Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:06:50 (63047): wrapper (7.7.26015): starting
12:06:50 (63047): wrapper: running run_atlas (--nthreads 10)
[2026-04-27 12:06:50] Arguments: --nthreads 10
[2026-04-27 12:06:50] Threads: 10
[2026-04-27 12:06:50] Checking for CVMFS
[2026-04-27 12:06:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 12:06:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 12:06:50] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 12:06:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 12:06:50] 2.13.3.0 13170 9 47172 158933 2 188 32922484 40960000 2736 16776704 0 148083 99.991 379 16478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-27 12:06:50] CVMFS is ok
[2026-04-27 12:06:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 12:06:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 12:06:50] Further information can be found at the LHC@home message board.
[2026-04-27 12:06:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 12:06:50] Checking for apptainer binary...
[2026-04-27 12:06:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 12:06:50] Running /usr/bin/apptainer --version
[2026-04-27 12:06:50] apptainer version 1.4.5-2.el9
[2026-04-27 12:06:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 12:06:50] c6-8-12-2.aglt2.org
[2026-04-27 12:06:50] apptainer works
[2026-04-27 12:06:50] Set ATHENA_PROC_NUMBER=10
[2026-04-27 12:06:50] Set ATHENA_CORE_NUMBER=10
[2026-04-27 12:06:50] Starting ATLAS job with PandaID=7116267220
[2026-04-27 12:06:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-27 16:13:53]  *** The last 200 lines of the pilot log: ***
[2026-04-27 16:13:53] 2026-04-27 20:13:15,524 | INFO     | log transfer has been attempted: DONE
[2026-04-27 16:13:53] 2026-04-27 20:13:15,525 | INFO     | job 7116267220 has finished - writing final server update
[2026-04-27 16:13:53] 2026-04-27 20:13:15,525 | INFO     | total number of processed events: 400 (read)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,651 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7116267220/memory_monitor_summary.json (trf name=prmon)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,652 | INFO     | extracted standard info from prmon json
[2026-04-27 16:13:53] 2026-04-27 20:13:15,652 | INFO     | extracted standard memory fields from prmon json
[2026-04-27 16:13:53] 2026-04-27 20:13:15,662 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-27 16:13:53] 2026-04-27 20:13:15,662 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-27 16:13:53] 2026-04-27 20:13:15,676 | INFO     | fitting pss+swap vs Time
[2026-04-27 16:13:53] 2026-04-27 20:13:15,677 | INFO     | sum of square deviations: 4394378308.714847
[2026-04-27 16:13:53] 2026-04-27 20:13:15,678 | INFO     | sum of deviations: 37826320320.62401
[2026-04-27 16:13:53] 2026-04-27 20:13:15,678 | INFO     | mean x (centered): 0.0
[2026-04-27 16:13:53] 2026-04-27 20:13:15,678 | INFO     | mean y: 2642952.6570247933
[2026-04-27 16:13:53] 2026-04-27 20:13:15,678 | INFO     | intersect: 2642952.6570247933
[2026-04-27 16:13:53] 2026-04-27 20:13:15,679 | INFO     | chi2: 1.9554332530075618
[2026-04-27 16:13:53] 2026-04-27 20:13:15,679 | INFO     | sum of square deviations: 4127598315.628676
[2026-04-27 16:13:53] 2026-04-27 20:13:15,697 | INFO     | sum of deviations: 53092713315.358665
[2026-04-27 16:13:53] 2026-04-27 20:13:15,697 | INFO     | mean x (centered): 0.0
[2026-04-27 16:13:53] 2026-04-27 20:13:15,697 | INFO     | mean y: 2651522.324894515
[2026-04-27 16:13:53] 2026-04-27 20:13:15,697 | INFO     | intersect: 2651522.324894515
[2026-04-27 16:13:53] 2026-04-27 20:13:15,698 | INFO     | chi2: 1.2490480415692744
[2026-04-27 16:13:53] 2026-04-27 20:13:15,698 | INFO     | current chi2=1.2490480415692744 (change=36.12423028767813 %)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,719 | INFO     | sum of square deviations: 3871841785.017244
[2026-04-27 16:13:53] 2026-04-27 20:13:15,720 | INFO     | sum of deviations: 51714968043.06031
[2026-04-27 16:13:53] 2026-04-27 20:13:15,721 | INFO     | mean x (centered): 0.0
[2026-04-27 16:13:53] 2026-04-27 20:13:15,721 | INFO     | mean y: 2650700.7370689656
[2026-04-27 16:13:53] 2026-04-27 20:13:15,721 | INFO     | intersect: 2650700.7370689656
[2026-04-27 16:13:53] 2026-04-27 20:13:15,721 | INFO     | chi2: 1.2489284111275427
[2026-04-27 16:13:53] 2026-04-27 20:13:15,722 | INFO     | current chi2=1.2489284111275427 (change=0.009577729418748987 %)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,722 | INFO     | right removable region: 231
[2026-04-27 16:13:53] 2026-04-27 20:13:15,722 | INFO     | sum of square deviations: 4127548295.628676
[2026-04-27 16:13:53] 2026-04-27 20:13:15,747 | INFO     | sum of deviations: 68529654.30379295
[2026-04-27 16:13:53] 2026-04-27 20:13:15,747 | INFO     | mean x (centered): 0.0
[2026-04-27 16:13:53] 2026-04-27 20:13:15,748 | INFO     | mean y: 2664366.898734177
[2026-04-27 16:13:53] 2026-04-27 20:13:15,748 | INFO     | intersect: 2664366.898734177
[2026-04-27 16:13:53] 2026-04-27 20:13:15,748 | INFO     | chi2: 0.720709105942093
[2026-04-27 16:13:53] 2026-04-27 20:13:15,748 | INFO     | current chi2=0.720709105942093 (change=63.14325202184203 %)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,749 | INFO     | sum of square deviations: 3871741745.017244
[2026-04-27 16:13:53] 2026-04-27 20:13:15,771 | INFO     | sum of deviations: -2045537083.060341
[2026-04-27 16:13:53] 2026-04-27 20:13:15,772 | INFO     | mean x (centered): 0.0
[2026-04-27 16:13:53] 2026-04-27 20:13:15,772 | INFO     | mean y: 2665627.2629310344
[2026-04-27 16:13:53] 2026-04-27 20:13:15,772 | INFO     | intersect: 2665627.2629310344
[2026-04-27 16:13:53] 2026-04-27 20:13:15,772 | INFO     | chi2: 0.7193153146927443
[2026-04-27 16:13:53] 2026-04-27 20:13:15,772 | INFO     | current chi2=0.7193153146927443 (change=0.1933916524513391 %)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,772 | INFO     | left removable region: 10
[2026-04-27 16:13:53] 2026-04-27 20:13:15,773 | INFO     | sum of square deviations: 3346720355.3122187
[2026-04-27 16:13:53] 2026-04-27 20:13:15,774 | INFO     | sum of deviations: 12798313641.97738
[2026-04-27 16:13:53] 2026-04-27 20:13:15,774 | INFO     | mean x (centered): 0.0
[2026-04-27 16:13:53] 2026-04-27 20:13:15,774 | INFO     | mean y: 2674678.3212669683
[2026-04-27 16:13:53] 2026-04-27 20:13:15,774 | INFO     | intersect: 2674678.3212669683
[2026-04-27 16:13:53] 2026-04-27 20:13:15,794 | INFO     | chi2: 0.0012772838680752963
[2026-04-27 16:13:53] 2026-04-27 20:13:15,794 | INFO     | current memory leak: 3.82 B/s (using 221 data points, chi2=0.00)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | could have reported an average CPU frequency of 3369 MHz (12 samples)
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | ..............................
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . Timing measurements:
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . get job = 0 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . initial setup = 4 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . payload setup = 6 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . stage-in = 0 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . payload execution = 14738 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . stage-out = 8 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,795 | INFO     | . log creation = 0 s
[2026-04-27 16:13:53] 2026-04-27 20:13:15,796 | INFO     | ..............................
[2026-04-27 16:13:53] 2026-04-27 20:13:17,102 | INFO     | 
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | job summary report
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | --------------------------------------------------
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | PanDA job id: 7116267220
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | task id: 49820375
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | errors: (none)
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | pilot state: finished 
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | transexitcode: 0
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | exeerrorcode: 0
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | exeerrordiag: 
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | exitcode: 0
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | exitmsg: OK
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | cpuconsumptiontime: 65800 s
[2026-04-27 16:13:53] 2026-04-27 20:13:17,105 | INFO     | nevents: 400
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | neventsw: 0
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | pid: 78866
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | pgrp: 78866
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | corecount: 10
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | event service: False
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | sizes: {0: 2276116, 11: 2276116, 14749: 2307297, 14759: 2322641, 14761: 2322697, 14764: 2322891}
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | --------------------------------------------------
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | 
[2026-04-27 16:13:53] 2026-04-27 20:13:17,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-04-27 16:13:53] 2026-04-27 20:13:17,224 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,224 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,224 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,224 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,224 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-27 16:13:53] 2026-04-27 20:13:17,225 | INFO     | job 7116267220 has completed (purged errors)
[2026-04-27 16:13:53] 2026-04-27 20:13:17,226 | INFO     | overall cleanup function is called
[2026-04-27 16:13:53] 2026-04-27 20:13:17,812 | INFO     | PID=66763 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-27 16:13:53] 2026-04-27 20:13:17,813 | INFO     | .. there are 11 such processes running
[2026-04-27 16:13:53] 2026-04-27 20:13:18,234 | INFO     | --- collectZombieJob: --- 10, [78866]
[2026-04-27 16:13:53] 2026-04-27 20:13:18,235 | INFO     | zombie collector waiting for pid 78866
[2026-04-27 16:13:53] 2026-04-27 20:13:18,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-27 16:13:53] 2026-04-27 20:13:18,235 | INFO     | collected zombie processes
[2026-04-27 16:13:53] 2026-04-27 20:13:18,235 | INFO     | will attempt to kill all subprocesses of pid=78866
[2026-04-27 16:13:53] 2026-04-27 20:13:19,290 | INFO     | process IDs to be killed: [78866] (in reverse order)
[2026-04-27 16:13:53] 2026-04-27 20:13:19,397 | WARNING  | found no corresponding commands to process id(s)
[2026-04-27 16:13:53] 2026-04-27 20:13:19,397 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-27 16:13:53] 2026-04-27 20:13:19,445 | INFO     | did not find any defunct processes belonging to 78866
[2026-04-27 16:13:53] 2026-04-27 20:13:19,557 | INFO     | did not find any defunct processes belonging to 78866
[2026-04-27 16:13:53] 2026-04-27 20:13:19,558 | INFO     | Ready for new job
[2026-04-27 16:13:53] 2026-04-27 20:13:19,592 | INFO     | ***************************************
[2026-04-27 16:13:53] 2026-04-27 20:13:19,592 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-27 16:13:53] 2026-04-27 20:13:19,592 | INFO     | ***************************************
[2026-04-27 16:13:53] 2026-04-27 20:13:19,592 | INFO     | 
[2026-04-27 16:13:53] 2026-04-27 20:13:19,595 | INFO     | architecture information:
[2026-04-27 16:13:53] 2026-04-27 20:13:19,602 | INFO     | executing command: cat /etc/os-release
[2026-04-27 16:13:53] 2026-04-27 20:13:19,638 | INFO     | cat /etc/os-release:
[2026-04-27 16:13:53] NAME="CentOS Linux"
[2026-04-27 16:13:53] VERSION="7 (Core)"
[2026-04-27 16:13:53] ID="centos"
[2026-04-27 16:13:53] ID_LIKE="rhel fedora"
[2026-04-27 16:13:53] VERSION_ID="7"
[2026-04-27 16:13:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-27 16:13:53] ANSI_COLOR="0;31"
[2026-04-27 16:13:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-27 16:13:53] HOME_URL="https://www.centos.org/"
[2026-04-27 16:13:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-27 16:13:53] 
[2026-04-27 16:13:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-27 16:13:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-27 16:13:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-27 16:13:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-27 16:13:53] 
[2026-04-27 16:13:53] 2026-04-27 20:13:19,639 | INFO     | ***************************************
[2026-04-27 16:13:53] 2026-04-27 20:13:20,154 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-04-27 16:13:53] 2026-04-27 20:13:20,260 | INFO     | sufficient remaining disk space (59335770112 B)
[2026-04-27 16:13:53] 2026-04-27 20:13:20,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-27 16:13:53] 2026-04-27 20:13:20,260 | INFO     | current server update state: UPDATING_FINAL
[2026-04-27 16:13:53] 2026-04-27 20:13:20,260 | INFO     | update_server=False
[2026-04-27 16:13:53] 2026-04-27 20:13:20,260 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-27 16:13:53] 2026-04-27 20:13:20,261 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-27 16:13:53] 2026-04-27 20:13:20,261 | INFO     | aborting loop
[2026-04-27 16:13:53] 2026-04-27 20:13:20,261 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-27 16:13:53] 2026-04-27 20:13:20,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-27 16:13:53] 2026-04-27 20:13:20,432 | INFO     | all data control threads have been joined
[2026-04-27 16:13:53] 2026-04-27 20:13:20,799 | INFO     | all job control threads have been joined
[2026-04-27 16:13:53] 2026-04-27 20:13:21,199 | INFO     | all payload control threads have been joined
[2026-04-27 16:13:53] 2026-04-27 20:13:21,267 | INFO     | [job] retrieve thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,276 | INFO     | [job] job monitor thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,362 | INFO     | [data] copytool_in thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,441 | INFO     | [data] control thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,493 | INFO     | [job] validate thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,638 | INFO     | [payload] failed_post thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,805 | INFO     | [job] control thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:21,851 | INFO     | [job] create_data_payload thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:22,054 | INFO     | [payload] validate_pre thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:22,054 | INFO     | [payload] execute_payloads thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:22,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-27 16:13:53] 2026-04-27 20:13:22,194 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:22,210 | INFO     | [payload] control thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:22,268 | INFO     | [data] copytool_out thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:22,479 | INFO     | [payload] validate_post thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:23,146 | INFO     | [job] queue monitor thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:24,346 | INFO     | [data] queue_monitor thread has finished
[2026-04-27 16:13:53] 2026-04-27 20:13:27,682 | INFO     | [monitor] cgroup control has ended
[2026-04-27 16:13:53] 2026-04-27 20:13:28,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804288661312)>', '<ExcThread(monitor, started 139803702048512)>']
[2026-04-27 16:13:53] 2026-04-27 20:13:33,414 | INFO     | all workflow threads have been joined
[2026-04-27 16:13:53] 2026-04-27 20:13:33,415 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-27 16:13:53] 2026-04-27 20:13:33,415 | INFO     | traces error code: 0
[2026-04-27 16:13:53] 2026-04-27 20:13:33,415 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-27 16:13:53] 2026-04-27 20:13:51,366 | INFO     | PID=66763 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-27 16:13:53] 2026-04-27 20:13:51,366 | INFO     | .. there are 11 such processes running
[2026-04-27 16:13:53] 2026-04-27 20:13:51,378 | INFO     | found 0 job(s) in 20 queues
[2026-04-27 16:13:53] 2026-04-27 20:13:51,378 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-27 16:13:53] 2026-04-27 20:13:51,378 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-27 16:13:53] 2026-04-27 20:13:51,378 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-27 16:13:53] 2026-04-27 20:13:51,379 | CRITICAL | thread 'MainThread' is not alive
[2026-04-27 16:13:53] 2026-04-27 20:13:51,379 | INFO     | [monitor] control thread has ended
[2026-04-27 16:13:53] 2026-04-27 20:13:52,075 [wrapper] ==== pilot stdout END ====
[2026-04-27 16:13:53] 2026-04-27 20:13:52,079 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-27 16:13:53] 2026-04-27 20:13:52,101 [wrapper] pilotpid: 66763
[2026-04-27 16:13:53] 2026-04-27 20:13:52,135 [wrapper] Pilot exit status: 0
[2026-04-27 16:13:53] 2026-04-27 20:13:52,284 [wrapper] pandaids: 7116267220
[2026-04-27 16:13:53] 2026-04-27 20:13:52,536 [wrapper] cleanup supervisor_pilot  941704 66764
[2026-04-27 16:13:53] 2026-04-27 20:13:52,540 [wrapper] Test setup, not cleaning
[2026-04-27 16:13:53] 2026-04-27 20:13:52,544 [wrapper] apfmon messages muted
[2026-04-27 16:13:53] 2026-04-27 20:13:52,553 [wrapper] ==== wrapper stdout END ====
[2026-04-27 16:13:53] 2026-04-27 20:13:52,592 [wrapper] ==== wrapper stderr END ====
[2026-04-27 16:13:53]  *** Error codes and diagnostics ***
[2026-04-27 16:13:53]     "exeErrorCode": 0,
[2026-04-27 16:13:53]     "pilotErrorCode": 0,
[2026-04-27 16:13:53]  *** Listing of results directory ***
[2026-04-27 16:13:53] total 2452252
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas     683926 Apr 27 08:07 pilot3.tar.gz
[2026-04-27 16:13:53] -rwx------. 1 boincer umatlas      36322 Apr 27 08:10 runpilot2-wrapper.sh
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas       5631 Apr 27 08:11 queuedata.json
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas        100 Apr 27 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-27 16:13:53] -rwxr-xr-x. 1 boincer umatlas       7986 Apr 27 12:06 run_atlas
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas        105 Apr 27 12:06 job.xml
[2026-04-27 16:13:53] -rw-r--r--. 2 boincer umatlas 2230904164 Apr 27 12:06 EVNT.49820373._000051.pool.root.1
[2026-04-27 16:13:53] -rw-r--r--. 2 boincer umatlas      15667 Apr 27 12:06 start_atlas.sh
[2026-04-27 16:13:53] drwxrwx--x. 2 boincer umatlas       4096 Apr 27 12:06 shared
[2026-04-27 16:13:53] -rw-r--r--. 2 boincer umatlas     697427 Apr 27 12:06 input.tar.gz
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas          0 Apr 27 12:06 boinc_lockfile
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas       2584 Apr 27 12:06 pandaJob.out
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas         57 Apr 27 12:06 setup.sh.local
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas     997699 Apr 27 12:06 agis_schedconf.cvmfs.json
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas        441 Apr 27 12:07 workernode_map.json
[2026-04-27 16:13:53] drwx------. 5 boincer umatlas       4096 Apr 27 12:07 pilot3
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas       6755 Apr 27 16:11 init_data.xml
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas  272493218 Apr 27 16:11 HITS.49820375._017125.pool.root.1
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas        488 Apr 27 16:11 boinc_task_state.xml
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas       1052 Apr 27 16:12 memory_monitor_summary.json
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas    1512704 Apr 27 16:13 agis_ddmendpoints.agis.ALL.json
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas     492122 Apr 27 16:13 log.49820375._017125.job.log.tgz.1
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas       6432 Apr 27 16:13 heartbeat_new.json
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas       6323 Apr 27 16:13 heartbeat.json
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas       8192 Apr 27 16:13 boinc_mmap_file
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas         27 Apr 27 16:13 wrapper_checkpoint.txt
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas         95 Apr 27 16:13 pilot_heartbeat.json
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas        891 Apr 27 16:13 pilotlog.txt
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas    1292832 Apr 27 16:13 log.49820375._017125.job.log.1
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas        357 Apr 27 16:13 output.list
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas        410 Apr 27 16:13 runtime_log
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas    1802240 Apr 27 16:13 result.tar.gz
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas       8972 Apr 27 16:13 runtime_log.err
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas        660 Apr 27 16:13 522287eedb31.diag
[2026-04-27 16:13:53] -rw-r--r--. 1 boincer umatlas      21046 Apr 27 16:13 stderr.txt
[2026-04-27 16:13:53] HITS file was successfully produced:
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas 272493218 Apr 27 16:11 shared/HITS.pool.root.1
[2026-04-27 16:13:53]  *** Contents of shared directory: ***
[2026-04-27 16:13:53] total 2447196
[2026-04-27 16:13:53] -rw-r--r--. 2 boincer umatlas 2230904164 Apr 27 12:06 ATLAS.root_0
[2026-04-27 16:13:53] -rw-r--r--. 2 boincer umatlas      15667 Apr 27 12:06 start_atlas.sh
[2026-04-27 16:13:53] -rw-r--r--. 2 boincer umatlas     697427 Apr 27 12:06 input.tar.gz
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas  272493218 Apr 27 16:11 HITS.pool.root.1
[2026-04-27 16:13:53] -rw-------. 1 boincer umatlas    1802240 Apr 27 16:13 result.tar.gz
16:13:54 (63047): run_atlas exited; CPU time 66170.281742
16:13:54 (63047): called boinc_finish(0)

</stderr_txt>
]]>

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