Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:11:21 (3056096): wrapper (7.7.26015): starting
11:11:21 (3056096): wrapper: running run_atlas (--nthreads 12)
[2026-04-28 11:11:21] Arguments: --nthreads 12
[2026-04-28 11:11:21] Threads: 12
[2026-04-28 11:11:21] Checking for CVMFS
[2026-04-28 11:11:21] No cvmfs_config command found, will try listing directly
[2026-04-28 11:11:21] CVMFS is ok
[2026-04-28 11:11:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 11:11:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 11:11:21] Further information can be found at the LHC@home message board.
[2026-04-28 11:11:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 11:11:21] Checking for apptainer binary...
[2026-04-28 11:11:21] which: no apptainer in ((null))
[2026-04-28 11:11:21] apptainer is not installed, using version from CVMFS
[2026-04-28 11:11:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 11:11:21] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-04-28 11:11:21] apptainer works
[2026-04-28 11:11:21] Set ATHENA_PROC_NUMBER=12
[2026-04-28 11:11:21] Set ATHENA_CORE_NUMBER=12
[2026-04-28 11:11:21] Starting ATLAS job with PandaID=7101146053
[2026-04-28 11:11:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 12:00:46]  *** The last 200 lines of the pilot log: ***
[2026-04-28 12:00:46]  surl=/var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/log.49820375._002509.job.log.tgz.1
[2026-04-28 12:00:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/99/log.49820375._002509.job.log.tgz.1
[2026-04-28 12:00:46]  workdir=None
[2026-04-28 12:00:46] ]
[2026-04-28 12:00:46] 2026-04-28 09:59:16,907 | INFO     | transferring file log.49820375._002509.job.log.tgz.1 from /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/log.49820375._002509.job.log.tgz.1 to /var/lib/b
[2026-04-28 12:00:46] 2026-04-28 09:59:16,907 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/log.49820375._002509.job.log.tgz.1 /var/lib/boinc/var/slot96/slots/2/lo
[2026-04-28 12:00:46] 2026-04-28 09:59:16,922 | INFO     | adding to output.list: log.49820375._002509.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/99/log.49820375._002509.job.log.tg
[2026-04-28 12:00:46] 2026-04-28 09:59:16,922 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-28 12:00:46] 2026-04-28 09:59:16,922 | INFO     | summary of transferred files:
[2026-04-28 12:00:46] 2026-04-28 09:59:16,922 | INFO     |  -- lfn=log.49820375._002509.job.log.tgz.1, status_code=0, status=transferred
[2026-04-28 12:00:46] 2026-04-28 09:59:16,923 | INFO     | stage-out finished correctly
[2026-04-28 12:00:46] 2026-04-28 09:59:17,978 | WARNING  | process 3069349 can no longer be monitored (due to stat problems) - aborting
[2026-04-28 12:00:46] 2026-04-28 09:59:17,978 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,979 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,979 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-28 12:00:46] 2026-04-28 09:59:17,979 | WARNING  | maxPSS not found in memory monitor output
[2026-04-28 12:00:46] 2026-04-28 09:59:17,979 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 6052665 B
[2026-04-28 12:00:46] 2026-04-28 09:59:17,979 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16576 B
[2026-04-28 12:00:46] 2026-04-28 09:59:17,979 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/2
[2026-04-28 12:00:46] 2026-04-28 09:59:17,994 | INFO     | sufficient remaining disk space (17793286144 B)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,995 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,996 | INFO     | size of work directory /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053: 6340703 B (within 5033164800 B limit)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,996 | INFO     | pfn file=/var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/HITS.49820375._002509.pool.root.1 does not exist (skip from workdir size calculation)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,996 | INFO     | total size of present files: 0 B (workdir size: 6340703 B)
[2026-04-28 12:00:46] 2026-04-28 09:59:17,996 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/HITS.49820375._002509.pool.root.1 since it does not exist
[2026-04-28 12:00:46] 2026-04-28 09:59:18,296 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 12:00:46] 2026-04-28 09:59:18,346 | INFO     | job 7101146053 has state=finished
[2026-04-28 12:00:46] 2026-04-28 09:59:18,346 | INFO     | preparing for final server update for job 7101146053 in state='finished'
[2026-04-28 12:00:46] 2026-04-28 09:59:18,346 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/jobReport.json
[2026-04-28 12:00:46] 2026-04-28 09:59:18,349 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/2/workernode_map.json
[2026-04-28 12:00:46] 2026-04-28 09:59:18,349 | INFO     | this job has now completed (state=finished)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,349 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,349 | INFO     | log transfer has been attempted: DONE
[2026-04-28 12:00:46] 2026-04-28 09:59:18,349 | INFO     | job 7101146053 has finished - writing final server update
[2026-04-28 12:00:46] 2026-04-28 09:59:18,350 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2581689/.job.ad'
[2026-04-28 12:00:46] 2026-04-28 09:59:18,350 | INFO     | total number of processed events: 400 (read)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,371 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7101146053/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,371 | INFO     | extracted standard info from prmon json
[2026-04-28 12:00:46] 2026-04-28 09:59:18,371 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 12:00:46] 2026-04-28 09:59:18,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 12:00:46] 2026-04-28 09:59:18,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | fitting pss+swap vs Time
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | sum of square deviations: 19832930.0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | sum of deviations: 264259137.0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | mean x (centered): 0.0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | mean y: 2751942.9
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | intersect: 2751942.9
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | chi2: 0.00033878718010711976
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | current memory leak: 13.32 B/s (using 40 data points, chi2=0.00)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | could have reported an average CPU frequency of 3638 MHz (5 samples)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | ..............................
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | . Timing measurements:
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | . get job = 0 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | . initial setup = 4 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | . payload setup = 6 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,373 | INFO     | . stage-in = 0 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,374 | INFO     | . payload execution = 2842 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,374 | INFO     | . stage-out = 0 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,374 | INFO     | . log creation = 0 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,374 | INFO     | ..............................
[2026-04-28 12:00:46] 2026-04-28 09:59:18,375 | INFO     | number of running child processes to parent process 3069349: 1
[2026-04-28 12:00:46] 2026-04-28 09:59:18,375 | INFO     | maximum number of monitored processes: 6
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | 
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | job summary report
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | --------------------------------------------------
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | PanDA job id: 7101146053
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | task id: 49820375
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | errors: (none)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | pilot state: finished 
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | transexitcode: 0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | exeerrorcode: 0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | exeerrordiag: 
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | exitcode: 0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | exitmsg: OK
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | cpuconsumptiontime: 30308 s
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | nevents: 400
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | neventsw: 0
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | pid: 3069349
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | pgrp: 3069349
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | corecount: 12
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | event service: False
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | sizes: {0: 2282522, 11: 2282522, 2852: 2307898, 2854: 2316918, 2855: 2317228}
[2026-04-28 12:00:46] 2026-04-28 09:59:18,424 | INFO     | --------------------------------------------------
[2026-04-28 12:00:46] 2026-04-28 09:59:18,425 | INFO     | 
[2026-04-28 12:00:46] 2026-04-28 09:59:18,425 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/2
[2026-04-28 12:00:46] 2026-04-28 09:59:18,441 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | job 7101146053 has completed (purged errors)
[2026-04-28 12:00:46] 2026-04-28 09:59:18,442 | INFO     | overall cleanup function is called
[2026-04-28 12:00:46] 2026-04-28 09:59:19,449 | INFO     | --- collectZombieJob: --- 10, [3069349]
[2026-04-28 12:00:46] 2026-04-28 09:59:19,450 | INFO     | zombie collector waiting for pid 3069349
[2026-04-28 12:00:46] 2026-04-28 09:59:19,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 12:00:46] 2026-04-28 09:59:19,450 | INFO     | collected zombie processes
[2026-04-28 12:00:46] 2026-04-28 09:59:19,450 | INFO     | will attempt to kill all subprocesses of pid=3069349
[2026-04-28 12:00:46] 2026-04-28 09:59:19,738 | INFO     | process IDs to be killed: [3069349] (in reverse order)
[2026-04-28 12:00:46] 2026-04-28 09:59:19,888 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 12:00:46] 2026-04-28 09:59:19,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 12:00:46] 2026-04-28 09:59:19,911 | INFO     | did not find any defunct processes belonging to 3069349
[2026-04-28 12:00:46] 2026-04-28 09:59:19,933 | INFO     | did not find any defunct processes belonging to 3069349
[2026-04-28 12:00:46] 2026-04-28 09:59:19,934 | INFO     | Ready for new job
[2026-04-28 12:00:46] 2026-04-28 09:59:19,935 | INFO     | ***************************************
[2026-04-28 12:00:46] 2026-04-28 09:59:19,935 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 12:00:46] 2026-04-28 09:59:19,935 | INFO     | ***************************************
[2026-04-28 12:00:46] 2026-04-28 09:59:19,935 | INFO     | 
[2026-04-28 12:00:46] 2026-04-28 09:59:19,940 | INFO     | architecture information:
[2026-04-28 12:00:46] 2026-04-28 09:59:19,940 | INFO     | executing command: cat /etc/os-release
[2026-04-28 12:00:46] 2026-04-28 09:59:19,953 | INFO     | cat /etc/os-release:
[2026-04-28 12:00:46] NAME="CentOS Linux"
[2026-04-28 12:00:46] VERSION="7 (Core)"
[2026-04-28 12:00:46] ID="centos"
[2026-04-28 12:00:46] ID_LIKE="rhel fedora"
[2026-04-28 12:00:46] VERSION_ID="7"
[2026-04-28 12:00:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 12:00:46] ANSI_COLOR="0;31"
[2026-04-28 12:00:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 12:00:46] HOME_URL="https://www.centos.org/"
[2026-04-28 12:00:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 12:00:46] 
[2026-04-28 12:00:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 12:00:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 12:00:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 12:00:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 12:00:46] 
[2026-04-28 12:00:46] 2026-04-28 09:59:19,953 | INFO     | ***************************************
[2026-04-28 12:00:46] 2026-04-28 09:59:20,455 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/2
[2026-04-28 12:00:46] 2026-04-28 09:59:20,469 | INFO     | sufficient remaining disk space (17789091840 B)
[2026-04-28 12:00:46] 2026-04-28 09:59:20,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 12:00:46] 2026-04-28 09:59:20,473 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 12:00:46] 2026-04-28 09:59:20,473 | INFO     | update_server=False
[2026-04-28 12:00:46] 2026-04-28 09:59:20,473 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 12:00:46] 2026-04-28 09:59:20,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 12:00:46] 2026-04-28 09:59:20,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 12:00:46] 2026-04-28 09:59:20,834 | INFO     | all payload control threads have been joined
[2026-04-28 12:00:46] 2026-04-28 09:59:20,878 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-28 12:00:46] 2026-04-28 09:59:20,878 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-28 12:00:46] 2026-04-28 09:59:20,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 12:00:46] 2026-04-28 09:59:20,878 | INFO     | will abort loop
[2026-04-28 12:00:46] 2026-04-28 09:59:21,320 | INFO     | all data control threads have been joined
[2026-04-28 12:00:46] 2026-04-28 09:59:21,479 | INFO     | [job] retrieve thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:21,514 | INFO     | job.realtimelogging is not enabled
[2026-04-28 12:00:46] 2026-04-28 09:59:21,638 | INFO     | [job] validate thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:21,721 | INFO     | all job control threads have been joined
[2026-04-28 12:00:46] 2026-04-28 09:59:21,765 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:21,839 | INFO     | [payload] control thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:21,883 | INFO     | [job] job monitor thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:21,975 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,108 | INFO     | [data] copytool_in thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,268 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,275 | INFO     | [payload] failed_post thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,325 | INFO     | [data] control thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,478 | INFO     | [data] copytool_out thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,725 | INFO     | [job] control thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:22,817 | INFO     | [payload] validate_post thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:23,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 12:00:46] 2026-04-28 09:59:24,438 | INFO     | [job] queue monitor thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:24,480 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 12:00:46] 2026-04-28 09:59:36,183 | INFO     | [monitor] cgroup control has ended
[2026-04-28 12:00:46] 2026-04-28 09:59:37,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22940769388352)>', '<ExcThread(monitor, started 22940535244544)>']
[2026-04-28 12:00:46] 2026-04-28 09:59:42,444 | INFO     | all workflow threads have been joined
[2026-04-28 12:00:46] 2026-04-28 09:59:42,444 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 12:00:46] 2026-04-28 09:59:42,444 | INFO     | traces error code: 0
[2026-04-28 12:00:46] 2026-04-28 09:59:42,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 12:00:46] 2026-04-28 09:59:51,691 | INFO     | PID=3060682 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 12:00:46] 2026-04-28 09:59:51,692 | INFO     | .. there are 13 such processes running
[2026-04-28 12:00:46] 2026-04-28 09:59:51,693 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 12:00:46] 2026-04-28 09:59:51,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 12:00:46] 2026-04-28 09:59:51,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 12:00:46] 2026-04-28 09:59:51,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 12:00:46] 2026-04-28 09:59:51,693 | CRITICAL | thread 'MainThread' is not alive
[2026-04-28 12:00:46] 2026-04-28 09:59:51,693 | INFO     | [monitor] control thread has ended
[2026-04-28 12:00:46] 2026-04-28 09:59:51,803 [wrapper] ==== pilot stdout END ====
[2026-04-28 12:00:46] 2026-04-28 09:59:51,806 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 12:00:46] 2026-04-28 09:59:51,808 [wrapper] pilotpid: 3060682
[2026-04-28 12:00:46] 2026-04-28 09:59:51,810 [wrapper] Pilot exit status: 0
[2026-04-28 12:00:46] 2026-04-28 09:59:51,819 [wrapper] pandaids: 7101146053
[2026-04-28 12:00:46] 2026-04-28 09:59:51,922 [wrapper] cleanup supervisor_pilot 3325414 3060683
[2026-04-28 12:00:46] 2026-04-28 09:59:51,924 [wrapper] Test setup, not cleaning
[2026-04-28 12:00:46] 2026-04-28 09:59:51,927 [wrapper] apfmon messages muted
[2026-04-28 12:00:46] 2026-04-28 09:59:51,929 [wrapper] ==== wrapper stdout END ====
[2026-04-28 12:00:46] 2026-04-28 09:59:51,931 [wrapper] ==== wrapper stderr END ====
[2026-04-28 12:00:46]  *** Error codes and diagnostics ***
[2026-04-28 12:00:46]     "exeErrorCode": 0,
[2026-04-28 12:00:46]     "pilotErrorCode": 0,
[2026-04-28 12:00:46]  *** Listing of results directory ***
[2026-04-28 12:00:46] total 2482120
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc       5631 Apr 26 08:04 queuedata.json
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc     683926 Apr 26 08:04 pilot3.tar.gz
[2026-04-28 12:00:46] -rwx------. 1 boinc boinc      36322 Apr 26 08:05 runpilot2-wrapper.sh
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc        100 Apr 28 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 12:00:46] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 11:11 run_atlas
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc        105 Apr 28 11:11 job.xml
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc       6628 Apr 28 11:11 init_data.xml
[2026-04-28 12:00:46] -rw-r--r--. 2 boinc boinc 2260916816 Apr 28 11:11 EVNT.49820373._000013.pool.root.1
[2026-04-28 12:00:46] -rw-r--r--. 2 boinc boinc      15667 Apr 28 11:11 start_atlas.sh
[2026-04-28 12:00:46] drwxrwx--x. 2 boinc boinc       4096 Apr 28 11:11 shared
[2026-04-28 12:00:46] -rw-r--r--. 2 boinc boinc     697414 Apr 28 11:11 input.tar.gz
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc          0 Apr 28 11:11 boinc_lockfile
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc       2584 Apr 28 11:11 pandaJob.out
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc     992913 Apr 28 11:11 agis_schedconf.cvmfs.json
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc    1512704 Apr 28 11:11 agis_ddmendpoints.agis.ALL.json
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc        444 Apr 28 11:11 workernode_map.json
[2026-04-28 12:00:46] drwx------. 5 boinc boinc       4096 Apr 28 11:11 pilot3
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc        489 Apr 28 11:58 boinc_task_state.xml
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc  275207906 Apr 28 11:58 HITS.49820375._002509.pool.root.1
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc       1033 Apr 28 11:59 memory_monitor_summary.json
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc     401652 Apr 28 11:59 log.49820375._002509.job.log.tgz.1
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc       6377 Apr 28 11:59 heartbeat_new.json
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc       6268 Apr 28 11:59 heartbeat.json
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc        893 Apr 28 11:59 pilotlog.txt
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc         95 Apr 28 11:59 pilot_heartbeat.json
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc     312846 Apr 28 11:59 log.49820375._002509.job.log.1
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc        357 Apr 28 11:59 output.list
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc        410 Apr 28 11:59 runtime_log
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc     737280 Apr 28 11:59 result.tar.gz
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc       8829 Apr 28 11:59 runtime_log.err
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc        662 Apr 28 11:59 ab157b26ebae.diag
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc         27 Apr 28 12:00 wrapper_checkpoint.txt
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc       8192 Apr 28 12:00 boinc_mmap_file
[2026-04-28 12:00:46] -rw-r--r--. 1 boinc boinc      22364 Apr 28 12:00 stderr.txt
[2026-04-28 12:00:46] HITS file was successfully produced:
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc 275207906 Apr 28 11:58 shared/HITS.pool.root.1
[2026-04-28 12:00:46]  *** Contents of shared directory: ***
[2026-04-28 12:00:46] total 2478116
[2026-04-28 12:00:46] -rw-r--r--. 2 boinc boinc 2260916816 Apr 28 11:11 ATLAS.root_0
[2026-04-28 12:00:46] -rw-r--r--. 2 boinc boinc      15667 Apr 28 11:11 start_atlas.sh
[2026-04-28 12:00:46] -rw-r--r--. 2 boinc boinc     697414 Apr 28 11:11 input.tar.gz
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc  275207906 Apr 28 11:58 HITS.pool.root.1
[2026-04-28 12:00:46] -rw-------. 1 boinc boinc     737280 Apr 28 11:59 result.tar.gz
12:00:48 (3056096): run_atlas exited; CPU time 30397.701281
12:00:48 (3056096): called boinc_finish(0)

</stderr_txt>
]]>

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