Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:53:36 (357293): wrapper (7.7.26015): starting
18:53:36 (357293): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 18:53:36] Arguments: --nthreads 4
[2026-04-28 18:53:36] Threads: 4
[2026-04-28 18:53:36] Checking for CVMFS
[2026-04-28 18:53:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 18:53:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 18:53:36] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 18:53:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 18:53:36] 2.9.2.0 4129081 2981 91068 158974 1 50 20995500 36864000 0 130560 0 1548903 99.985 113883 9683 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-28 18:53:36] CVMFS is ok
[2026-04-28 18:53:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 18:53:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 18:53:36] Further information can be found at the LHC@home message board.
[2026-04-28 18:53:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 18:53:36] Checking for apptainer binary...
[2026-04-28 18:53:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 18:53:36] Running /usr/bin/apptainer --version
[2026-04-28 18:53:36] apptainer version 1.4.1-1.1
[2026-04-28 18:53:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 18:53:36] magicA250
[2026-04-28 18:53:36] apptainer works
[2026-04-28 18:53:36] Set ATHENA_PROC_NUMBER=4
[2026-04-28 18:53:36] Set ATHENA_CORE_NUMBER=4
[2026-04-28 18:53:37] Starting ATLAS job with PandaID=7116364915
[2026-04-28 18:53:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 21:05:08]  *** The last 200 lines of the pilot log: ***
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | job 7116364915 has completed (purged errors)
[2026-04-28 21:05:08] 2026-04-28 19:04:11,544 | INFO     | overall cleanup function is called
[2026-04-28 21:05:08] 2026-04-28 19:04:12,551 | INFO     | --- collectZombieJob: --- 10, [365908]
[2026-04-28 21:05:08] 2026-04-28 19:04:12,551 | INFO     | zombie collector waiting for pid 365908
[2026-04-28 21:05:08] 2026-04-28 19:04:12,551 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 21:05:08] 2026-04-28 19:04:12,551 | INFO     | collected zombie processes
[2026-04-28 21:05:08] 2026-04-28 19:04:12,551 | INFO     | will attempt to kill all subprocesses of pid=365908
[2026-04-28 21:05:08] 2026-04-28 19:04:12,584 | INFO     | process IDs to be killed: [365908] (in reverse order)
[2026-04-28 21:05:08] 2026-04-28 19:04:12,618 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 21:05:08] 2026-04-28 19:04:12,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 21:05:08] 2026-04-28 19:04:12,623 | INFO     | did not find any defunct processes belonging to 365908
[2026-04-28 21:05:08] 2026-04-28 19:04:12,628 | INFO     | did not find any defunct processes belonging to 365908
[2026-04-28 21:05:08] 2026-04-28 19:04:12,628 | INFO     | Ready for new job
[2026-04-28 21:05:08] 2026-04-28 19:04:12,629 | INFO     | ***************************************
[2026-04-28 21:05:08] 2026-04-28 19:04:12,629 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 21:05:08] 2026-04-28 19:04:12,629 | INFO     | ***************************************
[2026-04-28 21:05:08] 2026-04-28 19:04:12,629 | INFO     | 
[2026-04-28 21:05:08] 2026-04-28 19:04:12,630 | INFO     | architecture information:
[2026-04-28 21:05:08] 2026-04-28 19:04:12,630 | INFO     | executing command: cat /etc/os-release
[2026-04-28 21:05:08] 2026-04-28 19:04:12,645 | INFO     | cat /etc/os-release:
[2026-04-28 21:05:08] NAME="CentOS Linux"
[2026-04-28 21:05:08] VERSION="7 (Core)"
[2026-04-28 21:05:08] ID="centos"
[2026-04-28 21:05:08] ID_LIKE="rhel fedora"
[2026-04-28 21:05:08] VERSION_ID="7"
[2026-04-28 21:05:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 21:05:08] ANSI_COLOR="0;31"
[2026-04-28 21:05:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 21:05:08] HOME_URL="https://www.centos.org/"
[2026-04-28 21:05:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 21:05:08] 
[2026-04-28 21:05:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 21:05:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 21:05:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 21:05:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 21:05:08] 
[2026-04-28 21:05:08] 2026-04-28 19:04:12,645 | INFO     | ***************************************
[2026-04-28 21:05:08] 2026-04-28 19:04:12,656 | WARNING  | process 365908 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 21:05:08] 2026-04-28 19:04:12,686 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 21:05:08] 2026-04-28 19:04:12,715 | INFO     | number of running child processes to parent process 365908: 1
[2026-04-28 21:05:08] 2026-04-28 19:04:12,715 | INFO     | maximum number of monitored processes: 6
[2026-04-28 21:05:08] 2026-04-28 19:04:12,715 | INFO     | aborting job monitoring since job object (job id=7116364915) has expired
[2026-04-28 21:05:08] 2026-04-28 19:04:13,148 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-28 21:05:08] 2026-04-28 19:04:13,165 | INFO     | sufficient remaining disk space (330303537152 B)
[2026-04-28 21:05:08] 2026-04-28 19:04:13,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 21:05:08] 2026-04-28 19:04:13,165 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 21:05:08] 2026-04-28 19:04:13,165 | INFO     | update_server=False
[2026-04-28 21:05:08] 2026-04-28 19:04:13,165 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 21:05:08] 2026-04-28 19:04:13,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 21:05:08] 2026-04-28 19:04:13,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 21:05:08] 2026-04-28 19:04:13,166 | INFO     | will abort loop
[2026-04-28 21:05:08] 2026-04-28 19:04:13,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 21:05:08] 2026-04-28 19:04:13,306 | INFO     | all payload control threads have been joined
[2026-04-28 21:05:08] 2026-04-28 19:04:13,752 | INFO     | all data control threads have been joined
[2026-04-28 21:05:08] 2026-04-28 19:04:14,170 | INFO     | [job] job monitor thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,171 | INFO     | [job] retrieve thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,171 | INFO     | [job] queue monitor thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,276 | INFO     | all job control threads have been joined
[2026-04-28 21:05:08] 2026-04-28 19:04:14,312 | INFO     | [payload] control thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,629 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,688 | INFO     | [payload] failed_post thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,758 | INFO     | [data] control thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,842 | INFO     | [job] validate thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:14,975 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:15,158 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:15,171 | INFO     | [data] copytool_out thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:15,280 | INFO     | [job] control thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:15,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 21:05:08] 2026-04-28 19:04:15,455 | INFO     | [data] copytool_in thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:15,511 | INFO     | [payload] validate_post thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:19,346 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:23,750 | INFO     | job.realtimelogging is not enabled
[2026-04-28 21:05:08] 2026-04-28 19:04:24,756 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 21:05:08] 2026-04-28 19:04:42,689 | INFO     | PID=361399 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-28 21:05:08] 2026-04-28 19:04:42,690 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 21:05:08] 2026-04-28 19:04:42,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 21:05:08] 2026-04-28 19:04:42,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 21:05:08] 2026-04-28 19:05:02,958 | INFO     | [monitor] cgroup control has ended
[2026-04-28 21:05:08] 2026-04-28 19:05:03,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140593254491968)>', '<ExcThread(monitor, started 140592885503744)>']
[2026-04-28 21:05:08] 2026-04-28 19:05:03,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 21:05:08] 2026-04-28 19:05:03,802 | INFO     | [monitor] control thread has ended
[2026-04-28 21:05:08] 2026-04-28 19:05:08,328 | INFO     | all workflow threads have been joined
[2026-04-28 21:05:08] 2026-04-28 19:05:08,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 21:05:08] 2026-04-28 19:05:08,329 | INFO     | traces error code: 0
[2026-04-28 21:05:08] 2026-04-28 19:05:08,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 21:05:08] 2026-04-28 19:05:08,408 [wrapper] ==== pilot stdout END ====
[2026-04-28 21:05:08] 2026-04-28 19:05:08,412 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 21:05:08] 2026-04-28 19:05:08,417 [wrapper] pilotpid: 361399
[2026-04-28 21:05:08] 2026-04-28 19:05:08,421 [wrapper] Pilot exit status: 0
[2026-04-28 21:05:08] 2026-04-28 19:05:08,435 [wrapper] pandaids: 7116364915
[2026-04-28 21:05:08] 2026-04-28 19:05:08,459 [wrapper] cleanup supervisor_pilot  372152 361400
[2026-04-28 21:05:08] 2026-04-28 19:05:08,463 [wrapper] Test setup, not cleaning
[2026-04-28 21:05:08] 2026-04-28 19:05:08,467 [wrapper] apfmon messages muted
[2026-04-28 21:05:08] 2026-04-28 19:05:08,471 [wrapper] ==== wrapper stdout END ====
[2026-04-28 21:05:08] 2026-04-28 19:05:08,475 [wrapper] ==== wrapper stderr END ====
[2026-04-28 21:05:08]  *** Error codes and diagnostics ***
[2026-04-28 21:05:08]     "exeErrorCode": 0,
[2026-04-28 21:05:08]     "pilotErrorCode": 0,
[2026-04-28 21:05:08]  *** Listing of results directory ***
[2026-04-28 21:05:08] total 2443144
[2026-04-28 21:05:08] -rwx------ 1 boinc boinc      36322 Apr 28 05:56 runpilot2-wrapper.sh
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc       5631 Apr 28 05:56 queuedata.json
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc     683926 Apr 28 05:56 pilot3.tar.gz
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc        100 Apr 28 18:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 21:05:08] -rwxr-xr-x 1 boinc boinc       7986 Apr 28 18:53 run_atlas
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc        105 Apr 28 18:53 job.xml
[2026-04-28 21:05:08] -rw-r--r-- 2 boinc boinc 2224448206 Apr 28 18:53 EVNT.49820373._000059.pool.root.1
[2026-04-28 21:05:08] drwxrwx--x 2 boinc boinc       4096 Apr 28 18:53 shared
[2026-04-28 21:05:08] -rw-r--r-- 2 boinc boinc     697408 Apr 28 18:53 input.tar.gz
[2026-04-28 21:05:08] -rw-r--r-- 2 boinc boinc      15667 Apr 28 18:53 start_atlas.sh
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc          0 Apr 28 18:53 boinc_setup_complete
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc       6294 Apr 28 18:53 init_data.xml
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc          0 Apr 28 18:53 boinc_lockfile
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc       2583 Apr 28 18:53 pandaJob.out
[2026-04-28 21:05:08] -rw------- 1 boinc boinc    1001781 Apr 28 18:53 agis_schedconf.cvmfs.json
[2026-04-28 21:05:08] -rw------- 1 boinc boinc    1512704 Apr 28 18:53 agis_ddmendpoints.agis.ALL.json
[2026-04-28 21:05:08] -rw------- 1 boinc boinc        424 Apr 28 18:53 workernode_map.json
[2026-04-28 21:05:08] drwx------ 5 boinc boinc       4096 Apr 28 18:53 pilot3
[2026-04-28 21:05:08] -rw------- 1 boinc boinc  271135539 Apr 28 21:03 HITS.49820375._018506.pool.root.1
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc        488 Apr 28 21:03 boinc_task_state.xml
[2026-04-28 21:05:08] -rw------- 1 boinc boinc       1022 Apr 28 21:04 memory_monitor_summary.json
[2026-04-28 21:05:08] -rw------- 1 boinc boinc     286940 Apr 28 21:04 log.49820375._018506.job.log.tgz.1
[2026-04-28 21:05:08] -rw------- 1 boinc boinc       6329 Apr 28 21:04 heartbeat_new.json
[2026-04-28 21:05:08] -rw------- 1 boinc boinc       6220 Apr 28 21:04 heartbeat.json
[2026-04-28 21:05:08] -rw------- 1 boinc boinc         95 Apr 28 21:04 pilot_heartbeat.json
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc       8192 Apr 28 21:05 boinc_mmap_file
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc         27 Apr 28 21:05 wrapper_checkpoint.txt
[2026-04-28 21:05:08] -rw------- 1 boinc boinc       5344 Apr 28 21:05 pilotlog.txt
[2026-04-28 21:05:08] -rw------- 1 boinc boinc     744155 Apr 28 21:05 log.49820375._018506.job.log.1
[2026-04-28 21:05:08] -rw------- 1 boinc boinc        357 Apr 28 21:05 output.list
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc        410 Apr 28 21:05 runtime_log
[2026-04-28 21:05:08] -rw------- 1 boinc boinc    1044480 Apr 28 21:05 result.tar.gz
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc       8534 Apr 28 21:05 runtime_log.err
[2026-04-28 21:05:08] -rw------- 1 boinc boinc        661 Apr 28 21:05 2ffa5f96c144.diag
[2026-04-28 21:05:08] -rw-r--r-- 1 boinc boinc      12436 Apr 28 21:05 stderr.txt
[2026-04-28 21:05:08] HITS file was successfully produced:
[2026-04-28 21:05:08] -rw------- 1 boinc boinc 271135539 Apr 28 21:03 shared/HITS.pool.root.1
[2026-04-28 21:05:08]  *** Contents of shared directory: ***
[2026-04-28 21:05:08] total 2438828
[2026-04-28 21:05:08] -rw-r--r-- 2 boinc boinc 2224448206 Apr 28 18:53 ATLAS.root_0
[2026-04-28 21:05:08] -rw-r--r-- 2 boinc boinc     697408 Apr 28 18:53 input.tar.gz
[2026-04-28 21:05:08] -rw-r--r-- 2 boinc boinc      15667 Apr 28 18:53 start_atlas.sh
[2026-04-28 21:05:08] -rw------- 1 boinc boinc  271135539 Apr 28 21:03 HITS.pool.root.1
[2026-04-28 21:05:08] -rw------- 1 boinc boinc    1044480 Apr 28 21:05 result.tar.gz
21:05:09 (357293): run_atlas exited; CPU time 28987.181782
21:05:09 (357293): called boinc_finish(0)

</stderr_txt>
]]>

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