boinc       4096 Apr 28 20:40 pilot3
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc        487 Apr 28 21:30 boinc_task_state.xml
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc  273400421 Apr 28 21:30 HITS.49820375._011589.pool.root.1
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc       1030 Apr 28 21:30 memory_monitor_summary.json
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc     358146 Apr 28 21:30 log.49820375._011589.job.log.tgz.1
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc       6375 Apr 28 21:31 heartbeat_new.json
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc       6266 Apr 28 21:31 heartbeat.json
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc       8192 Apr 28 21:31 boinc_mmap_file
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc         26 Apr 28 21:31 wrapper_checkpoint.txt
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc        823 Apr 28 21:31 pilotlog.txt
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc         95 Apr 28 21:31 pilot_heartbeat.json
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc     328045 Apr 28 21:31 log.49820375._011589.job.log.1
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc        357 Apr 28 21:31 output.list
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc        410 Apr 28 21:31 runtime_log
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc     706560 Apr 28 21:31 result.tar.gz
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc       8846 Apr 28 21:31 runtime_log.err
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc        663 Apr 28 21:31 33c2956d85fe.diag
[2026-04-28 21:31:35] -rw-r--r--. 1 boinc boinc      22501 Apr 28 21:31 stderr.txt
[2026-04-28 21:31:35] HITS file was successfully produced:
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc 273400421 Apr 28 21:30 shared/HITS.pool.root.1
[2026-04-28 21:31:35]  *** Contents of shared directory: ***
[2026-04-28 21:31:35] total 2470296
[2026-04-28 21:31:35] -rw-r--r--. 2 boinc boinc     697429 Apr 28 20:40 input.tar.gz
[2026-04-28 21:31:35] -rw-r--r--. 2 boinc boinc 2254743933 Apr 28 20:40 ATLAS.root_0
[2026-04-28 21:31:35] -rw-r--r--. 2 boinc boinc      15667 Apr 28 20:40 start_atlas.sh
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc  273400421 Apr 28 21:30 HITS.pool.root.1
[2026-04-28 21:31:35] -rw-------. 1 boinc boinc     706560 Apr 28 21:31 result.tar.gz
21:31:36 (4148974): run_atlas exited; CPU time 32817.051806
21:31:36 (4148974): called boinc_finish(0)

</stderr_txt>
]]>

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