Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:16:43 (3776117): wrapper (7.7.26015): starting
01:16:43 (3776117): wrapper: running run_atlas (--nthreads 12)
[2026-04-28 01:16:43] Arguments: --nthreads 12
[2026-04-28 01:16:43] Threads: 12
[2026-04-28 01:16:43] Checking for CVMFS
[2026-04-28 01:16:43] No cvmfs_config command found, will try listing directly
[2026-04-28 01:16:43] CVMFS is ok
[2026-04-28 01:16:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 01:16:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 01:16:43] Further information can be found at the LHC@home message board.
[2026-04-28 01:16:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 01:16:43] Checking for apptainer binary...
[2026-04-28 01:16:43] which: no apptainer in ((null))
[2026-04-28 01:16:43] apptainer is not installed, using version from CVMFS
[2026-04-28 01:16:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 01:16:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/22/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-04-28 01:16:43] apptainer works
[2026-04-28 01:16:43] Set ATHENA_PROC_NUMBER=12
[2026-04-28 01:16:43] Set ATHENA_CORE_NUMBER=12
[2026-04-28 01:16:43] Starting ATLAS job with PandaID=7116285914
[2026-04-28 01:16:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/22 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 02:10:50]  *** The last 200 lines of the pilot log: ***
[2026-04-28 02:10:50]  filetype=log
[2026-04-28 02:10:50]  guid=b32151bb-52aa-499f-9ac3-bc3e2d765369
[2026-04-28 02:10:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-28 02:10:50]  is_altstaged=None
[2026-04-28 02:10:50]  is_tar=False
[2026-04-28 02:10:50]  lfn=log.49820244._023051.job.log.tgz.1
[2026-04-28 02:10:50]  mtime=0
[2026-04-28 02:10:50]  protocol_id=None
[2026-04-28 02:10:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-28 02:10:50]  replicas=None
[2026-04-28 02:10:50]  scope=mc23_13p6TeV
[2026-04-28 02:10:50]  status=None
[2026-04-28 02:10:50]  status_code=0
[2026-04-28 02:10:50]  storage_token=
[2026-04-28 02:10:50]  surl=/var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116285914/log.49820244._023051.job.log.tgz.1
[2026-04-28 02:10:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/ce/log.49820244._023051.job.log.tgz.1
[2026-04-28 02:10:50]  workdir=None
[2026-04-28 02:10:50] ]
[2026-04-28 02:10:50] 2026-04-28 00:08:57,799 | INFO     | transferring file log.49820244._023051.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116285914/log.49820244._023051.job.log.tgz.1 to /var/lib/
[2026-04-28 02:10:50] 2026-04-28 00:08:57,800 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116285914/log.49820244._023051.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/22/
[2026-04-28 02:10:50] 2026-04-28 00:08:57,816 | INFO     | adding to output.list: log.49820244._023051.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/ce/log.49820244._023051.job.log.tg
[2026-04-28 02:10:50] 2026-04-28 00:08:57,817 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-28 02:10:50] 2026-04-28 00:08:57,817 | INFO     | summary of transferred files:
[2026-04-28 02:10:50] 2026-04-28 00:08:57,817 | INFO     |  -- lfn=log.49820244._023051.job.log.tgz.1, status_code=0, status=transferred
[2026-04-28 02:10:50] 2026-04-28 00:08:57,817 | INFO     | stage-out finished correctly
[2026-04-28 02:10:50] 2026-04-28 00:09:00,524 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 02:10:50] 2026-04-28 00:09:00,572 | INFO     | job 7116285914 has state=finished
[2026-04-28 02:10:50] 2026-04-28 00:09:00,573 | INFO     | preparing for final server update for job 7116285914 in state='finished'
[2026-04-28 02:10:50] 2026-04-28 00:09:00,573 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116285914/jobReport.json
[2026-04-28 02:10:50] 2026-04-28 00:09:00,574 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/22/workernode_map.json
[2026-04-28 02:10:50] 2026-04-28 00:09:00,575 | INFO     | this job has now completed (state=finished)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,575 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,575 | INFO     | log transfer has been attempted: DONE
[2026-04-28 02:10:50] 2026-04-28 00:09:00,575 | INFO     | job 7116285914 has finished - writing final server update
[2026-04-28 02:10:50] 2026-04-28 00:09:00,575 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1562311/.job.ad'
[2026-04-28 02:10:50] 2026-04-28 00:09:00,575 | INFO     | total number of processed events: 400 (read)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,593 | INFO     | using path: /var/lib/boinc/var/slot72/slots/22/PanDA_Pilot-7116285914/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,593 | INFO     | extracted standard info from prmon json
[2026-04-28 02:10:50] 2026-04-28 00:09:00,593 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 02:10:50] 2026-04-28 00:09:00,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 02:10:50] 2026-04-28 00:09:00,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | fitting pss+swap vs Time
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | sum of square deviations: 26400495.0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | sum of deviations: -56512535.0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | mean x (centered): 0.0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | mean y: 2796845.5
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | intersect: 2796845.5
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | chi2: 0.00039044614693015735
[2026-04-28 02:10:50] 2026-04-28 00:09:00,594 | INFO     | current memory leak: -2.14 B/s (using 44 data points, chi2=0.00)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | could have reported an average CPU frequency of 3605 MHz (5 samples)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | ..............................
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . Timing measurements:
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . get job = 0 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . initial setup = 4 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . payload setup = 7 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . stage-in = 0 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . payload execution = 3097 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . stage-out = 0 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | . log creation = 0 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,595 | INFO     | ..............................
[2026-04-28 02:10:50] 2026-04-28 00:09:00,647 | INFO     | 
[2026-04-28 02:10:50] 2026-04-28 00:09:00,647 | INFO     | job summary report
[2026-04-28 02:10:50] 2026-04-28 00:09:00,647 | INFO     | --------------------------------------------------
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | PanDA job id: 7116285914
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | task id: 49820244
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | errors: (none)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | pilot state: finished 
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | transexitcode: 0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | exeerrorcode: 0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | exeerrordiag: 
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | exitcode: 0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | exitmsg: OK
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | cpuconsumptiontime: 33071 s
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | nevents: 400
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | neventsw: 0
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | pid: 3806721
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | pgrp: 3806721
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | corecount: 12
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | event service: False
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | sizes: {0: 2282493, 11: 2282493, 3108: 2308013, 3110: 2317035, 3112: 2317317}
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | --------------------------------------------------
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | 
[2026-04-28 02:10:50] 2026-04-28 00:09:00,648 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/22
[2026-04-28 02:10:50] 2026-04-28 00:09:00,667 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 02:10:50] 2026-04-28 00:09:00,668 | INFO     | job 7116285914 has completed (purged errors)
[2026-04-28 02:10:50] 2026-04-28 00:09:00,669 | INFO     | overall cleanup function is called
[2026-04-28 02:10:50] 2026-04-28 00:09:01,676 | INFO     | --- collectZombieJob: --- 10, [3806721]
[2026-04-28 02:10:50] 2026-04-28 00:09:01,676 | INFO     | zombie collector waiting for pid 3806721
[2026-04-28 02:10:50] 2026-04-28 00:09:01,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 02:10:50] 2026-04-28 00:09:01,677 | INFO     | collected zombie processes
[2026-04-28 02:10:50] 2026-04-28 00:09:01,677 | INFO     | will attempt to kill all subprocesses of pid=3806721
[2026-04-28 02:10:50] 2026-04-28 00:09:01,995 | INFO     | process IDs to be killed: [3806721] (in reverse order)
[2026-04-28 02:10:50] 2026-04-28 00:09:02,158 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 02:10:50] 2026-04-28 00:09:02,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 02:10:50] 2026-04-28 00:09:02,182 | INFO     | did not find any defunct processes belonging to 3806721
[2026-04-28 02:10:50] 2026-04-28 00:09:02,205 | INFO     | did not find any defunct processes belonging to 3806721
[2026-04-28 02:10:50] 2026-04-28 00:09:02,206 | INFO     | Ready for new job
[2026-04-28 02:10:50] 2026-04-28 00:09:02,207 | INFO     | ***************************************
[2026-04-28 02:10:50] 2026-04-28 00:09:02,207 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 02:10:50] 2026-04-28 00:09:02,207 | INFO     | ***************************************
[2026-04-28 02:10:50] 2026-04-28 00:09:02,207 | INFO     | 
[2026-04-28 02:10:50] 2026-04-28 00:09:02,212 | INFO     | architecture information:
[2026-04-28 02:10:50] 2026-04-28 00:09:02,212 | INFO     | executing command: cat /etc/os-release
[2026-04-28 02:10:50] 2026-04-28 00:09:02,228 | INFO     | cat /etc/os-release:
[2026-04-28 02:10:50] NAME="CentOS Linux"
[2026-04-28 02:10:50] VERSION="7 (Core)"
[2026-04-28 02:10:50] ID="centos"
[2026-04-28 02:10:50] ID_LIKE="rhel fedora"
[2026-04-28 02:10:50] VERSION_ID="7"
[2026-04-28 02:10:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 02:10:50] ANSI_COLOR="0;31"
[2026-04-28 02:10:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 02:10:50] HOME_URL="https://www.centos.org/"
[2026-04-28 02:10:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 02:10:50] 
[2026-04-28 02:10:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 02:10:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 02:10:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 02:10:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 02:10:50] 
[2026-04-28 02:10:50] 2026-04-28 00:09:02,228 | INFO     | ***************************************
[2026-04-28 02:10:50] 2026-04-28 00:09:02,731 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/22
[2026-04-28 02:10:50] 2026-04-28 00:09:02,747 | INFO     | sufficient remaining disk space (21635268608 B)
[2026-04-28 02:10:50] 2026-04-28 00:09:02,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 02:10:50] 2026-04-28 00:09:02,748 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 02:10:50] 2026-04-28 00:09:02,748 | INFO     | update_server=False
[2026-04-28 02:10:50] 2026-04-28 00:09:02,748 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 02:10:50] 2026-04-28 00:09:02,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 02:10:50] 2026-04-28 00:09:02,906 | INFO     | all data control threads have been joined
[2026-04-28 02:10:50] 2026-04-28 00:09:03,201 | WARNING  | process 3806721 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 02:10:50] 2026-04-28 00:09:03,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 02:10:50] 2026-04-28 00:09:03,391 | INFO     | using path: /var/lib/boinc/var/slot72/slots/22/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 02:10:50] 2026-04-28 00:09:03,507 | INFO     | all payload control threads have been joined
[2026-04-28 02:10:50] 2026-04-28 00:09:03,605 | INFO     | number of running child processes to parent process 3806721: 1
[2026-04-28 02:10:50] 2026-04-28 00:09:03,605 | INFO     | maximum number of monitored processes: 6
[2026-04-28 02:10:50] 2026-04-28 00:09:03,605 | INFO     | aborting job monitoring since job object (job id=7116285914) has expired
[2026-04-28 02:10:50] 2026-04-28 00:09:03,605 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 02:10:50] 2026-04-28 00:09:03,605 | INFO     | will abort loop
[2026-04-28 02:10:50] 2026-04-28 00:09:03,753 | INFO     | [job] retrieve thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:03,771 | INFO     | [payload] validate_post thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:03,911 | INFO     | [data] control thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,134 | INFO     | all job control threads have been joined
[2026-04-28 02:10:50] 2026-04-28 00:09:04,180 | INFO     | [job] validate thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,181 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,512 | INFO     | [payload] control thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,610 | INFO     | [job] job monitor thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,636 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,642 | INFO     | [data] copytool_in thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,699 | INFO     | [payload] failed_post thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:04,826 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:05,139 | INFO     | [job] control thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:05,378 | INFO     | [data] copytool_out thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:05,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 02:10:50] 2026-04-28 00:09:06,660 | INFO     | [job] queue monitor thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:06,754 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:13,675 | INFO     | job.realtimelogging is not enabled
[2026-04-28 02:10:50] 2026-04-28 00:09:14,680 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 02:10:50] 2026-04-28 00:09:33,622 | INFO     | PID=3788143 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 02:10:50] 2026-04-28 00:09:33,626 | INFO     | .. there are 15 such processes running
[2026-04-28 02:10:50] 2026-04-28 00:09:33,626 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 02:10:50] 2026-04-28 00:09:33,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 02:10:50] 2026-04-28 00:09:33,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 02:10:50] 2026-04-28 00:10:01,379 | INFO     | [monitor] cgroup control has ended
[2026-04-28 02:10:50] 2026-04-28 00:10:02,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22376831260480)>', '<ExcThread(monitor, started 22376598488832)>']
[2026-04-28 02:10:50] 2026-04-28 00:10:02,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 02:10:50] 2026-04-28 00:10:02,771 | INFO     | [monitor] control thread has ended
[2026-04-28 02:10:50] 2026-04-28 00:10:07,357 | INFO     | all workflow threads have been joined
[2026-04-28 02:10:50] 2026-04-28 00:10:07,357 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 02:10:50] 2026-04-28 00:10:07,357 | INFO     | traces error code: 0
[2026-04-28 02:10:50] 2026-04-28 00:10:07,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 02:10:50] 2026-04-28 00:10:07,494 [wrapper] ==== pilot stdout END ====
[2026-04-28 02:10:50] 2026-04-28 00:10:07,496 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 02:10:50] 2026-04-28 00:10:07,498 [wrapper] pilotpid: 3788143
[2026-04-28 02:10:50] 2026-04-28 00:10:07,500 [wrapper] Pilot exit status: 0
[2026-04-28 02:10:50] 2026-04-28 00:10:07,506 [wrapper] pandaids: 7116285914
[2026-04-28 02:10:50] 2026-04-28 00:10:07,628 [wrapper] cleanup supervisor_pilot 4098020 3788144
[2026-04-28 02:10:50] 2026-04-28 00:10:07,631 [wrapper] Test setup, not cleaning
[2026-04-28 02:10:50] 2026-04-28 00:10:07,633 [wrapper] apfmon messages muted
[2026-04-28 02:10:50] 2026-04-28 00:10:07,635 [wrapper] ==== wrapper stdout END ====
[2026-04-28 02:10:50] 2026-04-28 00:10:07,638 [wrapper] ==== wrapper stderr END ====
[2026-04-28 02:10:50]  *** Error codes and diagnostics ***
[2026-04-28 02:10:50]     "exeErrorCode": 0,
[2026-04-28 02:10:50]     "pilotErrorCode": 0,
[2026-04-28 02:10:50]  *** Listing of results directory ***
[2026-04-28 02:10:50] total 2448508
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc     683926 Apr 27 20:12 pilot3.tar.gz
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc       5631 Apr 27 20:38 queuedata.json
[2026-04-28 02:10:50] -rwx------. 1 boinc boinc      36322 Apr 27 20:38 runpilot2-wrapper.sh
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc        100 Apr 28 01:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 02:10:50] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 01:16 run_atlas
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc        105 Apr 28 01:16 job.xml
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc       6628 Apr 28 01:16 init_data.xml
[2026-04-28 02:10:50] -rw-r--r--. 2 boinc boinc 2230511963 Apr 28 01:16 EVNT.49820242._000061.pool.root.1
[2026-04-28 02:10:50] -rw-r--r--. 2 boinc boinc      15667 Apr 28 01:16 start_atlas.sh
[2026-04-28 02:10:50] drwxrwx--x. 2 boinc boinc       4096 Apr 28 01:16 shared
[2026-04-28 02:10:50] -rw-r--r--. 2 boinc boinc     697402 Apr 28 01:16 input.tar.gz
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc          0 Apr 28 01:16 boinc_lockfile
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc       2551 Apr 28 01:16 pandaJob.out
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc     997422 Apr 28 01:16 agis_schedconf.cvmfs.json
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc    1512704 Apr 28 01:16 agis_ddmendpoints.agis.ALL.json
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc        444 Apr 28 01:16 workernode_map.json
[2026-04-28 02:10:50] drwx------. 5 boinc boinc       4096 Apr 28 01:16 pilot3
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc  271203273 Apr 28 02:08 HITS.49820244._023051.pool.root.1
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc        487 Apr 28 02:08 boinc_task_state.xml
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc       1030 Apr 28 02:08 memory_monitor_summary.json
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc     373704 Apr 28 02:08 log.49820244._023051.job.log.tgz.1
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc         95 Apr 28 02:08 pilot_heartbeat.json
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc       6375 Apr 28 02:09 heartbeat_new.json
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc       6266 Apr 28 02:09 heartbeat.json
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc       5438 Apr 28 02:10 pilotlog.txt
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc     335438 Apr 28 02:10 log.49820244._023051.job.log.1
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc        357 Apr 28 02:10 output.list
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc        410 Apr 28 02:10 runtime_log
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc     727040 Apr 28 02:10 result.tar.gz
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc       8846 Apr 28 02:10 runtime_log.err
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc        663 Apr 28 02:10 ad2f516b99d3.diag
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc         26 Apr 28 02:10 wrapper_checkpoint.txt
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc       8192 Apr 28 02:10 boinc_mmap_file
[2026-04-28 02:10:50] -rw-r--r--. 1 boinc boinc      21079 Apr 28 02:10 stderr.txt
[2026-04-28 02:10:50] HITS file was successfully produced:
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc 271203273 Apr 28 02:08 shared/HITS.pool.root.1
[2026-04-28 02:10:50]  *** Contents of shared directory: ***
[2026-04-28 02:10:50] total 2444504
[2026-04-28 02:10:50] -rw-r--r--. 2 boinc boinc 2230511963 Apr 28 01:16 ATLAS.root_0
[2026-04-28 02:10:50] -rw-r--r--. 2 boinc boinc      15667 Apr 28 01:16 start_atlas.sh
[2026-04-28 02:10:50] -rw-r--r--. 2 boinc boinc     697402 Apr 28 01:16 input.tar.gz
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc  271203273 Apr 28 02:08 HITS.pool.root.1
[2026-04-28 02:10:50] -rw-------. 1 boinc boinc     727040 Apr 28 02:10 result.tar.gz
02:10:51 (3776117): run_atlas exited; CPU time 33164.331480
02:10:51 (3776117): called boinc_finish(0)

</stderr_txt>
]]>

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