Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:19:09 (20130): wrapper (7.7.26015): starting
16:19:09 (20130): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 16:19:09] Arguments: --nthreads 8
[2026-04-28 16:19:09] Threads: 8
[2026-04-28 16:19:09] Checking for CVMFS
[2026-04-28 16:19:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 16:19:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 16:19:13] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 16:19:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 16:19:15] 2.11.2.0 26317 18552 101804 158970 0 53 23886263 25165825 96 130560 0 6256827 99.898 2365387 4056 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 16:19:15] CVMFS is ok
[2026-04-28 16:19:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 16:19:15] Checking for apptainer binary...
[2026-04-28 16:19:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 16:19:15] Running /usr/bin/apptainer --version
[2026-04-28 16:19:15] apptainer version 1.3.2-1.el7
[2026-04-28 16:19:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 16:19:26] cg-vwn384.simple-grid.lan
[2026-04-28 16:19:26] apptainer works
[2026-04-28 16:19:26] Set ATHENA_PROC_NUMBER=8
[2026-04-28 16:19:26] Set ATHENA_CORE_NUMBER=8
[2026-04-28 16:19:26] Starting ATLAS job with PandaID=7116366005
[2026-04-28 16:19:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 23:24:50]  *** The last 200 lines of the pilot log: ***
[2026-04-28 23:24:50] 2026-04-28 21:23:53,227 | INFO     | this job has now completed (state=finished)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,227 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,227 | INFO     | log transfer has been attempted: DONE
[2026-04-28 23:24:50] 2026-04-28 21:23:53,227 | INFO     | job 7116366005 has finished - writing final server update
[2026-04-28 23:24:50] 2026-04-28 21:23:53,228 | INFO     | total number of processed events: 400 (read)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,230 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-7116366005/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,230 | INFO     | extracted standard info from prmon json
[2026-04-28 23:24:50] 2026-04-28 21:23:53,231 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 23:24:50] 2026-04-28 21:23:53,231 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 23:24:50] 2026-04-28 21:23:53,231 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 23:24:50] 2026-04-28 21:23:53,239 | INFO     | fitting pss+swap vs Time
[2026-04-28 23:24:50] 2026-04-28 21:23:53,240 | INFO     | sum of square deviations: 20598749010.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,245 | INFO     | sum of deviations: 192721958143.00003
[2026-04-28 23:24:50] 2026-04-28 21:23:53,245 | INFO     | mean x (centered): 0.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,246 | INFO     | mean y: 2518418.0864197533
[2026-04-28 23:24:50] 2026-04-28 21:23:53,246 | INFO     | intersect: 2518418.0864197533
[2026-04-28 23:24:50] 2026-04-28 21:23:53,246 | INFO     | chi2: 8.697036242185451
[2026-04-28 23:24:50] 2026-04-28 21:23:53,247 | INFO     | sum of square deviations: 19845209300.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,252 | INFO     | sum of deviations: 217680071756.4999
[2026-04-28 23:24:50] 2026-04-28 21:23:53,252 | INFO     | mean x (centered): 0.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,252 | INFO     | mean y: 2523413.7575
[2026-04-28 23:24:50] 2026-04-28 21:23:53,252 | INFO     | intersect: 2523413.7575
[2026-04-28 23:24:50] 2026-04-28 21:23:53,253 | INFO     | chi2: 7.97718880117813
[2026-04-28 23:24:50] 2026-04-28 21:23:53,253 | INFO     | current chi2=7.97718880117813 (change=8.276928150714856 %)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,253 | INFO     | right removable region: 399
[2026-04-28 23:24:50] 2026-04-28 21:23:53,254 | INFO     | sum of square deviations: 19845209300.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,259 | INFO     | sum of deviations: 41479478541.49997
[2026-04-28 23:24:50] 2026-04-28 21:23:53,259 | INFO     | mean x (centered): 0.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,259 | INFO     | mean y: 2549020.4125
[2026-04-28 23:24:50] 2026-04-28 21:23:53,260 | INFO     | intersect: 2549020.4125
[2026-04-28 23:24:50] 2026-04-28 21:23:53,260 | INFO     | chi2: 3.5246017356488846
[2026-04-28 23:24:50] 2026-04-28 21:23:53,260 | INFO     | current chi2=3.5246017356488846 (change=59.473530551101874 %)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,261 | INFO     | sum of square deviations: 19110274590.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,266 | INFO     | sum of deviations: -61774163749.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,266 | INFO     | mean x (centered): 0.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,266 | INFO     | mean y: 2570410.6025316454
[2026-04-28 23:24:50] 2026-04-28 21:23:53,266 | INFO     | intersect: 2570410.6025316454
[2026-04-28 23:24:50] 2026-04-28 21:23:53,267 | INFO     | chi2: 1.0854739544291792
[2026-04-28 23:24:50] 2026-04-28 21:23:53,267 | INFO     | current chi2=1.0854739544291792 (change=69.202933101622 %)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,268 | INFO     | sum of square deviations: 18393712317.5
[2026-04-28 23:24:50] 2026-04-28 21:23:53,273 | INFO     | sum of deviations: -77341598385.5
[2026-04-28 23:24:50] 2026-04-28 21:23:53,273 | INFO     | mean x (centered): 0.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,273 | INFO     | mean y: 2573711.5051282053
[2026-04-28 23:24:50] 2026-04-28 21:23:53,273 | INFO     | intersect: 2573711.5051282053
[2026-04-28 23:24:50] 2026-04-28 21:23:53,274 | INFO     | chi2: 1.003758713053145
[2026-04-28 23:24:50] 2026-04-28 21:23:53,274 | INFO     | current chi2=1.003758713053145 (change=7.528070207728388 %)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,274 | INFO     | left removable region: 15
[2026-04-28 23:24:50] 2026-04-28 21:23:53,275 | INFO     | sum of square deviations: 17557761760.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,280 | INFO     | sum of deviations: -49915259767.00002
[2026-04-28 23:24:50] 2026-04-28 21:23:53,280 | INFO     | mean x (centered): 0.0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,280 | INFO     | mean y: 2579640.7239583335
[2026-04-28 23:24:50] 2026-04-28 21:23:53,280 | INFO     | intersect: 2579640.7239583335
[2026-04-28 23:24:50] 2026-04-28 21:23:53,281 | INFO     | chi2: 0.22356661660294283
[2026-04-28 23:24:50] 2026-04-28 21:23:53,281 | INFO     | current memory leak: -2.84 B/s (using 384 data points, chi2=0.22)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,282 | INFO     | could have reported an average CPU frequency of 1999 MHz (17 samples)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,282 | INFO     | ..............................
[2026-04-28 23:24:50] 2026-04-28 21:23:53,282 | INFO     | . Timing measurements:
[2026-04-28 23:24:50] 2026-04-28 21:23:53,282 | INFO     | . get job = 0 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,282 | INFO     | . initial setup = 124 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,283 | INFO     | . payload setup = 186 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,283 | INFO     | . stage-in = 0 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,283 | INFO     | . payload execution = 24805 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,283 | INFO     | . stage-out = 4 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,283 | INFO     | . log creation = 1 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,283 | INFO     | ..............................
[2026-04-28 23:24:50] 2026-04-28 21:23:53,411 | INFO     | 
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | job summary report
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | --------------------------------------------------
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | PanDA job id: 7116366005
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | task id: 49820375
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | errors: (none)
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | pilot state: finished 
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | transexitcode: 0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,412 | INFO     | exeerrorcode: 0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | exeerrordiag: 
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | exitcode: 0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | exitmsg: OK
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | cpuconsumptiontime: 101088 s
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | nevents: 400
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | neventsw: 0
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | pid: 28596
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | pgrp: 28596
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | corecount: 8
[2026-04-28 23:24:50] 2026-04-28 21:23:53,413 | INFO     | event service: False
[2026-04-28 23:24:50] 2026-04-28 21:23:53,414 | INFO     | sizes: {0: 2280054, 1: 2281113, 2: 2282569, 12: 2282569, 24996: 2318020, 25001: 2327020, 25002: 2327204, 25005: 2327462}
[2026-04-28 23:24:50] 2026-04-28 21:23:53,414 | INFO     | --------------------------------------------------
[2026-04-28 23:24:50] 2026-04-28 21:23:53,414 | INFO     | 
[2026-04-28 23:24:50] 2026-04-28 21:23:53,414 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2026-04-28 23:24:50] 2026-04-28 21:23:54,062 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,065 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 23:24:50] 2026-04-28 21:23:54,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,065 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 23:24:50] 2026-04-28 21:23:54,065 | INFO     | job 7116366005 has completed (purged errors)
[2026-04-28 23:24:50] 2026-04-28 21:23:54,065 | INFO     | overall cleanup function is called
[2026-04-28 23:24:50] 2026-04-28 21:23:55,075 | INFO     | --- collectZombieJob: --- 10, [28596]
[2026-04-28 23:24:50] 2026-04-28 21:23:55,075 | INFO     | zombie collector waiting for pid 28596
[2026-04-28 23:24:50] 2026-04-28 21:23:55,075 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 23:24:50] 2026-04-28 21:23:55,076 | INFO     | collected zombie processes
[2026-04-28 23:24:50] 2026-04-28 21:23:55,076 | INFO     | will attempt to kill all subprocesses of pid=28596
[2026-04-28 23:24:50] 2026-04-28 21:23:55,141 | INFO     | process IDs to be killed: [28596] (in reverse order)
[2026-04-28 23:24:50] 2026-04-28 21:23:56,097 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 23:24:50] 2026-04-28 21:23:56,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 23:24:50] 2026-04-28 21:23:56,100 | INFO     | did not find any defunct processes belonging to 28596
[2026-04-28 23:24:50] 2026-04-28 21:23:56,102 | INFO     | did not find any defunct processes belonging to 28596
[2026-04-28 23:24:50] 2026-04-28 21:23:56,102 | INFO     | Ready for new job
[2026-04-28 23:24:50] 2026-04-28 21:23:56,104 | INFO     | ***************************************
[2026-04-28 23:24:50] 2026-04-28 21:23:56,105 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 23:24:50] 2026-04-28 21:23:56,105 | INFO     | ***************************************
[2026-04-28 23:24:50] 2026-04-28 21:23:56,105 | INFO     | 
[2026-04-28 23:24:50] 2026-04-28 21:23:56,105 | INFO     | pilot is running in a VM
[2026-04-28 23:24:50] 2026-04-28 21:23:56,106 | INFO     | architecture information:
[2026-04-28 23:24:50] 2026-04-28 21:23:56,106 | INFO     | executing command: cat /etc/os-release
[2026-04-28 23:24:50] 2026-04-28 21:23:56,429 | INFO     | cat /etc/os-release:
[2026-04-28 23:24:50] NAME="CentOS Linux"
[2026-04-28 23:24:50] VERSION="7 (Core)"
[2026-04-28 23:24:50] ID="centos"
[2026-04-28 23:24:50] ID_LIKE="rhel fedora"
[2026-04-28 23:24:50] VERSION_ID="7"
[2026-04-28 23:24:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 23:24:50] ANSI_COLOR="0;31"
[2026-04-28 23:24:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 23:24:50] HOME_URL="https://www.centos.org/"
[2026-04-28 23:24:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 23:24:50] 
[2026-04-28 23:24:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 23:24:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 23:24:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 23:24:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 23:24:50] 
[2026-04-28 23:24:50] 2026-04-28 21:23:56,430 | INFO     | ***************************************
[2026-04-28 23:24:50] 2026-04-28 21:23:56,933 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2026-04-28 23:24:50] 2026-04-28 21:23:57,234 | INFO     | sufficient remaining disk space (490882465792 B)
[2026-04-28 23:24:50] 2026-04-28 21:23:57,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 23:24:50] 2026-04-28 21:23:57,234 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 23:24:50] 2026-04-28 21:23:57,234 | INFO     | update_server=False
[2026-04-28 23:24:50] 2026-04-28 21:23:57,234 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 23:24:50] 2026-04-28 21:23:57,235 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 23:24:50] 2026-04-28 21:23:57,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 23:24:50] 2026-04-28 21:23:57,246 | INFO     | aborting loop
[2026-04-28 23:24:50] 2026-04-28 21:23:57,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 23:24:50] 2026-04-28 21:23:57,775 | INFO     | all payload control threads have been joined
[2026-04-28 23:24:50] 2026-04-28 21:23:57,987 | INFO     | all data control threads have been joined
[2026-04-28 23:24:50] 2026-04-28 21:23:58,240 | INFO     | [job] retrieve thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,246 | INFO     | [payload] validate_post thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,252 | INFO     | [job] job monitor thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,305 | INFO     | all job control threads have been joined
[2026-04-28 23:24:50] 2026-04-28 21:23:58,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 23:24:50] 2026-04-28 21:23:58,523 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,729 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,740 | INFO     | [payload] failed_post thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,781 | INFO     | [payload] control thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:58,993 | INFO     | [data] control thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,180 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,311 | INFO     | [job] control thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,433 | INFO     | [job] queue monitor thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,483 | INFO     | [job] validate thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,603 | INFO     | [data] copytool_in thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,656 | INFO     | [data] copytool_out thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:23:59,657 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:24:01,244 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 23:24:50] 2026-04-28 21:24:26,267 | INFO     | PID=24110 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-28 23:24:50] 2026-04-28 21:24:26,267 | INFO     | .. there are 2 such processes running
[2026-04-28 23:24:50] 2026-04-28 21:24:26,268 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 23:24:50] 2026-04-28 21:24:26,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 23:24:50] 2026-04-28 21:24:26,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 23:24:50] 2026-04-28 21:24:39,184 | INFO     | [monitor] cgroup control has ended
[2026-04-28 23:24:50] 2026-04-28 21:24:40,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059049670464)>', '<ExcThread(monitor, started 140058531190528)>']
[2026-04-28 23:24:50] 2026-04-28 21:24:40,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 23:24:50] 2026-04-28 21:24:40,352 | INFO     | [monitor] control thread has ended
[2026-04-28 23:24:50] 2026-04-28 21:24:45,039 | INFO     | all workflow threads have been joined
[2026-04-28 23:24:50] 2026-04-28 21:24:45,039 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 23:24:50] 2026-04-28 21:24:45,040 | INFO     | traces error code: 0
[2026-04-28 23:24:50] 2026-04-28 21:24:45,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 23:24:50] 2026-04-28 21:24:45,377 [wrapper] ==== pilot stdout END ====
[2026-04-28 23:24:50] 2026-04-28 21:24:45,483 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 23:24:50] 2026-04-28 21:24:45,610 [wrapper] pilotpid: 24110
[2026-04-28 23:24:50] 2026-04-28 21:24:45,757 [wrapper] Pilot exit status: 0
[2026-04-28 23:24:50] 2026-04-28 21:24:46,268 [wrapper] pandaids: 7116366005
[2026-04-28 23:24:50] 2026-04-28 21:24:47,263 [wrapper] cleanup supervisor_pilot 15897 24111
[2026-04-28 23:24:50] 2026-04-28 21:24:47,394 [wrapper] Test setup, not cleaning
[2026-04-28 23:24:50] 2026-04-28 21:24:47,511 [wrapper] apfmon messages muted
[2026-04-28 23:24:50] 2026-04-28 21:24:47,667 [wrapper] ==== wrapper stdout END ====
[2026-04-28 23:24:50] 2026-04-28 21:24:47,788 [wrapper] ==== wrapper stderr END ====
[2026-04-28 23:24:50]  *** Error codes and diagnostics ***
[2026-04-28 23:24:50]     "exeErrorCode": 0,
[2026-04-28 23:24:50]     "pilotErrorCode": 0,
[2026-04-28 23:24:50]  *** Listing of results directory ***
[2026-04-28 23:24:50] total 2448056
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc     683926 Apr 28 05:00 pilot3.tar.gz
[2026-04-28 23:24:50] -rwx------. 1 boinc boinc      36322 Apr 28 05:39 runpilot2-wrapper.sh
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc       5631 Apr 28 05:39 queuedata.json
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc        100 Apr 28 16:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 23:24:50] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 16:19 run_atlas
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc        105 Apr 28 16:19 job.xml
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc       6308 Apr 28 16:19 init_data.xml
[2026-04-28 23:24:50] -rw-r--r--. 2 boinc boinc 2224448206 Apr 28 16:19 EVNT.49820373._000059.pool.root.1
[2026-04-28 23:24:50] -rw-r--r--. 2 boinc boinc      15667 Apr 28 16:19 start_atlas.sh
[2026-04-28 23:24:50] drwxrwx--x. 2 boinc boinc         68 Apr 28 16:19 shared
[2026-04-28 23:24:50] -rw-r--r--. 2 boinc boinc     697419 Apr 28 16:19 input.tar.gz
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc          0 Apr 28 16:19 boinc_lockfile
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc       2584 Apr 28 16:19 pandaJob.out
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc        415 Apr 28 16:26 workernode_map.json
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc     993626 Apr 28 16:26 agis_schedconf.cvmfs.json
[2026-04-28 23:24:50] drwx------. 5 boinc boinc       4096 Apr 28 16:26 pilot3
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc  272419939 Apr 28 23:22 HITS.49820375._018608.pool.root.1
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc        491 Apr 28 23:22 boinc_task_state.xml
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc         95 Apr 28 23:23 pilot_heartbeat.json
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc       1022 Apr 28 23:23 memory_monitor_summary.json
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc    1512704 Apr 28 23:23 agis_ddmendpoints.agis.ALL.json
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc     617875 Apr 28 23:23 log.49820375._018608.job.log.tgz.1
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc       6353 Apr 28 23:23 heartbeat_new.json
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc       6244 Apr 28 23:23 heartbeat.json
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc       8192 Apr 28 23:24 boinc_mmap_file
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc         29 Apr 28 23:24 wrapper_checkpoint.txt
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc       4884 Apr 28 23:24 pilotlog.txt
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc    2292218 Apr 28 23:24 log.49820375._018608.job.log.1
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc        357 Apr 28 23:24 output.list
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc        410 Apr 28 23:24 runtime_log
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc    2928640 Apr 28 23:24 result.tar.gz
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc       8455 Apr 28 23:24 runtime_log.err
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc        657 Apr 28 23:24 2be71d60f580.diag
[2026-04-28 23:24:50] -rw-r--r--. 1 boinc boinc      20627 Apr 28 23:24 stderr.txt
[2026-04-28 23:24:50] HITS file was successfully produced:
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc 272419939 Apr 28 23:22 shared/HITS.pool.root.1
[2026-04-28 23:24:50]  *** Contents of shared directory: ***
[2026-04-28 23:24:50] total 2441912
[2026-04-28 23:24:50] -rw-r--r--. 2 boinc boinc 2224448206 Apr 28 16:19 ATLAS.root_0
[2026-04-28 23:24:50] -rw-r--r--. 2 boinc boinc      15667 Apr 28 16:19 start_atlas.sh
[2026-04-28 23:24:50] -rw-r--r--. 2 boinc boinc     697419 Apr 28 16:19 input.tar.gz
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc  272419939 Apr 28 23:22 HITS.pool.root.1
[2026-04-28 23:24:50] -rw-------. 1 boinc boinc    2928640 Apr 28 23:24 result.tar.gz
23:24:51 (20130): run_atlas exited; CPU time 101345.003342
23:24:51 (20130): called boinc_finish(0)

</stderr_txt>
]]>

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