Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:14 (3009735): wrapper (7.7.26015): starting
00:11:14 (3009735): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 00:11:14] Arguments: --nthreads 8
[2026-04-28 00:11:14] Threads: 8
[2026-04-28 00:11:14] Checking for CVMFS
[2026-04-28 00:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 00:11:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 00:11:16] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 00:11:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 00:11:18] 2.13.3.0 9473 249827 143436 158953 3 192 27682229 32935937 25243 16776704 0 1046352783 99.748 813246735 32774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-28 00:11:18] CVMFS is ok
[2026-04-28 00:11:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 00:11:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 00:11:18] Further information can be found at the LHC@home message board.
[2026-04-28 00:11:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 00:11:18] Checking for apptainer binary...
[2026-04-28 00:11:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 00:11:18] Running /usr/bin/apptainer --version
[2026-04-28 00:11:18] apptainer version 1.4.5-3.el9
[2026-04-28 00:11:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 00:11:19] c-4-11.aglt2.org
[2026-04-28 00:11:19] apptainer works
[2026-04-28 00:11:19] Set ATHENA_PROC_NUMBER=8
[2026-04-28 00:11:19] Set ATHENA_CORE_NUMBER=8
[2026-04-28 00:11:20] Starting ATLAS job with PandaID=7116364884
[2026-04-28 00:11:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-29 00:04:35]  *** The last 200 lines of the pilot log: ***
[2026-04-29 00:04:35] 2026-04-29 01:12:43,923 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-7116364884/log.49820375._018475.job.log.tgz.1 /tmp/boinchome/slots/3/log.49820375._018475.job
[2026-04-29 00:04:35] 2026-04-29 01:12:43,991 | INFO     | adding to output.list: log.49820375._018475.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/b2/log.49820375._018475.job.log.tg
[2026-04-29 00:04:35] 2026-04-29 01:12:43,992 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-29 00:04:35] 2026-04-29 01:12:43,992 | INFO     | summary of transferred files:
[2026-04-29 00:04:35] 2026-04-29 01:12:43,992 | INFO     |  -- lfn=log.49820375._018475.job.log.tgz.1, status_code=0, status=transferred
[2026-04-29 00:04:35] 2026-04-29 01:12:43,992 | INFO     | stage-out finished correctly
[2026-04-29 00:04:35] 2026-04-29 01:12:45,764 | INFO     | monitor loop #3501: job 0:7116364884 is in state 'finished'
[2026-04-29 00:04:35] 2026-04-29 01:12:45,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 00:04:35] 2026-04-29 01:12:47,265 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-29 00:04:35] 2026-04-29 01:12:48,210 | INFO     | job 7116364884 has state=finished
[2026-04-29 00:04:35] 2026-04-29 01:12:48,210 | INFO     | preparing for final server update for job 7116364884 in state='finished'
[2026-04-29 00:04:35] 2026-04-29 01:12:48,210 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-7116364884/jobReport.json
[2026-04-29 00:04:35] 2026-04-29 01:12:48,213 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-04-29 00:04:35] 2026-04-29 01:12:48,213 | INFO     | this job has now completed (state=finished)
[2026-04-29 00:04:35] 2026-04-29 01:12:48,277 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-29 00:04:35] 2026-04-29 01:12:48,277 | INFO     | log transfer has been attempted: DONE
[2026-04-29 00:04:35] 2026-04-29 01:12:48,277 | INFO     | job 7116364884 has finished - writing final server update
[2026-04-29 00:04:35] 2026-04-29 01:12:48,278 | INFO     | total number of processed events: 400 (read)
[2026-04-29 00:04:35] 2026-04-29 01:12:48,376 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7116364884/memory_monitor_summary.json (trf name=prmon)
[2026-04-29 00:04:35] 2026-04-29 01:12:48,377 | INFO     | extracted standard info from prmon json
[2026-04-29 00:04:35] 2026-04-29 01:12:48,377 | INFO     | extracted standard memory fields from prmon json
[2026-04-29 00:04:35] 2026-04-29 01:12:48,395 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-29 00:04:35] 2026-04-29 01:12:48,395 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-29 00:04:35] 2026-04-29 01:12:48,424 | INFO     | monitor loop #3502: job 0:7116364884 is in state 'finished'
[2026-04-29 00:04:35] 2026-04-29 01:12:48,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-29 00:04:35] 2026-04-29 01:12:48,574 | INFO     | fitting pss+swap vs Time
[2026-04-29 00:04:35] 2026-04-29 01:12:48,604 | INFO     | sum of square deviations: 584062681973.485
[2026-04-29 00:04:35] 2026-04-29 01:12:49,149 | INFO     | sum of deviations: 1374898979397.6438
[2026-04-29 00:04:35] 2026-04-29 01:12:49,149 | INFO     | mean x (centered): 0.0
[2026-04-29 00:04:35] 2026-04-29 01:12:49,150 | INFO     | mean y: 2493637.64048583
[2026-04-29 00:04:35] 2026-04-29 01:12:49,150 | INFO     | intersect: 2493637.64048583
[2026-04-29 00:04:35] 2026-04-29 01:12:49,194 | INFO     | chi2: 18.638225995951533
[2026-04-29 00:04:35] 2026-04-29 01:12:49,196 | INFO     | sum of square deviations: 576998842863.3634
[2026-04-29 00:04:35] 2026-04-29 01:12:49,621 | INFO     | sum of deviations: 1761800465099.3425
[2026-04-29 00:04:35] 2026-04-29 01:12:49,621 | INFO     | mean x (centered): 0.0
[2026-04-29 00:04:35] 2026-04-29 01:12:49,622 | INFO     | mean y: 2501989.4479674795
[2026-04-29 00:04:35] 2026-04-29 01:12:49,622 | INFO     | intersect: 2501989.4479674795
[2026-04-29 00:04:35] 2026-04-29 01:12:49,677 | INFO     | chi2: 15.099576465714499
[2026-04-29 00:04:35] 2026-04-29 01:12:49,677 | INFO     | current chi2=15.099576465714499 (change=18.985978231005866 %)
[2026-04-29 00:04:35] 2026-04-29 01:12:49,677 | INFO     | right removable region: 1229
[2026-04-29 00:04:35] 2026-04-29 01:12:49,679 | INFO     | sum of square deviations: 576995408372.0063
[2026-04-29 00:04:35] 2026-04-29 01:12:50,236 | INFO     | sum of deviations: 932470230894.7794
[2026-04-29 00:04:35] 2026-04-29 01:12:50,248 | INFO     | mean x (centered): 0.0
[2026-04-29 00:04:35] 2026-04-29 01:12:50,248 | INFO     | mean y: 2503184.2658536583
[2026-04-29 00:04:35] 2026-04-29 01:12:50,248 | INFO     | intersect: 2503184.2658536583
[2026-04-29 00:04:35] 2026-04-29 01:12:50,250 | INFO     | chi2: 14.115819322907749
[2026-04-29 00:04:35] 2026-04-29 01:12:50,251 | INFO     | current chi2=14.115819322907749 (change=24.264147639513066 %)
[2026-04-29 00:04:35] 2026-04-29 01:12:50,251 | INFO     | left removable region: 5
[2026-04-29 00:04:35] 2026-04-29 01:12:50,253 | INFO     | sum of square deviations: 568594314001.9595
[2026-04-29 00:04:35] 2026-04-29 01:12:50,531 | INFO     | sum of deviations: 1397049056150.401
[2026-04-29 00:04:35] 2026-04-29 01:12:50,532 | INFO     | mean x (centered): 0.0
[2026-04-29 00:04:35] 2026-04-29 01:12:50,532 | INFO     | mean y: 2513302.9942810456
[2026-04-29 00:04:35] 2026-04-29 01:12:50,532 | INFO     | intersect: 2513302.9942810456
[2026-04-29 00:04:35] 2026-04-29 01:12:50,544 | INFO     | chi2: 9.829467253049351
[2026-04-29 00:04:35] 2026-04-29 01:12:50,544 | INFO     | current memory leak: 2.46 B/s (using 1224 data points, chi2=9.83)
[2026-04-29 00:04:35] 2026-04-29 01:12:50,545 | INFO     | could have reported an average CPU frequency of 2599 MHz (45 samples)
[2026-04-29 00:04:35] 2026-04-29 01:12:50,546 | INFO     | ..............................
[2026-04-29 00:04:35] 2026-04-29 01:12:50,546 | INFO     | . Timing measurements:
[2026-04-29 00:04:35] 2026-04-29 01:12:50,546 | INFO     | . get job = 0 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,546 | INFO     | . initial setup = 58 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,546 | INFO     | . payload setup = 144 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,546 | INFO     | . stage-in = 0 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,555 | INFO     | . payload execution = 75334 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,555 | INFO     | . stage-out = 13 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,555 | INFO     | . log creation = 3 s
[2026-04-29 00:04:35] 2026-04-29 01:12:50,555 | INFO     | ..............................
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | 
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | job summary report
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | --------------------------------------------------
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | PanDA job id: 7116364884
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | task id: 49820375
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | errors: (none)
[2026-04-29 00:04:35] 2026-04-29 01:12:51,518 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | pilot state: finished 
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | transexitcode: 0
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | exeerrorcode: 0
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | exeerrordiag: 
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | exitcode: 0
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | exitmsg: OK
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | cpuconsumptiontime: 90583 s
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | nevents: 400
[2026-04-29 00:04:35] 2026-04-29 01:12:51,519 | INFO     | neventsw: 0
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | pid: 3037261
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | pgrp: 3037261
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | corecount: 8
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | event service: False
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | sizes: {0: 2280054, 1: 2280655, 2: 2282568, 3: 2282568, 4: 2282596, 5: 2282624, 75484: 2338965, 75485: 2338964, 75498: 2348018, 75502: 2348074, 75505: 2348268}
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | --------------------------------------------------
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | 
[2026-04-29 00:04:35] 2026-04-29 01:12:51,520 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-04-29 00:04:35] 2026-04-29 01:12:52,032 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,032 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,035 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-29 00:04:35] 2026-04-29 01:12:52,058 | INFO     | job 7116364884 has completed (purged errors)
[2026-04-29 00:04:35] 2026-04-29 01:12:52,058 | INFO     | overall cleanup function is called
[2026-04-29 00:04:35] 2026-04-29 01:12:53,075 | INFO     | --- collectZombieJob: --- 10, [3037261]
[2026-04-29 00:04:35] 2026-04-29 01:12:53,075 | INFO     | zombie collector waiting for pid 3037261
[2026-04-29 00:04:35] 2026-04-29 01:12:53,076 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-29 00:04:35] 2026-04-29 01:12:53,076 | INFO     | collected zombie processes
[2026-04-29 00:04:35] 2026-04-29 01:12:53,076 | INFO     | will attempt to kill all subprocesses of pid=3037261
[2026-04-29 00:04:35] 2026-04-29 01:12:56,183 | INFO     | process IDs to be killed: [3037261] (in reverse order)
[2026-04-29 00:04:35] 2026-04-29 01:12:56,516 | WARNING  | found no corresponding commands to process id(s)
[2026-04-29 00:04:35] 2026-04-29 01:12:56,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-29 00:04:35] 2026-04-29 01:12:56,724 | INFO     | did not find any defunct processes belonging to 3037261
[2026-04-29 00:04:35] 2026-04-29 01:12:56,883 | INFO     | did not find any defunct processes belonging to 3037261
[2026-04-29 00:04:35] 2026-04-29 01:12:56,884 | INFO     | Ready for new job
[2026-04-29 00:04:35] 2026-04-29 01:12:56,908 | INFO     | ***************************************
[2026-04-29 00:04:35] 2026-04-29 01:12:56,938 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-29 00:04:35] 2026-04-29 01:12:56,938 | INFO     | ***************************************
[2026-04-29 00:04:35] 2026-04-29 01:12:56,938 | INFO     | 
[2026-04-29 00:04:35] 2026-04-29 01:12:56,940 | INFO     | architecture information:
[2026-04-29 00:04:35] 2026-04-29 01:12:56,959 | INFO     | executing command: cat /etc/os-release
[2026-04-29 00:04:35] 2026-04-29 01:12:57,114 | INFO     | cat /etc/os-release:
[2026-04-29 00:04:35] NAME="CentOS Linux"
[2026-04-29 00:04:35] VERSION="7 (Core)"
[2026-04-29 00:04:35] ID="centos"
[2026-04-29 00:04:35] ID_LIKE="rhel fedora"
[2026-04-29 00:04:35] VERSION_ID="7"
[2026-04-29 00:04:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-29 00:04:35] ANSI_COLOR="0;31"
[2026-04-29 00:04:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-29 00:04:35] HOME_URL="https://www.centos.org/"
[2026-04-29 00:04:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-29 00:04:35] 
[2026-04-29 00:04:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-29 00:04:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-29 00:04:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-29 00:04:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-29 00:04:35] 
[2026-04-29 00:04:35] 2026-04-29 01:12:57,114 | INFO     | ***************************************
[2026-04-29 00:04:35] 2026-04-29 01:12:57,618 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-04-29 00:04:35] 2026-04-29 01:12:57,741 | INFO     | sufficient remaining disk space (57898172416 B)
[2026-04-29 00:04:35] 2026-04-29 01:12:57,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-29 00:04:35] 2026-04-29 01:12:57,742 | INFO     | current server update state: UPDATING_FINAL
[2026-04-29 00:04:35] 2026-04-29 01:12:57,765 | INFO     | update_server=False
[2026-04-29 00:04:35] 2026-04-29 01:12:57,765 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-29 00:04:35] 2026-04-29 01:12:57,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-29 00:04:35] 2026-04-29 01:12:57,773 | INFO     | aborting loop
[2026-04-29 00:04:35] 2026-04-29 01:12:57,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-29 00:04:35] 2026-04-29 01:12:58,049 | INFO     | all payload control threads have been joined
[2026-04-29 00:04:35] 2026-04-29 01:12:58,575 | INFO     | all data control threads have been joined
[2026-04-29 00:04:35] 2026-04-29 01:12:58,771 | INFO     | [job] retrieve thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:58,790 | INFO     | [job] job monitor thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:58,906 | INFO     | all job control threads have been joined
[2026-04-29 00:04:35] 2026-04-29 01:12:59,005 | INFO     | [payload] execute_payloads thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,008 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-29 00:04:35] 2026-04-29 01:12:59,038 | INFO     | [job] validate thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,038 | INFO     | [job] create_data_payload thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,054 | INFO     | [payload] control thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,385 | INFO     | [payload] validate_post thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,581 | INFO     | [data] control thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,774 | INFO     | [payload] validate_pre thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,801 | INFO     | [data] copytool_out thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,912 | INFO     | [job] control thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:12:59,943 | INFO     | [data] copytool_in thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:13:00,071 | INFO     | [payload] failed_post thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:13:00,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-29 00:04:35] 2026-04-29 01:13:01,532 | INFO     | [job] queue monitor thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:13:03,060 | INFO     | [data] queue_monitor thread has finished
[2026-04-29 00:04:35] 2026-04-29 01:13:14,231 | INFO     | [monitor] cgroup control has ended
[2026-04-29 00:04:35] 2026-04-29 01:13:14,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751723095872)>', '<ExcThread(monitor, started 139750786725632)>']
[2026-04-29 00:04:35] 2026-04-29 01:13:19,470 | INFO     | all workflow threads have been joined
[2026-04-29 00:04:35] 2026-04-29 01:13:19,475 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-29 00:04:35] 2026-04-29 01:13:19,475 | INFO     | traces error code: 0
[2026-04-29 00:04:35] 2026-04-29 01:13:19,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-29 00:04:35] 2026-04-29 01:13:25,925 | INFO     | PID=3021254 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-29 00:04:35] 2026-04-29 01:13:25,925 | INFO     | .. there are 45 such processes running
[2026-04-29 00:04:35] 2026-04-29 01:13:25,925 | INFO     | found 0 job(s) in 20 queues
[2026-04-29 00:04:35] 2026-04-29 01:13:25,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-29 00:04:35] 2026-04-29 01:13:25,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-29 00:04:35] 2026-04-29 01:13:25,926 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-29 00:04:35] 2026-04-29 01:13:25,926 | INFO     | [monitor] control thread has ended
[2026-04-29 00:04:35] 2026-04-29 01:13:26,212 [wrapper] ==== pilot stdout END ====
[2026-04-29 00:04:35] 2026-04-29 01:13:26,235 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-29 00:04:35] 2026-04-29 01:13:26,262 [wrapper] pilotpid: 3021254
[2026-04-29 00:04:35] 2026-04-29 01:13:26,293 [wrapper] Pilot exit status: 0
[2026-04-29 00:04:35] 2026-04-29 01:13:26,460 [wrapper] pandaids: 7116364884
[2026-04-29 00:04:35] 2026-04-29 01:13:27,140 [wrapper] cleanup supervisor_pilot  123043 3021255
[2026-04-29 00:04:35] 2026-04-29 01:13:27,162 [wrapper] Test setup, not cleaning
[2026-04-29 00:04:35] 2026-04-29 01:13:27,191 [wrapper] apfmon messages muted
[2026-04-29 00:04:35] 2026-04-29 01:13:27,228 [wrapper] ==== wrapper stdout END ====
[2026-04-29 00:04:35] 2026-04-29 01:13:27,287 [wrapper] ==== wrapper stderr END ====
[2026-04-29 00:04:35]  *** Error codes and diagnostics ***
[2026-04-29 00:04:35]     "exeErrorCode": 0,
[2026-04-29 00:04:35]     "pilotErrorCode": 0,
[2026-04-29 00:04:35]  *** Listing of results directory ***
[2026-04-29 00:04:35] total 2474644
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas     683926 Apr 27 23:00 pilot3.tar.gz
[2026-04-29 00:04:35] -rwx------. 1 boincer umatlas      36322 Apr 27 23:39 runpilot2-wrapper.sh
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas       5631 Apr 27 23:39 queuedata.json
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas        100 Apr 28 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-29 00:04:35] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 28 00:11 run_atlas
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas        105 Apr 28 00:11 job.xml
[2026-04-29 00:04:35] -rw-r--r--. 2 boincer umatlas 2250376447 Apr 28 00:11 EVNT.49820373._000058.pool.root.1
[2026-04-29 00:04:35] -rw-r--r--. 2 boincer umatlas      15667 Apr 28 00:11 start_atlas.sh
[2026-04-29 00:04:35] drwxrwx--x. 2 boincer umatlas       4096 Apr 28 00:11 shared
[2026-04-29 00:04:35] -rw-r--r--. 2 boincer umatlas     697415 Apr 28 00:11 input.tar.gz
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas          0 Apr 28 00:11 boinc_lockfile
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas       2584 Apr 28 00:11 pandaJob.out
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas         57 Apr 28 00:11 setup.sh.local
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas     996684 Apr 28 00:13 agis_schedconf.cvmfs.json
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas        440 Apr 28 00:14 workernode_map.json
[2026-04-29 00:04:35] drwx------. 5 boincer umatlas       4096 Apr 28 00:14 pilot3
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas  267573029 Apr 28 21:00 HITS.49820375._018475.pool.root.1
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas        488 Apr 28 21:00 boinc_task_state.xml
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas       1056 Apr 28 21:12 memory_monitor_summary.json
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas         95 Apr 28 21:12 pilot_heartbeat.json
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas    1512704 Apr 28 21:12 agis_ddmendpoints.agis.ALL.json
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas     999273 Apr 28 21:12 log.49820375._018475.job.log.tgz.1
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas       6439 Apr 28 21:12 heartbeat_new.json
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas       6330 Apr 28 21:12 heartbeat.json
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas        823 Apr 28 21:13 pilotlog.txt
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas    4972782 Apr 28 21:13 log.49820375._018475.job.log.1
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas        357 Apr 28 21:13 output.list
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas        410 Apr 28 21:13 runtime_log
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas    5990400 Apr 28 21:13 result.tar.gz
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas       8955 Apr 28 21:13 runtime_log.err
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas        660 Apr 28 21:13 2bde3de1a4d3.diag
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas       6576 Apr 29 00:04 init_data.xml
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas       8192 Apr 29 00:04 boinc_mmap_file
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas         26 Apr 29 00:04 wrapper_checkpoint.txt
[2026-04-29 00:04:35] -rw-r--r--. 1 boincer umatlas      21681 Apr 29 00:04 stderr.txt
[2026-04-29 00:04:35] HITS file was successfully produced:
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas 267573029 Apr 28 21:00 shared/HITS.pool.root.1
[2026-04-29 00:04:35]  *** Contents of shared directory: ***
[2026-04-29 00:04:35] total 2465500
[2026-04-29 00:04:35] -rw-r--r--. 2 boincer umatlas 2250376447 Apr 28 00:11 ATLAS.root_0
[2026-04-29 00:04:35] -rw-r--r--. 2 boincer umatlas      15667 Apr 28 00:11 start_atlas.sh
[2026-04-29 00:04:35] -rw-r--r--. 2 boincer umatlas     697415 Apr 28 00:11 input.tar.gz
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas  267573029 Apr 28 21:00 HITS.pool.root.1
[2026-04-29 00:04:35] -rw-------. 1 boincer umatlas    5990400 Apr 28 21:13 result.tar.gz
00:04:37 (3009735): run_atlas exited; CPU time 93485.332253
00:04:37 (3009735): called boinc_finish(0)

</stderr_txt>
]]>

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