Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:20:25 (11019): wrapper (7.7.26015): starting
04:20:25 (11019): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 04:20:25] Arguments: --nthreads 8
[2026-04-28 04:20:25] Threads: 8
[2026-04-28 04:20:25] Checking for CVMFS
[2026-04-28 04:20:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 04:20:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 04:20:32] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 04:20:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 04:20:33] 2.11.2.0 15723 17836 98700 158950 0 53 17309291 25165825 96 130560 0 4923333 99.890 4992868 11635 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 04:20:33] CVMFS is ok
[2026-04-28 04:20:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 04:20:33] Checking for apptainer binary...
[2026-04-28 04:20:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 04:20:33] Running /usr/bin/apptainer --version
[2026-04-28 04:20:33] apptainer version 1.3.2-1.el7
[2026-04-28 04:20:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 04:20:49] cg-vwn428.simple-grid.lan
[2026-04-28 04:20:49] apptainer works
[2026-04-28 04:20:50] Set ATHENA_PROC_NUMBER=8
[2026-04-28 04:20:50] Set ATHENA_CORE_NUMBER=8
[2026-04-28 04:20:50] Starting ATLAS job with PandaID=7116253918
[2026-04-28 04:20:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 11:39:47]  *** The last 200 lines of the pilot log: ***
[2026-04-28 11:39:47] 2026-04-28 09:39:04,494 | INFO     | this job has now completed (state=finished)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,494 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,495 | INFO     | log transfer has been attempted: DONE
[2026-04-28 11:39:47] 2026-04-28 09:39:04,495 | INFO     | job 7116253918 has finished - writing final server update
[2026-04-28 11:39:47] 2026-04-28 09:39:04,495 | INFO     | total number of processed events: 400 (read)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,497 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7116253918/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,498 | INFO     | extracted standard info from prmon json
[2026-04-28 11:39:47] 2026-04-28 09:39:04,498 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 11:39:47] 2026-04-28 09:39:04,499 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 11:39:47] 2026-04-28 09:39:04,499 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 11:39:47] 2026-04-28 09:39:04,512 | INFO     | fitting pss+swap vs Time
[2026-04-28 11:39:47] 2026-04-28 09:39:04,513 | INFO     | sum of square deviations: 22809618370.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,519 | INFO     | sum of deviations: 203718460716.99994
[2026-04-28 11:39:47] 2026-04-28 09:39:04,519 | INFO     | mean x (centered): 0.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,519 | INFO     | mean y: 2516336.2410501195
[2026-04-28 11:39:47] 2026-04-28 09:39:04,520 | INFO     | intersect: 2516336.2410501195
[2026-04-28 11:39:47] 2026-04-28 09:39:04,520 | INFO     | chi2: 9.373405603128466
[2026-04-28 11:39:47] 2026-04-28 09:39:04,521 | INFO     | sum of square deviations: 22002747427.5
[2026-04-28 11:39:47] 2026-04-28 09:39:04,527 | INFO     | sum of deviations: 229454984564.00015
[2026-04-28 11:39:47] 2026-04-28 09:39:04,527 | INFO     | mean x (centered): 0.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,528 | INFO     | mean y: 2521148.5700483094
[2026-04-28 11:39:47] 2026-04-28 09:39:04,528 | INFO     | intersect: 2521148.5700483094
[2026-04-28 11:39:47] 2026-04-28 09:39:04,529 | INFO     | chi2: 8.656793229296062
[2026-04-28 11:39:47] 2026-04-28 09:39:04,529 | INFO     | current chi2=8.656793229296062 (change=7.645165526532087 %)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,529 | INFO     | right removable region: 413
[2026-04-28 11:39:47] 2026-04-28 09:39:04,530 | INFO     | sum of square deviations: 22002747427.5
[2026-04-28 11:39:47] 2026-04-28 09:39:04,535 | INFO     | sum of deviations: 48189255007.00004
[2026-04-28 11:39:47] 2026-04-28 09:39:04,536 | INFO     | mean x (centered): 0.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,536 | INFO     | mean y: 2545724.2415458937
[2026-04-28 11:39:47] 2026-04-28 09:39:04,536 | INFO     | intersect: 2545724.2415458937
[2026-04-28 11:39:47] 2026-04-28 09:39:04,537 | INFO     | chi2: 4.203214190406327
[2026-04-28 11:39:47] 2026-04-28 09:39:04,537 | INFO     | current chi2=4.203214190406327 (change=55.15808908340142 %)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,538 | INFO     | sum of square deviations: 21215132660.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,543 | INFO     | sum of deviations: -71674814926.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,544 | INFO     | mean x (centered): 0.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,544 | INFO     | mean y: 2568917.4303178485
[2026-04-28 11:39:47] 2026-04-28 09:39:04,544 | INFO     | intersect: 2568917.4303178485
[2026-04-28 11:39:47] 2026-04-28 09:39:04,545 | INFO     | chi2: 1.2718400868923965
[2026-04-28 11:39:47] 2026-04-28 09:39:04,545 | INFO     | current chi2=1.2718400868923965 (change=69.74124968945617 %)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,546 | INFO     | sum of square deviations: 20446541505.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,551 | INFO     | sum of deviations: -100377864482.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,552 | INFO     | mean x (centered): 0.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,552 | INFO     | mean y: 2574585.574257426
[2026-04-28 11:39:47] 2026-04-28 09:39:04,552 | INFO     | intersect: 2574585.574257426
[2026-04-28 11:39:47] 2026-04-28 09:39:04,553 | INFO     | chi2: 1.0000177872355727
[2026-04-28 11:39:47] 2026-04-28 09:39:04,553 | INFO     | current chi2=1.0000177872355727 (change=21.372364533735695 %)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,553 | INFO     | left removable region: 15
[2026-04-28 11:39:47] 2026-04-28 09:39:04,554 | INFO     | sum of square deviations: 19549015839.5
[2026-04-28 11:39:47] 2026-04-28 09:39:04,559 | INFO     | sum of deviations: -71831336412.00006
[2026-04-28 11:39:47] 2026-04-28 09:39:04,559 | INFO     | mean x (centered): 0.0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,559 | INFO     | mean y: 2580336.165829146
[2026-04-28 11:39:47] 2026-04-28 09:39:04,560 | INFO     | intersect: 2580336.165829146
[2026-04-28 11:39:47] 2026-04-28 09:39:04,561 | INFO     | chi2: 0.21951512387038496
[2026-04-28 11:39:47] 2026-04-28 09:39:04,561 | INFO     | current memory leak: -3.67 B/s (using 398 data points, chi2=0.22)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | could have reported an average CPU frequency of 1999 MHz (18 samples)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | ..............................
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | . Timing measurements:
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | . get job = 0 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | . initial setup = 122 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | . payload setup = 232 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,562 | INFO     | . stage-in = 0 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,563 | INFO     | . payload execution = 25673 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,563 | INFO     | . stage-out = 4 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,563 | INFO     | . log creation = 1 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,563 | INFO     | ..............................
[2026-04-28 11:39:47] 2026-04-28 09:39:04,862 | INFO     | 
[2026-04-28 11:39:47] 2026-04-28 09:39:04,862 | INFO     | job summary report
[2026-04-28 11:39:47] 2026-04-28 09:39:04,862 | INFO     | --------------------------------------------------
[2026-04-28 11:39:47] 2026-04-28 09:39:04,862 | INFO     | PanDA job id: 7116253918
[2026-04-28 11:39:47] 2026-04-28 09:39:04,862 | INFO     | task id: 49820244
[2026-04-28 11:39:47] 2026-04-28 09:39:04,862 | INFO     | errors: (none)
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | pilot state: finished 
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | transexitcode: 0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | exeerrorcode: 0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | exeerrordiag: 
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | exitcode: 0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | exitmsg: OK
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | cpuconsumptiontime: 105178 s
[2026-04-28 11:39:47] 2026-04-28 09:39:04,863 | INFO     | nevents: 400
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | neventsw: 0
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | pid: 19466
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | pgrp: 19466
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | corecount: 8
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | event service: False
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | sizes: {0: 2279969, 1: 2280881, 2: 2282483, 12: 2282483, 25909: 2318573, 25914: 2327571, 25916: 2327755, 25920: 2327949}
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | --------------------------------------------------
[2026-04-28 11:39:47] 2026-04-28 09:39:04,864 | INFO     | 
[2026-04-28 11:39:47] 2026-04-28 09:39:04,865 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-28 11:39:47] 2026-04-28 09:39:05,247 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,249 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 11:39:47] 2026-04-28 09:39:05,250 | INFO     | job 7116253918 has completed (purged errors)
[2026-04-28 11:39:47] 2026-04-28 09:39:05,250 | INFO     | overall cleanup function is called
[2026-04-28 11:39:47] 2026-04-28 09:39:06,260 | INFO     | --- collectZombieJob: --- 10, [19466]
[2026-04-28 11:39:47] 2026-04-28 09:39:06,260 | INFO     | zombie collector waiting for pid 19466
[2026-04-28 11:39:47] 2026-04-28 09:39:06,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 11:39:47] 2026-04-28 09:39:06,260 | INFO     | collected zombie processes
[2026-04-28 11:39:47] 2026-04-28 09:39:06,260 | INFO     | will attempt to kill all subprocesses of pid=19466
[2026-04-28 11:39:47] 2026-04-28 09:39:06,331 | INFO     | process IDs to be killed: [19466] (in reverse order)
[2026-04-28 11:39:47] 2026-04-28 09:39:07,264 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 11:39:47] 2026-04-28 09:39:07,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 11:39:47] 2026-04-28 09:39:07,267 | INFO     | did not find any defunct processes belonging to 19466
[2026-04-28 11:39:47] 2026-04-28 09:39:07,268 | INFO     | did not find any defunct processes belonging to 19466
[2026-04-28 11:39:47] 2026-04-28 09:39:07,269 | INFO     | Ready for new job
[2026-04-28 11:39:47] 2026-04-28 09:39:07,271 | INFO     | ***************************************
[2026-04-28 11:39:47] 2026-04-28 09:39:07,271 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 11:39:47] 2026-04-28 09:39:07,271 | INFO     | ***************************************
[2026-04-28 11:39:47] 2026-04-28 09:39:07,271 | INFO     | 
[2026-04-28 11:39:47] 2026-04-28 09:39:07,272 | INFO     | pilot is running in a VM
[2026-04-28 11:39:47] 2026-04-28 09:39:07,272 | INFO     | architecture information:
[2026-04-28 11:39:47] 2026-04-28 09:39:07,275 | INFO     | executing command: cat /etc/os-release
[2026-04-28 11:39:47] 2026-04-28 09:39:07,547 | INFO     | cat /etc/os-release:
[2026-04-28 11:39:47] NAME="CentOS Linux"
[2026-04-28 11:39:47] VERSION="7 (Core)"
[2026-04-28 11:39:47] ID="centos"
[2026-04-28 11:39:47] ID_LIKE="rhel fedora"
[2026-04-28 11:39:47] VERSION_ID="7"
[2026-04-28 11:39:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 11:39:47] ANSI_COLOR="0;31"
[2026-04-28 11:39:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 11:39:47] HOME_URL="https://www.centos.org/"
[2026-04-28 11:39:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 11:39:47] 
[2026-04-28 11:39:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 11:39:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 11:39:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 11:39:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 11:39:47] 
[2026-04-28 11:39:47] 2026-04-28 09:39:07,547 | INFO     | ***************************************
[2026-04-28 11:39:47] 2026-04-28 09:39:08,051 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-28 11:39:47] 2026-04-28 09:39:08,336 | INFO     | sufficient remaining disk space (491331256320 B)
[2026-04-28 11:39:47] 2026-04-28 09:39:08,337 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 11:39:47] 2026-04-28 09:39:08,337 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 11:39:47] 2026-04-28 09:39:08,337 | INFO     | update_server=False
[2026-04-28 11:39:47] 2026-04-28 09:39:08,337 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 11:39:47] 2026-04-28 09:39:08,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 11:39:47] 2026-04-28 09:39:08,338 | INFO     | aborting loop
[2026-04-28 11:39:47] 2026-04-28 09:39:08,542 | INFO     | all job control threads have been joined
[2026-04-28 11:39:47] 2026-04-28 09:39:08,618 | INFO     | all data control threads have been joined
[2026-04-28 11:39:47] 2026-04-28 09:39:09,048 | INFO     | all payload control threads have been joined
[2026-04-28 11:39:47] 2026-04-28 09:39:09,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 11:39:47] 2026-04-28 09:39:09,343 | INFO     | [job] retrieve thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,344 | INFO     | [job] job monitor thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,548 | INFO     | [job] control thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,600 | INFO     | [payload] validate_post thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,624 | INFO     | [data] control thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,645 | INFO     | [job] validate thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:09,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 11:39:47] 2026-04-28 09:39:10,054 | INFO     | [payload] control thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:10,112 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:10,139 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:10,184 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:10,530 | INFO     | [payload] failed_post thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:10,714 | INFO     | [data] copytool_in thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:10,763 | INFO     | [job] queue monitor thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:11,235 | INFO     | [data] copytool_out thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:11,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 11:39:47] 2026-04-28 09:39:15,596 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 11:39:47] 2026-04-28 09:39:35,934 | INFO     | [monitor] cgroup control has ended
[2026-04-28 11:39:47] 2026-04-28 09:39:37,294 | INFO     | PID=14990 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-28 11:39:47] 2026-04-28 09:39:37,294 | INFO     | .. there are 2 such processes running
[2026-04-28 11:39:47] 2026-04-28 09:39:37,295 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 11:39:47] 2026-04-28 09:39:37,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 11:39:47] 2026-04-28 09:39:37,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 11:39:47] 2026-04-28 09:39:37,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616378459968)>', '<ExcThread(monitor, started 140615794804480)>']
[2026-04-28 11:39:47] 2026-04-28 09:39:38,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 11:39:47] 2026-04-28 09:39:38,301 | INFO     | [monitor] control thread has ended
[2026-04-28 11:39:47] 2026-04-28 09:39:42,353 | INFO     | all workflow threads have been joined
[2026-04-28 11:39:47] 2026-04-28 09:39:42,353 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 11:39:47] 2026-04-28 09:39:42,353 | INFO     | traces error code: 0
[2026-04-28 11:39:47] 2026-04-28 09:39:42,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 11:39:47] 2026-04-28 09:39:42,899 [wrapper] ==== pilot stdout END ====
[2026-04-28 11:39:47] 2026-04-28 09:39:43,013 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 11:39:47] 2026-04-28 09:39:43,160 [wrapper] pilotpid: 14990
[2026-04-28 11:39:47] 2026-04-28 09:39:43,277 [wrapper] Pilot exit status: 0
[2026-04-28 11:39:47] 2026-04-28 09:39:43,755 [wrapper] pandaids: 7116253918
[2026-04-28 11:39:47] 2026-04-28 09:39:44,838 [wrapper] cleanup supervisor_pilot  7130 14991
[2026-04-28 11:39:47] 2026-04-28 09:39:44,911 [wrapper] Test setup, not cleaning
[2026-04-28 11:39:47] 2026-04-28 09:39:44,995 [wrapper] apfmon messages muted
[2026-04-28 11:39:47] 2026-04-28 09:39:45,085 [wrapper] ==== wrapper stdout END ====
[2026-04-28 11:39:47] 2026-04-28 09:39:45,176 [wrapper] ==== wrapper stderr END ====
[2026-04-28 11:39:47]  *** Error codes and diagnostics ***
[2026-04-28 11:39:47]     "exeErrorCode": 0,
[2026-04-28 11:39:47]     "pilotErrorCode": 0,
[2026-04-28 11:39:47]  *** Listing of results directory ***
[2026-04-28 11:39:47] total 2458556
[2026-04-28 11:39:47] -rwx------. 1 boinc boinc      36322 Apr 27 11:32 runpilot2-wrapper.sh
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc       5631 Apr 27 12:57 queuedata.json
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc     683926 Apr 27 12:57 pilot3.tar.gz
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc        100 Apr 28 04:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 11:39:47] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 04:20 run_atlas
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc        105 Apr 28 04:20 job.xml
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc       6306 Apr 28 04:20 init_data.xml
[2026-04-28 11:39:47] -rw-r--r--. 2 boinc boinc 2229771246 Apr 28 04:20 EVNT.49820242._000052.pool.root.1
[2026-04-28 11:39:47] -rw-r--r--. 2 boinc boinc      15667 Apr 28 04:20 start_atlas.sh
[2026-04-28 11:39:47] drwxrwx--x. 2 boinc boinc         68 Apr 28 04:20 shared
[2026-04-28 11:39:47] -rw-r--r--. 2 boinc boinc     697415 Apr 28 04:20 input.tar.gz
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc          0 Apr 28 04:20 boinc_lockfile
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc       2549 Apr 28 04:20 pandaJob.out
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc        415 Apr 28 04:26 workernode_map.json
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc     997414 Apr 28 04:26 agis_schedconf.cvmfs.json
[2026-04-28 11:39:47] drwx------. 5 boinc boinc       4096 Apr 28 04:26 pilot3
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc  277579527 Apr 28 11:37 HITS.49820244._021698.pool.root.1
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc        491 Apr 28 11:37 boinc_task_state.xml
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc       1022 Apr 28 11:38 memory_monitor_summary.json
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc         95 Apr 28 11:38 pilot_heartbeat.json
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc    1512704 Apr 28 11:38 agis_ddmendpoints.agis.ALL.json
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc     665560 Apr 28 11:38 log.49820244._021698.job.log.tgz.1
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc       6350 Apr 28 11:39 heartbeat_new.json
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc       6241 Apr 28 11:39 heartbeat.json
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc         29 Apr 28 11:39 wrapper_checkpoint.txt
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc       8192 Apr 28 11:39 boinc_mmap_file
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc       4883 Apr 28 11:39 pilotlog.txt
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc    2373646 Apr 28 11:39 log.49820244._021698.job.log.1
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc        357 Apr 28 11:39 output.list
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc        410 Apr 28 11:39 runtime_log
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc    3061760 Apr 28 11:39 result.tar.gz
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc       8439 Apr 28 11:39 runtime_log.err
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc        657 Apr 28 11:39 2d403e962d28.diag
[2026-04-28 11:39:47] -rw-r--r--. 1 boinc boinc      20589 Apr 28 11:39 stderr.txt
[2026-04-28 11:39:47] HITS file was successfully produced:
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc 277579527 Apr 28 11:37 shared/HITS.pool.root.1
[2026-04-28 11:39:47]  *** Contents of shared directory: ***
[2026-04-28 11:39:47] total 2452280
[2026-04-28 11:39:47] -rw-r--r--. 2 boinc boinc 2229771246 Apr 28 04:20 ATLAS.root_0
[2026-04-28 11:39:47] -rw-r--r--. 2 boinc boinc      15667 Apr 28 04:20 start_atlas.sh
[2026-04-28 11:39:47] -rw-r--r--. 2 boinc boinc     697415 Apr 28 04:20 input.tar.gz
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc  277579527 Apr 28 11:37 HITS.pool.root.1
[2026-04-28 11:39:47] -rw-------. 1 boinc boinc    3061760 Apr 28 11:39 result.tar.gz
11:39:49 (11019): run_atlas exited; CPU time 105449.493297
11:39:49 (11019): called boinc_finish(0)

</stderr_txt>
]]>

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