Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:06:49 (3897550): wrapper (7.7.26015): starting
06:06:49 (3897550): wrapper: running run_atlas (--nthreads 4)
[2026-04-28 06:06:49] Arguments: --nthreads 4
[2026-04-28 06:06:49] Threads: 4
[2026-04-28 06:06:49] Checking for CVMFS
[2026-04-28 06:06:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 06:06:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 06:06:50] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 06:06:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 06:06:50] 2.9.2.0 3615773 2124 84804 158952 3 50 32044648 36864000 0 130560 0 1052655 99.985 75335 15876 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-28 06:06:50] CVMFS is ok
[2026-04-28 06:06:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 06:06:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 06:06:50] Further information can be found at the LHC@home message board.
[2026-04-28 06:06:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 06:06:50] Checking for apptainer binary...
[2026-04-28 06:06:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 06:06:50] Running /usr/bin/apptainer --version
[2026-04-28 06:06:50] apptainer version 1.4.1-1.1
[2026-04-28 06:06:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 06:06:50] iaxoA393
[2026-04-28 06:06:50] apptainer works
[2026-04-28 06:06:50] Set ATHENA_PROC_NUMBER=4
[2026-04-28 06:06:50] Set ATHENA_CORE_NUMBER=4
[2026-04-28 06:06:50] Starting ATLAS job with PandaID=7116291240
[2026-04-28 06:06:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 07:42:16]  *** The last 200 lines of the pilot log: ***
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | job 7116291240 has completed (purged errors)
[2026-04-28 07:42:16] 2026-04-28 05:41:16,793 | INFO     | overall cleanup function is called
[2026-04-28 07:42:16] 2026-04-28 05:41:17,800 | INFO     | --- collectZombieJob: --- 10, [3906174]
[2026-04-28 07:42:16] 2026-04-28 05:41:17,800 | INFO     | zombie collector waiting for pid 3906174
[2026-04-28 07:42:16] 2026-04-28 05:41:17,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 07:42:16] 2026-04-28 05:41:17,800 | INFO     | collected zombie processes
[2026-04-28 07:42:16] 2026-04-28 05:41:17,800 | INFO     | will attempt to kill all subprocesses of pid=3906174
[2026-04-28 07:42:16] 2026-04-28 05:41:17,835 | INFO     | process IDs to be killed: [3906174] (in reverse order)
[2026-04-28 07:42:16] 2026-04-28 05:41:17,867 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 07:42:16] 2026-04-28 05:41:17,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 07:42:16] 2026-04-28 05:41:17,869 | INFO     | did not find any defunct processes belonging to 3906174
[2026-04-28 07:42:16] 2026-04-28 05:41:17,870 | INFO     | did not find any defunct processes belonging to 3906174
[2026-04-28 07:42:16] 2026-04-28 05:41:17,870 | INFO     | Ready for new job
[2026-04-28 07:42:16] 2026-04-28 05:41:17,871 | INFO     | ***************************************
[2026-04-28 07:42:16] 2026-04-28 05:41:17,871 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 07:42:16] 2026-04-28 05:41:17,871 | INFO     | ***************************************
[2026-04-28 07:42:16] 2026-04-28 05:41:17,871 | INFO     | 
[2026-04-28 07:42:16] 2026-04-28 05:41:17,871 | INFO     | architecture information:
[2026-04-28 07:42:16] 2026-04-28 05:41:17,872 | INFO     | executing command: cat /etc/os-release
[2026-04-28 07:42:16] 2026-04-28 05:41:17,885 | INFO     | cat /etc/os-release:
[2026-04-28 07:42:16] NAME="CentOS Linux"
[2026-04-28 07:42:16] VERSION="7 (Core)"
[2026-04-28 07:42:16] ID="centos"
[2026-04-28 07:42:16] ID_LIKE="rhel fedora"
[2026-04-28 07:42:16] VERSION_ID="7"
[2026-04-28 07:42:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 07:42:16] ANSI_COLOR="0;31"
[2026-04-28 07:42:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 07:42:16] HOME_URL="https://www.centos.org/"
[2026-04-28 07:42:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 07:42:16] 
[2026-04-28 07:42:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 07:42:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 07:42:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 07:42:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 07:42:16] 
[2026-04-28 07:42:16] 2026-04-28 05:41:17,885 | INFO     | ***************************************
[2026-04-28 07:42:16] 2026-04-28 05:41:18,287 | WARNING  | process 3906174 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 07:42:16] 2026-04-28 05:41:18,319 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 07:42:16] 2026-04-28 05:41:18,351 | INFO     | number of running child processes to parent process 3906174: 1
[2026-04-28 07:42:16] 2026-04-28 05:41:18,351 | INFO     | maximum number of monitored processes: 6
[2026-04-28 07:42:16] 2026-04-28 05:41:18,351 | INFO     | aborting job monitoring since job object (job id=7116291240) has expired
[2026-04-28 07:42:16] 2026-04-28 05:41:18,388 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-28 07:42:16] 2026-04-28 05:41:18,404 | INFO     | sufficient remaining disk space (323439558656 B)
[2026-04-28 07:42:16] 2026-04-28 05:41:18,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 07:42:16] 2026-04-28 05:41:18,404 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 07:42:16] 2026-04-28 05:41:18,404 | INFO     | update_server=False
[2026-04-28 07:42:16] 2026-04-28 05:41:18,404 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 07:42:16] 2026-04-28 05:41:18,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 07:42:16] 2026-04-28 05:41:18,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 07:42:16] 2026-04-28 05:41:18,405 | INFO     | will abort loop
[2026-04-28 07:42:16] 2026-04-28 05:41:18,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 07:42:16] 2026-04-28 05:41:18,707 | INFO     | all data control threads have been joined
[2026-04-28 07:42:16] 2026-04-28 05:41:18,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 07:42:16] 2026-04-28 05:41:19,070 | INFO     | all job control threads have been joined
[2026-04-28 07:42:16] 2026-04-28 05:41:19,410 | INFO     | [job] retrieve thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:19,410 | INFO     | [job] job monitor thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:19,411 | INFO     | [job] queue monitor thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:19,713 | INFO     | [data] control thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:19,774 | INFO     | all payload control threads have been joined
[2026-04-28 07:42:16] 2026-04-28 05:41:19,783 | INFO     | [payload] failed_post thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,071 | INFO     | [job] control thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,208 | INFO     | [payload] validate_post thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,275 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,313 | INFO     | [job] validate thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,444 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,621 | INFO     | [data] copytool_in thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,762 | INFO     | [data] copytool_out thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,780 | INFO     | [payload] control thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,825 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:20,838 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:22,407 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 07:42:16] 2026-04-28 05:41:48,158 | INFO     | PID=3901653 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 07:42:16] 2026-04-28 05:41:48,159 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 07:42:16] 2026-04-28 05:41:48,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 07:42:16] 2026-04-28 05:41:48,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 07:42:16] 2026-04-28 05:42:09,031 | INFO     | [monitor] cgroup control has ended
[2026-04-28 07:42:16] 2026-04-28 05:42:11,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944933840704)>', '<ExcThread(monitor, started 139943850534656)>']
[2026-04-28 07:42:16] 2026-04-28 05:42:11,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 07:42:16] 2026-04-28 05:42:11,280 | INFO     | [monitor] control thread has ended
[2026-04-28 07:42:16] 2026-04-28 05:42:16,152 | INFO     | all workflow threads have been joined
[2026-04-28 07:42:16] 2026-04-28 05:42:16,152 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 07:42:16] 2026-04-28 05:42:16,152 | INFO     | traces error code: 0
[2026-04-28 07:42:16] 2026-04-28 05:42:16,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 07:42:16] 2026-04-28 05:42:16,218 [wrapper] ==== pilot stdout END ====
[2026-04-28 07:42:16] 2026-04-28 05:42:16,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 07:42:16] 2026-04-28 05:42:16,226 [wrapper] pilotpid: 3901653
[2026-04-28 07:42:16] 2026-04-28 05:42:16,230 [wrapper] Pilot exit status: 0
[2026-04-28 07:42:16] 2026-04-28 05:42:16,241 [wrapper] pandaids: 7116291240
[2026-04-28 07:42:16] 2026-04-28 05:42:16,263 [wrapper] cleanup supervisor_pilot 3911614 3901654
[2026-04-28 07:42:16] 2026-04-28 05:42:16,267 [wrapper] Test setup, not cleaning
[2026-04-28 07:42:16] 2026-04-28 05:42:16,271 [wrapper] apfmon messages muted
[2026-04-28 07:42:16] 2026-04-28 05:42:16,275 [wrapper] ==== wrapper stdout END ====
[2026-04-28 07:42:16] 2026-04-28 05:42:16,278 [wrapper] ==== wrapper stderr END ====
[2026-04-28 07:42:16]  *** Error codes and diagnostics ***
[2026-04-28 07:42:16]     "exeErrorCode": 0,
[2026-04-28 07:42:16]     "pilotErrorCode": 0,
[2026-04-28 07:42:16]  *** Listing of results directory ***
[2026-04-28 07:42:16] total 471932
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc    683926 Apr 27 20:12 pilot3.tar.gz
[2026-04-28 07:42:16] -rwx------ 1 boinc boinc     36322 Apr 27 20:39 runpilot2-wrapper.sh
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc      5631 Apr 27 20:40 queuedata.json
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc       100 Apr 28 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 07:42:16] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 06:06 run_atlas
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc       105 Apr 28 06:06 job.xml
[2026-04-28 07:42:16] -rw-r--r-- 2 boinc boinc 261882126 Apr 28 06:06 EVNT.49863858._000045.pool.root.1
[2026-04-28 07:42:16] -rw-r--r-- 2 boinc boinc    697417 Apr 28 06:06 input.tar.gz
[2026-04-28 07:42:16] -rw-r--r-- 2 boinc boinc     15667 Apr 28 06:06 start_atlas.sh
[2026-04-28 07:42:16] drwxrwx--x 2 boinc boinc      4096 Apr 28 06:06 shared
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc         0 Apr 28 06:06 boinc_setup_complete
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc      6287 Apr 28 06:06 init_data.xml
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc         0 Apr 28 06:06 boinc_lockfile
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc      2584 Apr 28 06:06 pandaJob.out
[2026-04-28 07:42:16] -rw------- 1 boinc boinc    996684 Apr 28 06:06 agis_schedconf.cvmfs.json
[2026-04-28 07:42:16] -rw------- 1 boinc boinc   1512704 Apr 28 06:06 agis_ddmendpoints.agis.ALL.json
[2026-04-28 07:42:16] -rw------- 1 boinc boinc       429 Apr 28 06:07 workernode_map.json
[2026-04-28 07:42:16] drwx------ 5 boinc boinc      4096 Apr 28 06:07 pilot3
[2026-04-28 07:42:16] -rw------- 1 boinc boinc 215656524 Apr 28 07:40 HITS.49863860._001110.pool.root.1
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc       487 Apr 28 07:40 boinc_task_state.xml
[2026-04-28 07:42:16] -rw------- 1 boinc boinc      1040 Apr 28 07:41 memory_monitor_summary.json
[2026-04-28 07:42:16] -rw------- 1 boinc boinc    248315 Apr 28 07:41 log.49863860._001110.job.log.tgz.1
[2026-04-28 07:42:16] -rw------- 1 boinc boinc      6339 Apr 28 07:41 heartbeat_new.json
[2026-04-28 07:42:16] -rw------- 1 boinc boinc      6230 Apr 28 07:41 heartbeat.json
[2026-04-28 07:42:16] -rw------- 1 boinc boinc        95 Apr 28 07:41 pilot_heartbeat.json
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc      8192 Apr 28 07:41 boinc_mmap_file
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc        27 Apr 28 07:41 wrapper_checkpoint.txt
[2026-04-28 07:42:16] -rw------- 1 boinc boinc      5275 Apr 28 07:42 pilotlog.txt
[2026-04-28 07:42:16] -rw------- 1 boinc boinc    547561 Apr 28 07:42 log.49863860._001110.job.log.1
[2026-04-28 07:42:16] -rw------- 1 boinc boinc       357 Apr 28 07:42 output.list
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc       410 Apr 28 07:42 runtime_log
[2026-04-28 07:42:16] -rw------- 1 boinc boinc    808960 Apr 28 07:42 result.tar.gz
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc      8529 Apr 28 07:42 runtime_log.err
[2026-04-28 07:42:16] -rw------- 1 boinc boinc       659 Apr 28 07:42 ad677b1d0b26.diag
[2026-04-28 07:42:16] -rw-r--r-- 1 boinc boinc     12454 Apr 28 07:42 stderr.txt
[2026-04-28 07:42:16] HITS file was successfully produced:
[2026-04-28 07:42:16] -rw------- 1 boinc boinc 215656524 Apr 28 07:40 shared/HITS.pool.root.1
[2026-04-28 07:42:16]  *** Contents of shared directory: ***
[2026-04-28 07:42:16] total 467852
[2026-04-28 07:42:16] -rw-r--r-- 2 boinc boinc 261882126 Apr 28 06:06 ATLAS.root_0
[2026-04-28 07:42:16] -rw-r--r-- 2 boinc boinc    697417 Apr 28 06:06 input.tar.gz
[2026-04-28 07:42:16] -rw-r--r-- 2 boinc boinc     15667 Apr 28 06:06 start_atlas.sh
[2026-04-28 07:42:16] -rw------- 1 boinc boinc 215656524 Apr 28 07:40 HITS.pool.root.1
[2026-04-28 07:42:16] -rw------- 1 boinc boinc    808960 Apr 28 07:42 result.tar.gz
07:42:17 (3897550): run_atlas exited; CPU time 20696.431937
07:42:17 (3897550): called boinc_finish(0)

</stderr_txt>
]]>

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