Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:13:59 (25236): wrapper (7.7.26015): starting
19:13:59 (25236): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 19:13:59] Arguments: --nthreads 8
[2026-04-28 19:13:59] Threads: 8
[2026-04-28 19:13:59] Checking for CVMFS
[2026-04-28 19:14:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 19:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 19:14:03] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 19:14:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 19:14:05] 2.11.2.0 15723 18730 98932 158975 3 1 17486939 25165824 96 130560 0 5069215 99.892 5025890 10503 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 19:14:05] CVMFS is ok
[2026-04-28 19:14:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 19:14:05] Checking for apptainer binary...
[2026-04-28 19:14:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 19:14:05] Running /usr/bin/apptainer --version
[2026-04-28 19:14:05] apptainer version 1.3.2-1.el7
[2026-04-28 19:14:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 19:14:26] cg-vwn428.simple-grid.lan
[2026-04-28 19:14:26] apptainer works
[2026-04-28 19:14:26] Set ATHENA_PROC_NUMBER=8
[2026-04-28 19:14:26] Set ATHENA_CORE_NUMBER=8
[2026-04-28 19:14:27] Starting ATLAS job with PandaID=7116178347
[2026-04-28 19:14:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 23:49:58]  *** The last 200 lines of the pilot log: ***
[2026-04-28 23:49:58] 2026-04-28 21:48:49,873 | INFO     | this job has now completed (state=finished)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,873 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,873 | INFO     | log transfer has been attempted: DONE
[2026-04-28 23:49:58] 2026-04-28 21:48:49,873 | INFO     | job 7116178347 has finished - writing final server update
[2026-04-28 23:49:58] 2026-04-28 21:48:49,873 | INFO     | total number of processed events: 400 (read)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,875 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7116178347/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,876 | INFO     | extracted standard info from prmon json
[2026-04-28 23:49:58] 2026-04-28 21:48:49,876 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 23:49:58] 2026-04-28 21:48:49,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 23:49:58] 2026-04-28 21:48:49,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 23:49:58] 2026-04-28 21:48:49,881 | INFO     | fitting pss+swap vs Time
[2026-04-28 23:49:58] 2026-04-28 21:48:49,882 | INFO     | sum of square deviations: 5141528960.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,884 | INFO     | sum of deviations: 119563338651.99998
[2026-04-28 23:49:58] 2026-04-28 21:48:49,884 | INFO     | mean x (centered): 0.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,884 | INFO     | mean y: 2428400.4823529413
[2026-04-28 23:49:58] 2026-04-28 21:48:49,884 | INFO     | intersect: 2428400.4823529413
[2026-04-28 23:49:58] 2026-04-28 21:48:49,885 | INFO     | chi2: 8.85809467101784
[2026-04-28 23:49:58] 2026-04-28 21:48:49,885 | INFO     | sum of square deviations: 4844974562.5
[2026-04-28 23:49:58] 2026-04-28 21:48:49,887 | INFO     | sum of deviations: 133646446807.5
[2026-04-28 23:49:58] 2026-04-28 21:48:49,887 | INFO     | mean x (centered): 0.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,887 | INFO     | mean y: 2435505.46
[2026-04-28 23:49:58] 2026-04-28 21:48:49,888 | INFO     | intersect: 2435505.46
[2026-04-28 23:49:58] 2026-04-28 21:48:49,888 | INFO     | chi2: 8.169784987394484
[2026-04-28 23:49:58] 2026-04-28 21:48:49,888 | INFO     | current chi2=8.169784987394484 (change=7.770403333748355 %)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,888 | INFO     | right removable region: 249
[2026-04-28 23:49:58] 2026-04-28 21:48:49,892 | INFO     | sum of square deviations: 4844974562.5
[2026-04-28 23:49:58] 2026-04-28 21:48:49,894 | INFO     | sum of deviations: 28518373672.499985
[2026-04-28 23:49:58] 2026-04-28 21:48:49,894 | INFO     | mean x (centered): 0.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,894 | INFO     | mean y: 2475201.428
[2026-04-28 23:49:58] 2026-04-28 21:48:49,894 | INFO     | intersect: 2475201.428
[2026-04-28 23:49:58] 2026-04-28 21:48:49,895 | INFO     | chi2: 3.532870315958472
[2026-04-28 23:49:58] 2026-04-28 21:48:49,895 | INFO     | current chi2=3.532870315958472 (change=60.11704043401777 %)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,895 | INFO     | sum of square deviations: 4560048290.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,897 | INFO     | sum of deviations: -35832818921.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,897 | INFO     | mean x (centered): 0.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,897 | INFO     | mean y: 2509592.3836734695
[2026-04-28 23:49:58] 2026-04-28 21:48:49,897 | INFO     | intersect: 2509592.3836734695
[2026-04-28 23:49:58] 2026-04-28 21:48:49,898 | INFO     | chi2: 1.031933661404016
[2026-04-28 23:49:58] 2026-04-28 21:48:49,898 | INFO     | current chi2=1.031933661404016 (change=70.79050264758865 %)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,898 | INFO     | sum of square deviations: 4286517580.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,900 | INFO     | sum of deviations: -45173361845.5
[2026-04-28 23:49:58] 2026-04-28 21:48:49,900 | INFO     | mean x (centered): 0.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,901 | INFO     | mean y: 2514761.6375
[2026-04-28 23:49:58] 2026-04-28 21:48:49,901 | INFO     | intersect: 2514761.6375
[2026-04-28 23:49:58] 2026-04-28 21:48:49,901 | INFO     | chi2: 0.9387470476486054
[2026-04-28 23:49:58] 2026-04-28 21:48:49,901 | INFO     | current chi2=0.9387470476486054 (change=9.030291116642504 %)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,901 | INFO     | left removable region: 15
[2026-04-28 23:49:58] 2026-04-28 21:48:49,902 | INFO     | sum of square deviations: 3972995422.5
[2026-04-28 23:49:58] 2026-04-28 21:48:49,904 | INFO     | sum of deviations: -28642105005.000004
[2026-04-28 23:49:58] 2026-04-28 21:48:49,904 | INFO     | mean x (centered): 0.0
[2026-04-28 23:49:58] 2026-04-28 21:48:49,904 | INFO     | mean y: 2524217.1965811965
[2026-04-28 23:49:58] 2026-04-28 21:48:49,904 | INFO     | intersect: 2524217.1965811965
[2026-04-28 23:49:58] 2026-04-28 21:48:49,904 | INFO     | chi2: 0.1526448138955166
[2026-04-28 23:49:58] 2026-04-28 21:48:49,905 | INFO     | current memory leak: -7.21 B/s (using 234 data points, chi2=0.15)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,905 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-28 23:49:58] 2026-04-28 21:48:49,905 | INFO     | ..............................
[2026-04-28 23:49:58] 2026-04-28 21:48:49,905 | INFO     | . Timing measurements:
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . get job = 0 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . initial setup = 123 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . payload setup = 259 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . stage-in = 0 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . payload execution = 15644 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . stage-out = 4 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | . log creation = 1 s
[2026-04-28 23:49:58] 2026-04-28 21:48:49,906 | INFO     | ..............................
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | 
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | job summary report
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | --------------------------------------------------
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | PanDA job id: 7116178347
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | task id: 49263191
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | errors: (none)
[2026-04-28 23:49:58] 2026-04-28 21:48:50,170 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | pilot state: finished 
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | transexitcode: 0
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | exeerrorcode: 0
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | exeerrordiag: 
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | exitcode: 0
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | exitmsg: OK
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | cpuconsumptiontime: 58796 s
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | nevents: 400
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | neventsw: 0
[2026-04-28 23:49:58] 2026-04-28 21:48:50,171 | INFO     | pid: 1288
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | pgrp: 1288
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | corecount: 8
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | event service: False
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | sizes: {0: 2280052, 1: 2280737, 2: 2281138, 3: 2282566, 13: 2282594, 15908: 2314113, 15914: 2323111, 15915: 2323167, 15916: 2323361}
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | --------------------------------------------------
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | 
[2026-04-28 23:49:58] 2026-04-28 21:48:50,172 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-28 23:49:58] 2026-04-28 21:48:50,576 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,579 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 23:49:58] 2026-04-28 21:48:50,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,579 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 23:49:58] 2026-04-28 21:48:50,579 | INFO     | job 7116178347 has completed (purged errors)
[2026-04-28 23:49:58] 2026-04-28 21:48:50,579 | INFO     | overall cleanup function is called
[2026-04-28 23:49:58] 2026-04-28 21:48:51,588 | INFO     | --- collectZombieJob: --- 10, [1288]
[2026-04-28 23:49:58] 2026-04-28 21:48:51,588 | INFO     | zombie collector waiting for pid 1288
[2026-04-28 23:49:58] 2026-04-28 21:48:51,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 23:49:58] 2026-04-28 21:48:51,588 | INFO     | collected zombie processes
[2026-04-28 23:49:58] 2026-04-28 21:48:51,588 | INFO     | will attempt to kill all subprocesses of pid=1288
[2026-04-28 23:49:58] 2026-04-28 21:48:51,650 | INFO     | process IDs to be killed: [1288] (in reverse order)
[2026-04-28 23:49:58] 2026-04-28 21:48:52,482 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 23:49:58] 2026-04-28 21:48:52,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 23:49:58] 2026-04-28 21:48:52,484 | INFO     | did not find any defunct processes belonging to 1288
[2026-04-28 23:49:58] 2026-04-28 21:48:52,486 | INFO     | did not find any defunct processes belonging to 1288
[2026-04-28 23:49:58] 2026-04-28 21:48:52,486 | INFO     | Ready for new job
[2026-04-28 23:49:58] 2026-04-28 21:48:52,488 | INFO     | ***************************************
[2026-04-28 23:49:58] 2026-04-28 21:48:52,488 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 23:49:58] 2026-04-28 21:48:52,488 | INFO     | ***************************************
[2026-04-28 23:49:58] 2026-04-28 21:48:52,488 | INFO     | 
[2026-04-28 23:49:58] 2026-04-28 21:48:52,489 | INFO     | pilot is running in a VM
[2026-04-28 23:49:58] 2026-04-28 21:48:52,489 | INFO     | architecture information:
[2026-04-28 23:49:58] 2026-04-28 21:48:52,498 | INFO     | executing command: cat /etc/os-release
[2026-04-28 23:49:58] 2026-04-28 21:48:52,777 | INFO     | cat /etc/os-release:
[2026-04-28 23:49:58] NAME="CentOS Linux"
[2026-04-28 23:49:58] VERSION="7 (Core)"
[2026-04-28 23:49:58] ID="centos"
[2026-04-28 23:49:58] ID_LIKE="rhel fedora"
[2026-04-28 23:49:58] VERSION_ID="7"
[2026-04-28 23:49:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 23:49:58] ANSI_COLOR="0;31"
[2026-04-28 23:49:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 23:49:58] HOME_URL="https://www.centos.org/"
[2026-04-28 23:49:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 23:49:58] 
[2026-04-28 23:49:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 23:49:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 23:49:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 23:49:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 23:49:58] 
[2026-04-28 23:49:58] 2026-04-28 21:48:52,778 | INFO     | ***************************************
[2026-04-28 23:49:58] 2026-04-28 21:48:53,281 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-28 23:49:58] 2026-04-28 21:48:53,503 | INFO     | sufficient remaining disk space (494181285888 B)
[2026-04-28 23:49:58] 2026-04-28 21:48:53,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 23:49:58] 2026-04-28 21:48:53,504 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 23:49:58] 2026-04-28 21:48:53,504 | INFO     | update_server=False
[2026-04-28 23:49:58] 2026-04-28 21:48:53,504 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 23:49:58] 2026-04-28 21:48:53,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 23:49:58] 2026-04-28 21:48:53,506 | INFO     | aborting loop
[2026-04-28 23:49:58] 2026-04-28 21:48:53,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 23:49:58] 2026-04-28 21:48:54,397 | INFO     | all job control threads have been joined
[2026-04-28 23:49:58] 2026-04-28 21:48:54,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 23:49:58] 2026-04-28 21:48:54,482 | INFO     | all data control threads have been joined
[2026-04-28 23:49:58] 2026-04-28 21:48:54,510 | INFO     | [job] retrieve thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:54,512 | INFO     | [job] job monitor thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:54,538 | INFO     | [job] validate thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:54,708 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:54,851 | INFO     | [data] copytool_in thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:54,864 | INFO     | all payload control threads have been joined
[2026-04-28 23:49:58] 2026-04-28 21:48:55,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 23:49:58] 2026-04-28 21:48:55,068 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,403 | INFO     | [job] control thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,456 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,488 | INFO     | [data] control thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,785 | INFO     | [data] copytool_out thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,848 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,870 | INFO     | [payload] control thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:55,876 | INFO     | [payload] failed_post thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:56,003 | INFO     | [payload] validate_post thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:56,072 | INFO     | [job] queue monitor thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:48:58,441 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 23:49:58] 2026-04-28 21:49:23,147 | INFO     | PID=29238 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-28 23:49:58] 2026-04-28 21:49:23,148 | INFO     | .. there are 2 such processes running
[2026-04-28 23:49:58] 2026-04-28 21:49:23,153 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 23:49:58] 2026-04-28 21:49:23,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 23:49:58] 2026-04-28 21:49:23,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 23:49:58] 2026-04-28 21:49:47,526 | INFO     | [monitor] cgroup control has ended
[2026-04-28 23:49:58] 2026-04-28 21:49:48,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139676687492928)>', '<ExcThread(monitor, started 139676010665728)>']
[2026-04-28 23:49:58] 2026-04-28 21:49:48,303 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 23:49:58] 2026-04-28 21:49:48,303 | INFO     | [monitor] control thread has ended
[2026-04-28 23:49:58] 2026-04-28 21:49:53,027 | INFO     | all workflow threads have been joined
[2026-04-28 23:49:58] 2026-04-28 21:49:53,027 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 23:49:58] 2026-04-28 21:49:53,027 | INFO     | traces error code: 0
[2026-04-28 23:49:58] 2026-04-28 21:49:53,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 23:49:58] 2026-04-28 21:49:53,394 [wrapper] ==== pilot stdout END ====
[2026-04-28 23:49:58] 2026-04-28 21:49:53,508 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 23:49:58] 2026-04-28 21:49:53,618 [wrapper] pilotpid: 29238
[2026-04-28 23:49:58] 2026-04-28 21:49:53,703 [wrapper] Pilot exit status: 0
[2026-04-28 23:49:58] 2026-04-28 21:49:54,193 [wrapper] pandaids: 7116178347
[2026-04-28 23:49:58] 2026-04-28 21:49:55,301 [wrapper] cleanup supervisor_pilot  8202 29239
[2026-04-28 23:49:58] 2026-04-28 21:49:55,365 [wrapper] Test setup, not cleaning
[2026-04-28 23:49:58] 2026-04-28 21:49:55,456 [wrapper] apfmon messages muted
[2026-04-28 23:49:58] 2026-04-28 21:49:55,570 [wrapper] ==== wrapper stdout END ====
[2026-04-28 23:49:58] 2026-04-28 21:49:55,647 [wrapper] ==== wrapper stderr END ====
[2026-04-28 23:49:58]  *** Error codes and diagnostics ***
[2026-04-28 23:49:58]     "exeErrorCode": 0,
[2026-04-28 23:49:58]     "pilotErrorCode": 0,
[2026-04-28 23:49:58]  *** Listing of results directory ***
[2026-04-28 23:49:58] total 419444
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc    683926 Apr 28 01:07 pilot3.tar.gz
[2026-04-28 23:49:58] -rwx------. 1 boinc boinc     36322 Apr 28 01:10 runpilot2-wrapper.sh
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc      5631 Apr 28 01:13 queuedata.json
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc       100 Apr 28 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 23:49:58] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 19:13 run_atlas
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc       105 Apr 28 19:13 job.xml
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc      6306 Apr 28 19:13 init_data.xml
[2026-04-28 23:49:58] -rw-r--r--. 2 boinc boinc 224159163 Apr 28 19:13 EVNT.49263189._000550.pool.root.1
[2026-04-28 23:49:58] -rw-r--r--. 2 boinc boinc     15667 Apr 28 19:13 start_atlas.sh
[2026-04-28 23:49:58] drwxrwx--x. 2 boinc boinc        68 Apr 28 19:13 shared
[2026-04-28 23:49:58] -rw-r--r--. 2 boinc boinc    697420 Apr 28 19:13 input.tar.gz
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc         0 Apr 28 19:13 boinc_lockfile
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc      2575 Apr 28 19:14 pandaJob.out
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc       415 Apr 28 19:23 workernode_map.json
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc   1001823 Apr 28 19:23 agis_schedconf.cvmfs.json
[2026-04-28 23:49:58] drwx------. 5 boinc boinc      4096 Apr 28 19:23 pilot3
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc 197450216 Apr 28 23:47 HITS.49263191._080508.pool.root.1
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc       489 Apr 28 23:47 boinc_task_state.xml
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc      1013 Apr 28 23:48 memory_monitor_summary.json
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc   1512704 Apr 28 23:48 agis_ddmendpoints.agis.ALL.json
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc    415657 Apr 28 23:48 log.49263191._080508.job.log.tgz.1
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc      6337 Apr 28 23:48 heartbeat_new.json
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc      6228 Apr 28 23:48 heartbeat.json
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc        95 Apr 28 23:49 pilot_heartbeat.json
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc      8192 Apr 28 23:49 boinc_mmap_file
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc        28 Apr 28 23:49 wrapper_checkpoint.txt
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc      4883 Apr 28 23:49 pilotlog.txt
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc   1470530 Apr 28 23:49 log.49263191._080508.job.log.1
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc       357 Apr 28 23:49 output.list
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc       410 Apr 28 23:49 runtime_log
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc   1904640 Apr 28 23:49 result.tar.gz
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc      8439 Apr 28 23:49 runtime_log.err
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc       656 Apr 28 23:49 ecee530b4769.diag
[2026-04-28 23:49:58] -rw-r--r--. 1 boinc boinc     20599 Apr 28 23:49 stderr.txt
[2026-04-28 23:49:58] HITS file was successfully produced:
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc 197450216 Apr 28 23:47 shared/HITS.pool.root.1
[2026-04-28 23:49:58]  *** Contents of shared directory: ***
[2026-04-28 23:49:58] total 414292
[2026-04-28 23:49:58] -rw-r--r--. 2 boinc boinc 224159163 Apr 28 19:13 ATLAS.root_0
[2026-04-28 23:49:58] -rw-r--r--. 2 boinc boinc     15667 Apr 28 19:13 start_atlas.sh
[2026-04-28 23:49:58] -rw-r--r--. 2 boinc boinc    697420 Apr 28 19:13 input.tar.gz
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc 197450216 Apr 28 23:47 HITS.pool.root.1
[2026-04-28 23:49:58] -rw-------. 1 boinc boinc   1904640 Apr 28 23:49 result.tar.gz
23:50:00 (25236): run_atlas exited; CPU time 58958.082945
23:50:00 (25236): called boinc_finish(0)

</stderr_txt>
]]>

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