Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:36:47 (296923): wrapper (7.7.26015): starting
12:36:47 (296923): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 12:36:47] Arguments: --nthreads 4
[2026-04-28 12:36:47] Threads: 4
[2026-04-28 12:36:47] Checking for CVMFS
[2026-04-28 12:36:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 12:36:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 12:36:48] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 12:36:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 12:36:48] 2.9.2.0 4129081 2604 91312 158963 0 50 20936798 36864001 0 130560 0 1328388 99.984 100969 11019 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-28 12:36:48] CVMFS is ok
[2026-04-28 12:36:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 12:36:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 12:36:48] Further information can be found at the LHC@home message board.
[2026-04-28 12:36:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 12:36:48] Checking for apptainer binary...
[2026-04-28 12:36:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 12:36:48] Running /usr/bin/apptainer --version
[2026-04-28 12:36:48] apptainer version 1.4.1-1.1
[2026-04-28 12:36:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 12:36:48] magicA250
[2026-04-28 12:36:48] apptainer works
[2026-04-28 12:36:48] Set ATHENA_PROC_NUMBER=4
[2026-04-28 12:36:48] Set ATHENA_CORE_NUMBER=4
[2026-04-28 12:36:49] Starting ATLAS job with PandaID=7116245464
[2026-04-28 12:36:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 13:52:14]  *** The last 200 lines of the pilot log: ***
[2026-04-28 13:52:14] 2026-04-28 11:51:18,989 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 13:52:14] 2026-04-28 11:51:18,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 13:52:14] 2026-04-28 11:51:18,989 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 13:52:14] 2026-04-28 11:51:18,989 | INFO     | job 7116245464 has completed (purged errors)
[2026-04-28 13:52:14] 2026-04-28 11:51:18,989 | INFO     | overall cleanup function is called
[2026-04-28 13:52:14] 2026-04-28 11:51:19,996 | INFO     | --- collectZombieJob: --- 10, [305558]
[2026-04-28 13:52:14] 2026-04-28 11:51:19,996 | INFO     | zombie collector waiting for pid 305558
[2026-04-28 13:52:14] 2026-04-28 11:51:19,996 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 13:52:14] 2026-04-28 11:51:19,996 | INFO     | collected zombie processes
[2026-04-28 13:52:14] 2026-04-28 11:51:19,997 | INFO     | will attempt to kill all subprocesses of pid=305558
[2026-04-28 13:52:14] 2026-04-28 11:51:20,030 | INFO     | process IDs to be killed: [305558] (in reverse order)
[2026-04-28 13:52:14] 2026-04-28 11:51:20,065 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 13:52:14] 2026-04-28 11:51:20,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 13:52:14] 2026-04-28 11:51:20,067 | INFO     | did not find any defunct processes belonging to 305558
[2026-04-28 13:52:14] 2026-04-28 11:51:20,068 | INFO     | did not find any defunct processes belonging to 305558
[2026-04-28 13:52:14] 2026-04-28 11:51:20,068 | INFO     | Ready for new job
[2026-04-28 13:52:14] 2026-04-28 11:51:20,069 | INFO     | ***************************************
[2026-04-28 13:52:14] 2026-04-28 11:51:20,069 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 13:52:14] 2026-04-28 11:51:20,069 | INFO     | ***************************************
[2026-04-28 13:52:14] 2026-04-28 11:51:20,069 | INFO     | 
[2026-04-28 13:52:14] 2026-04-28 11:51:20,069 | INFO     | architecture information:
[2026-04-28 13:52:14] 2026-04-28 11:51:20,069 | INFO     | executing command: cat /etc/os-release
[2026-04-28 13:52:14] 2026-04-28 11:51:20,085 | INFO     | cat /etc/os-release:
[2026-04-28 13:52:14] NAME="CentOS Linux"
[2026-04-28 13:52:14] VERSION="7 (Core)"
[2026-04-28 13:52:14] ID="centos"
[2026-04-28 13:52:14] ID_LIKE="rhel fedora"
[2026-04-28 13:52:14] VERSION_ID="7"
[2026-04-28 13:52:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 13:52:14] ANSI_COLOR="0;31"
[2026-04-28 13:52:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 13:52:14] HOME_URL="https://www.centos.org/"
[2026-04-28 13:52:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 13:52:14] 
[2026-04-28 13:52:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 13:52:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 13:52:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 13:52:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 13:52:14] 
[2026-04-28 13:52:14] 2026-04-28 11:51:20,085 | INFO     | ***************************************
[2026-04-28 13:52:14] 2026-04-28 11:51:20,588 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-28 13:52:14] 2026-04-28 11:51:20,605 | INFO     | sufficient remaining disk space (329912418304 B)
[2026-04-28 13:52:14] 2026-04-28 11:51:20,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 13:52:14] 2026-04-28 11:51:20,605 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 13:52:14] 2026-04-28 11:51:20,605 | INFO     | update_server=False
[2026-04-28 13:52:14] 2026-04-28 11:51:20,605 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 13:52:14] 2026-04-28 11:51:20,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 13:52:14] 2026-04-28 11:51:20,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 13:52:14] 2026-04-28 11:51:20,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 13:52:14] 2026-04-28 11:51:20,840 | INFO     | all job control threads have been joined
[2026-04-28 13:52:14] 2026-04-28 11:51:21,130 | INFO     | all payload control threads have been joined
[2026-04-28 13:52:14] 2026-04-28 11:51:21,363 | INFO     | all data control threads have been joined
[2026-04-28 13:52:14] 2026-04-28 11:51:21,611 | INFO     | [job] retrieve thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:21,612 | INFO     | [job] queue monitor thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:21,844 | INFO     | [payload] failed_post thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:21,846 | INFO     | [job] control thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:21,875 | INFO     | [payload] validate_post thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,135 | INFO     | [payload] control thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,368 | INFO     | [data] control thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,612 | INFO     | [data] copytool_out thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,663 | INFO     | [job] validate thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,729 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,795 | WARNING  | process 305558 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 13:52:14] 2026-04-28 11:51:22,826 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 13:52:14] 2026-04-28 11:51:22,856 | INFO     | number of running child processes to parent process 305558: 1
[2026-04-28 13:52:14] 2026-04-28 11:51:22,857 | INFO     | maximum number of monitored processes: 6
[2026-04-28 13:52:14] 2026-04-28 11:51:22,857 | INFO     | aborting job monitoring since job object (job id=7116245464) has expired
[2026-04-28 13:52:14] 2026-04-28 11:51:22,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 13:52:14] 2026-04-28 11:51:22,857 | INFO     | will abort loop
[2026-04-28 13:52:14] 2026-04-28 11:51:22,858 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:22,951 | INFO     | [data] copytool_in thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:23,040 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:23,862 | INFO     | [job] job monitor thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:24,612 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:30,921 | INFO     | job.realtimelogging is not enabled
[2026-04-28 13:52:14] 2026-04-28 11:51:31,927 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 13:52:14] 2026-04-28 11:51:51,338 | INFO     | PID=301044 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-28 13:52:14] 2026-04-28 11:51:51,339 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 13:52:14] 2026-04-28 11:51:51,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 13:52:14] 2026-04-28 11:51:51,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 13:52:14] 2026-04-28 11:51:57,832 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-04-28 13:52:14] 2026-04-28 11:52:07,448 | INFO     | [monitor] cgroup control has ended
[2026-04-28 13:52:14] 2026-04-28 11:52:09,205 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045296777024)>', '<ExcThread(monitor, started 140044362827520)>']
[2026-04-28 13:52:14] 2026-04-28 11:52:09,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 13:52:14] 2026-04-28 11:52:09,433 | INFO     | [monitor] control thread has ended
[2026-04-28 13:52:14] 2026-04-28 11:52:14,231 | INFO     | all workflow threads have been joined
[2026-04-28 13:52:14] 2026-04-28 11:52:14,231 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 13:52:14] 2026-04-28 11:52:14,231 | INFO     | traces error code: 0
[2026-04-28 13:52:14] 2026-04-28 11:52:14,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 13:52:14] 2026-04-28 11:52:14,308 [wrapper] ==== pilot stdout END ====
[2026-04-28 13:52:14] 2026-04-28 11:52:14,312 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 13:52:14] 2026-04-28 11:52:14,316 [wrapper] pilotpid: 301044
[2026-04-28 13:52:14] 2026-04-28 11:52:14,320 [wrapper] Pilot exit status: 0
[2026-04-28 13:52:14] 2026-04-28 11:52:14,332 [wrapper] pandaids: 7116245464
[2026-04-28 13:52:14] 2026-04-28 11:52:14,355 [wrapper] cleanup supervisor_pilot  311439 301045
[2026-04-28 13:52:14] 2026-04-28 11:52:14,359 [wrapper] Test setup, not cleaning
[2026-04-28 13:52:14] 2026-04-28 11:52:14,363 [wrapper] apfmon messages muted
[2026-04-28 13:52:14] 2026-04-28 11:52:14,367 [wrapper] ==== wrapper stdout END ====
[2026-04-28 13:52:14] 2026-04-28 11:52:14,371 [wrapper] ==== wrapper stderr END ====
[2026-04-28 13:52:14]  *** Error codes and diagnostics ***
[2026-04-28 13:52:14]     "exeErrorCode": 0,
[2026-04-28 13:52:14]     "pilotErrorCode": 0,
[2026-04-28 13:52:14]  *** Listing of results directory ***
[2026-04-28 13:52:14] total 627572
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc    683926 Apr 28 01:07 pilot3.tar.gz
[2026-04-28 13:52:14] -rwx------ 1 boinc boinc     36322 Apr 28 01:10 runpilot2-wrapper.sh
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc      5631 Apr 28 01:13 queuedata.json
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc       100 Apr 28 12:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 13:52:14] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 12:36 run_atlas
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc       105 Apr 28 12:36 job.xml
[2026-04-28 13:52:14] -rw-r--r-- 2 boinc boinc 445206835 Apr 28 12:36 EVNT.46373187._000025.pool.root.1
[2026-04-28 13:52:14] -rw-r--r-- 2 boinc boinc    697426 Apr 28 12:36 input.tar.gz
[2026-04-28 13:52:14] -rw-r--r-- 2 boinc boinc     15667 Apr 28 12:36 start_atlas.sh
[2026-04-28 13:52:14] drwxrwx--x 2 boinc boinc      4096 Apr 28 12:36 shared
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc         0 Apr 28 12:36 boinc_setup_complete
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc      6294 Apr 28 12:36 init_data.xml
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc         0 Apr 28 12:36 boinc_lockfile
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc      2594 Apr 28 12:36 pandaJob.out
[2026-04-28 13:52:14] -rw------- 1 boinc boinc    992925 Apr 28 12:36 agis_schedconf.cvmfs.json
[2026-04-28 13:52:14] -rw------- 1 boinc boinc   1512704 Apr 28 12:36 agis_ddmendpoints.agis.ALL.json
[2026-04-28 13:52:14] -rw------- 1 boinc boinc       430 Apr 28 12:37 workernode_map.json
[2026-04-28 13:52:14] drwx------ 5 boinc boinc      4096 Apr 28 12:37 pilot3
[2026-04-28 13:52:14] -rw------- 1 boinc boinc 191924046 Apr 28 13:50 HITS.49718416._012263.pool.root.1
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc       488 Apr 28 13:51 boinc_task_state.xml
[2026-04-28 13:52:14] -rw------- 1 boinc boinc      1022 Apr 28 13:51 memory_monitor_summary.json
[2026-04-28 13:52:14] -rw------- 1 boinc boinc    246207 Apr 28 13:51 log.49718416._012263.job.log.tgz.1
[2026-04-28 13:52:14] -rw------- 1 boinc boinc      6343 Apr 28 13:51 heartbeat_new.json
[2026-04-28 13:52:14] -rw------- 1 boinc boinc      6234 Apr 28 13:51 heartbeat.json
[2026-04-28 13:52:14] -rw------- 1 boinc boinc        95 Apr 28 13:51 pilot_heartbeat.json
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc      8192 Apr 28 13:51 boinc_mmap_file
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc        27 Apr 28 13:51 wrapper_checkpoint.txt
[2026-04-28 13:52:14] -rw------- 1 boinc boinc      5344 Apr 28 13:52 pilotlog.txt
[2026-04-28 13:52:14] -rw------- 1 boinc boinc    441653 Apr 28 13:52 log.49718416._012263.job.log.1
[2026-04-28 13:52:14] -rw------- 1 boinc boinc       357 Apr 28 13:52 output.list
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc       410 Apr 28 13:52 runtime_log
[2026-04-28 13:52:14] -rw------- 1 boinc boinc    706560 Apr 28 13:52 result.tar.gz
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc      8534 Apr 28 13:52 runtime_log.err
[2026-04-28 13:52:14] -rw------- 1 boinc boinc       660 Apr 28 13:52 ecf922a99cf3.diag
[2026-04-28 13:52:14] -rw-r--r-- 1 boinc boinc     11714 Apr 28 13:52 stderr.txt
[2026-04-28 13:52:14] HITS file was successfully produced:
[2026-04-28 13:52:14] -rw------- 1 boinc boinc 191924046 Apr 28 13:50 shared/HITS.pool.root.1
[2026-04-28 13:52:14]  *** Contents of shared directory: ***
[2026-04-28 13:52:14] total 623604
[2026-04-28 13:52:14] -rw-r--r-- 2 boinc boinc 445206835 Apr 28 12:36 ATLAS.root_0
[2026-04-28 13:52:14] -rw-r--r-- 2 boinc boinc    697426 Apr 28 12:36 input.tar.gz
[2026-04-28 13:52:14] -rw-r--r-- 2 boinc boinc     15667 Apr 28 12:36 start_atlas.sh
[2026-04-28 13:52:14] -rw------- 1 boinc boinc 191924046 Apr 28 13:50 HITS.pool.root.1
[2026-04-28 13:52:14] -rw------- 1 boinc boinc    706560 Apr 28 13:52 result.tar.gz
13:52:15 (296923): run_atlas exited; CPU time 15866.282533
13:52:15 (296923): called boinc_finish(0)

</stderr_txt>
]]>

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