Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
2026-04-28 14:09:56 (55545): vboxwrapper version 26210
2026-04-28 14:09:57 (55545): BOINC client version: 8.2.9
2026-04-28 14:09:57 (55545): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2026-04-28 14:09:57 (55545): Detected: Sandbox Configuration Enabled
2026-04-28 14:09:57 (55545): Successfully copied 'init_data.xml' to the shared directory.
2026-04-28 14:09:57 (55545): Create VM. (boinc_3c2a5a2fc24a87ab, slot#0)
2026-04-28 14:09:57 (55545): Setting Memory Size for VM. (4200MB)
2026-04-28 14:09:57 (55545): Setting CPU Count for VM. (2)
2026-04-28 14:09:57 (55545): Setting Chipset Options for VM.
2026-04-28 14:09:57 (55545): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-04-28 14:09:57 (55545): Setting Boot Options for VM.
2026-04-28 14:09:57 (55545): Setting Network Configuration for NAT. (Driver: virtio)
2026-04-28 14:09:57 (55545): Enabling VM Network Access.
2026-04-28 14:09:57 (55545): Disabling USB Support for VM.
2026-04-28 14:09:57 (55545): Disabling COM Port Support for VM.
2026-04-28 14:09:57 (55545): Disabling Audio Support for VM.
2026-04-28 14:09:57 (55545): Disabling Clipboard Support for VM.
2026-04-28 14:09:57 (55545): Disabling Drag and Drop Support for VM.
2026-04-28 14:09:57 (55545): Adding storage controller(s) to VM.
2026-04-28 14:09:57 (55545): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-04-28 14:09:58 (55545): Adding VirtualBox Guest Additions to VM.
2026-04-28 14:09:58 (55545): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-04-28 14:09:58 (55545): forwarding host port 51750 to guest port 80
2026-04-28 14:09:58 (55545): Enabling remote desktop for VM.
2026-04-28 14:09:58 (55545): Enabling shared directory for VM.
2026-04-28 14:09:58 (55545): Starting VM using VBoxManage interface. (boinc_3c2a5a2fc24a87ab, slot#0)
2026-04-28 14:10:02 (55545): Successfully started VM. (PID = '55621')
2026-04-28 14:10:02 (55545): Reporting VM Process ID to BOINC.
2026-04-28 14:10:02 (55545): Guest Log: BIOS: VirtualBox 7.1.8
2026-04-28 14:10:02 (55545): Guest Log: CPUID EDX: 0x178bfbff
2026-04-28 14:10:02 (55545): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-04-28 14:10:02 (55545): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-04-28 14:10:02 (55545): VM state change detected. (old = 'poweredoff', new = 'running')
2026-04-28 14:10:02 (55545): Detected: Web Application Enabled (http://localhost:51750)
2026-04-28 14:10:02 (55545): Detected: Remote Desktop Enabled (localhost:51751)
2026-04-28 14:10:02 (55545): Preference change detected
2026-04-28 14:10:02 (55545): Setting CPU throttle for VM. (25%)
2026-04-28 14:10:02 (55545): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-28 14:10:04 (55545): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-04-28 14:10:04 (55545): Guest Log: BIOS: Booting from Hard Disk...
2026-04-28 14:10:09 (55545): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-04-28 14:10:09 (55545): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-04-28 14:10:09 (55545): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-04-28 14:10:19 (55545): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-04-28 14:10:19 (55545): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-04-28 14:10:41 (55545): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000152 main     Log opened 2026-04-28T12:10:39.677016000Z
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000253 main     OS Product: Linux
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000288 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000321 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000355 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000356 main     Process ID: 1271
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.000356 main     Package type: LINUX_64BITS_GENERIC
2026-04-28 14:10:41 (55545): Guest Log: 00:00:00.001441 main     5.2.32 r132073 started. Verbose level = 0
2026-04-28 14:10:42 (55545): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-04-28 14:10:42 (55545): Guest Log: [INFO] Mounting shared directory
2026-04-28 14:10:42 (55545): Guest Log: [INFO] Checking for init_data.xml
2026-04-28 14:10:48 (55545): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-04-28 14:10:48 (55545): Guest Log: [INFO] Detected branch: prod
2026-04-28 14:10:48 (55545): Guest Log: This is the prod version of the ATLAS job wrapper
2026-04-28 14:10:48 (55545): Guest Log: Copying input files
2026-04-28 14:12:13 (55545): Guest Log: Copied input files into RunAtlas.
2026-04-28 14:12:14 (55545): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-04-28 14:12:14 (55545): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-04-28 14:12:14 (55545): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-04-28 14:12:14 (55545): Guest Log: Further information can be found at the LHC@home message board.
2026-04-28 14:12:26 (55545): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-04-28 14:12:27 (55545): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-04-28 14:12:27 (55545): Guest Log: 2.6.3.0 1547 1 32192 158965 4 1 3117648 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-04-28 14:12:29 (55545): Guest Log: copied the webapp to /var/www
2026-04-28 14:12:29 (55545): Guest Log: ATHENA_PROC_NUMBER=2
2026-04-28 14:12:29 (55545): Guest Log: ATHENA_CORE_NUMBER=2
2026-04-28 14:12:29 (55545): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-04-28 14:12:30 (55545): Guest Log:  *** Starting ATLAS job. (PandaID=7116327313 taskID=49820375) ***
2026-04-28 15:49:43 (55545): Status Report: Elapsed Time: '6000.000000'
2026-04-28 15:49:43 (55545): Status Report: CPU Time: '6622.870000'
2026-04-28 17:29:01 (55545): Status Report: Elapsed Time: '12000.000000'
2026-04-28 17:29:01 (55545): Status Report: CPU Time: '14179.190000'
2026-04-28 19:08:26 (55545): Status Report: Elapsed Time: '18000.000000'
2026-04-28 19:08:26 (55545): Status Report: CPU Time: '21770.810000'
2026-04-28 20:09:14 (55545): VM state change detected. (old = 'running', new = 'paused')
2026-04-28 20:09:35 (55545): VM state change detected. (old = 'paused', new = 'running')
2026-04-28 20:48:17 (55545): Status Report: Elapsed Time: '24000.000000'
2026-04-28 20:48:17 (55545): Status Report: CPU Time: '29331.150000'
2026-04-28 22:27:44 (55545): Status Report: Elapsed Time: '30000.150018'
2026-04-28 22:27:44 (55545): Status Report: CPU Time: '36840.960000'
2026-04-28 23:20:29 (55545): Guest Log:  *** Job finished ***
2026-04-28 23:20:29 (55545): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:07,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:07,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:16,974 | INFO     | [monitor] cgroup control has ended
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:18,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776587659072)>', '<ExcThread(monitor, started 139775541503744)>']
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:19,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:19,146 | INFO     | [monitor] control thread has ended
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,307 | INFO     | all workflow threads have been joined
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,307 | INFO     | end of generic workflow (traces error code: 0)
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,308 | INFO     | traces error code: 0
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,462 [wrapper] ==== pilot stdout END ====
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,468 [wrapper] ==== wrapper stdout RESUME ====
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,555 [wrapper] pilotpid: 5956
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,567 [wrapper] Pilot exit status: 0
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,769 [wrapper] pandaids: 7116327313
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,877 [wrapper] cleanup supervisor_pilot  2386 5957
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,883 [wrapper] Test setup, not cleaning
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,889 [wrapper] apfmon messages muted
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,967 [wrapper] ==== wrapper stdout END ====
2026-04-28 23:20:29 (55545): Guest Log: 2026-04-28 21:20:23,973 [wrapper] ==== wrapper stderr END ====
2026-04-28 23:20:29 (55545): Guest Log:  *** Error codes and diagnostics ***
2026-04-28 23:20:29 (55545): Guest Log:     "exeErrorCode": 0,
2026-04-28 23:20:29 (55545): Guest Log:     "pilotErrorCode": 0,
2026-04-28 23:20:29 (55545): Guest Log:  *** Listing of results directory ***
2026-04-28 23:20:29 (55545): Guest Log: total 285028
2026-04-28 23:20:29 (55545): Guest Log: -rwx------. 1 atlas atlas     36322 Apr 27 23:10 runpilot2-wrapper.sh
2026-04-28 23:20:29 (55545): Guest Log: -rw-r--r--. 1 atlas atlas      5631 Apr 28 01:53 queuedata.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-r--r--. 1 atlas atlas    683926 Apr 28 01:53 pilot3.tar.gz
2026-04-28 23:20:29 (55545): Guest Log: -rw-r-----. 1 atlas atlas     15667 Apr 28 12:10 start_atlas.sh
2026-04-28 23:20:29 (55545): Guest Log: -rw-r-----. 1 atlas atlas    697426 Apr 28 12:10 input.tar.gz
2026-04-28 23:20:29 (55545): Guest Log: -rw-r--r--. 1 atlas atlas      8205 Apr 28 12:10 init_data.xml
2026-04-28 23:20:29 (55545): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 28 12:12 EVNT.49820373._000055.pool.root.1 -> /data/./ATLAS.root_0
2026-04-28 23:20:29 (55545): Guest Log: -rw-r--r--. 1 atlas atlas      2584 Apr 28 12:12 pandaJob.out
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas    993621 Apr 28 12:13 agis_schedconf.cvmfs.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas       410 Apr 28 12:14 workernode_map.json
2026-04-28 23:20:29 (55545): Guest Log: drwx------. 5 atlas atlas      4096 Apr 28 12:14 pilot3
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas 281037073 Apr 28 21:17 HITS.49820375._017843.pool.root.1
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas        95 Apr 28 21:19 pilot_heartbeat.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas      1027 Apr 28 21:19 memory_monitor_summary.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas   1512704 Apr 28 21:19 agis_ddmendpoints.agis.ALL.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas    514747 Apr 28 21:19 log.49820375._017843.job.log.tgz.1
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas      6341 Apr 28 21:19 heartbeat_new.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas      6232 Apr 28 21:19 heartbeat.json
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas      4804 Apr 28 21:20 pilotlog.txt
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas   2867700 Apr 28 21:20 log.49820375._017843.job.log.1
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas       357 Apr 28 21:20 output.list
2026-04-28 23:20:29 (55545): Guest Log: -rw-r--r--. 1 atlas atlas       410 Apr 28 21:20 runtime_log
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas   3399680 Apr 28 21:20 result.tar.gz
2026-04-28 23:20:29 (55545): Guest Log: -rw-r--r--. 1 atlas atlas      8356 Apr 28 21:20 runtime_log.err
2026-04-28 23:20:29 (55545): Guest Log: -rw-------. 1 atlas atlas       655 Apr 28 21:20 ecd97fbf8861.diag
2026-04-28 23:20:30 (55545): Guest Log: Looking for outputfile HITS.49820375._017843.pool.root.1
2026-04-28 23:20:30 (55545): Guest Log: HITS file was successfully produced
2026-04-28 23:20:30 (55545): Guest Log: -rw-------. 1 atlas atlas 281037073 Apr 28 21:17 /home/atlas/RunAtlas/HITS.49820375._017843.pool.root.1
2026-04-28 23:20:30 (55545): Guest Log: Successfully finished the ATLAS job!
2026-04-28 23:20:30 (55545): Guest Log: Copying the results back to the shared directory!
2026-04-28 23:20:30 (55545): Guest Log:  *** Contents of shared directory: ***
2026-04-28 23:20:30 (55545): Guest Log: total 2189312
2026-04-28 23:20:30 (55545): Guest Log: -rw-rw----. 1 root root 2223810499 Apr 28 12:09 ATLAS.root_0
2026-04-28 23:20:30 (55545): Guest Log: -rw-rw-r--. 1 root root       8205 Apr 28 12:09 init_data.xml
2026-04-28 23:20:31 (55545): Guest Log: -rw-rw----. 1 root root     697426 Apr 28 12:09 input.tar.gz
2026-04-28 23:20:31 (55545): Guest Log: -rw-r--r--. 1 root root    3399680 Apr 28  2026 result.tar.gz
2026-04-28 23:20:31 (55545): Guest Log: -rw-rw----. 1 root root      15667 Apr 28 12:09 start_atlas.sh
2026-04-28 23:20:31 (55545): Guest Log:  *** Success! Shutting down the machine. ***
2026-04-28 23:20:31 (55545): VM Completion File Detected.
2026-04-28 23:20:31 (55545): Powering off VM.
2026-04-28 23:20:32 (55545): Successfully stopped VM.
2026-04-28 23:20:32 (55545): Deregistering VM. (boinc_3c2a5a2fc24a87ab, slot#0)
2026-04-28 23:20:32 (55545): Removing network bandwidth throttle group from VM.
2026-04-28 23:20:32 (55545): Removing VM from VirtualBox.
2026-04-28 23:20:37 (55545): called boinc_finish(0)

</stderr_txt>
]]>

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