Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:22:04 (2717352): wrapper (7.7.26015): starting
02:22:04 (2717352): wrapper: running run_atlas (--nthreads 12)
[2026-04-28 02:22:04] Arguments: --nthreads 12
[2026-04-28 02:22:04] Threads: 12
[2026-04-28 02:22:04] Checking for CVMFS
[2026-04-28 02:22:04] No cvmfs_config command found, will try listing directly
[2026-04-28 02:22:04] CVMFS is ok
[2026-04-28 02:22:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-28 02:22:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-28 02:22:04] Further information can be found at the LHC@home message board.
[2026-04-28 02:22:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 02:22:04] Checking for apptainer binary...
[2026-04-28 02:22:04] which: no apptainer in ((null))
[2026-04-28 02:22:04] apptainer is not installed, using version from CVMFS
[2026-04-28 02:22:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 02:22:04] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot192/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-04-28 02:22:04] apptainer works
[2026-04-28 02:22:04] Set ATHENA_PROC_NUMBER=12
[2026-04-28 02:22:04] Set ATHENA_CORE_NUMBER=12
[2026-04-28 02:22:04] Starting ATLAS job with PandaID=7116222314
[2026-04-28 02:22:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot192/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 03:05:27]  *** The last 200 lines of the pilot log: ***
[2026-04-28 03:05:27]  domain=
[2026-04-28 03:05:27]  filesize=349770
[2026-04-28 03:05:27]  filetype=log
[2026-04-28 03:05:27]  guid=7daf626c-5212-4d59-b6b8-a86f602e50c0
[2026-04-28 03:05:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-28 03:05:27]  is_altstaged=None
[2026-04-28 03:05:27]  is_tar=False
[2026-04-28 03:05:27]  lfn=log.49863694._003797.job.log.tgz.1
[2026-04-28 03:05:27]  mtime=0
[2026-04-28 03:05:27]  protocol_id=None
[2026-04-28 03:05:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-28 03:05:27]  replicas=None
[2026-04-28 03:05:27]  scope=mc23_13p6TeV
[2026-04-28 03:05:27]  status=None
[2026-04-28 03:05:27]  status_code=0
[2026-04-28 03:05:27]  storage_token=
[2026-04-28 03:05:27]  surl=/var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116222314/log.49863694._003797.job.log.tgz.1
[2026-04-28 03:05:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/eb/log.49863694._003797.job.log.tgz.1
[2026-04-28 03:05:27]  workdir=None
[2026-04-28 03:05:27] ]
[2026-04-28 03:05:27] 2026-04-28 01:04:20,164 | INFO     | transferring file log.49863694._003797.job.log.tgz.1 from /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116222314/log.49863694._003797.job.log.tgz.1 to /var/lib/
[2026-04-28 03:05:27] 2026-04-28 01:04:20,165 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116222314/log.49863694._003797.job.log.tgz.1 /var/lib/boinc/var/slot192/slots/1/
[2026-04-28 03:05:27] 2026-04-28 01:04:20,182 | INFO     | adding to output.list: log.49863694._003797.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6d/eb/log.49863694._003797.job.log.tg
[2026-04-28 03:05:27] 2026-04-28 01:04:20,182 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-28 03:05:27] 2026-04-28 01:04:20,182 | INFO     | summary of transferred files:
[2026-04-28 03:05:27] 2026-04-28 01:04:20,183 | INFO     |  -- lfn=log.49863694._003797.job.log.tgz.1, status_code=0, status=transferred
[2026-04-28 03:05:27] 2026-04-28 01:04:20,183 | INFO     | stage-out finished correctly
[2026-04-28 03:05:27] 2026-04-28 01:04:21,491 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-28 03:05:27] 2026-04-28 01:04:21,616 | INFO     | monitor loop #192: job 0:7116222314 is in state 'finished'
[2026-04-28 03:05:27] 2026-04-28 01:04:21,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,209 | INFO     | job 7116222314 has state=finished
[2026-04-28 03:05:27] 2026-04-28 01:04:23,209 | INFO     | preparing for final server update for job 7116222314 in state='finished'
[2026-04-28 03:05:27] 2026-04-28 01:04:23,676 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,676 | INFO     | reading metadata from: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116222314/jobReport.json
[2026-04-28 03:05:27] 2026-04-28 01:04:23,678 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot192/slots/1/workernode_map.json
[2026-04-28 03:05:27] 2026-04-28 01:04:23,678 | INFO     | this job has now completed (state=finished)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,678 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,678 | INFO     | log transfer has been attempted: DONE
[2026-04-28 03:05:27] 2026-04-28 01:04:23,678 | INFO     | job 7116222314 has finished - writing final server update
[2026-04-28 03:05:27] 2026-04-28 01:04:23,678 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1899547/.job.ad'
[2026-04-28 03:05:27] 2026-04-28 01:04:23,679 | INFO     | total number of processed events: 400 (read)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,696 | INFO     | using path: /var/lib/boinc/var/slot192/slots/1/PanDA_Pilot-7116222314/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,697 | INFO     | extracted standard info from prmon json
[2026-04-28 03:05:27] 2026-04-28 01:04:23,697 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 03:05:27] 2026-04-28 01:04:23,697 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 03:05:27] 2026-04-28 01:04:23,697 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | fitting pss+swap vs Time
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | sum of square deviations: 12176972.5
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | sum of deviations: 60548020.49999999
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | mean x (centered): 0.0
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | mean y: 2761016.911764706
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | intersect: 2761016.911764706
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | chi2: 0.00010698747293804269
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | current memory leak: 4.97 B/s (using 34 data points, chi2=0.00)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | could have reported an average CPU frequency of 3612 MHz (5 samples)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | ..............................
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | . Timing measurements:
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | . get job = 0 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | . initial setup = 4 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,698 | INFO     | . payload setup = 5 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,699 | INFO     | . stage-in = 0 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,699 | INFO     | . payload execution = 2502 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,699 | INFO     | . stage-out = 0 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,699 | INFO     | . log creation = 0 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,699 | INFO     | ..............................
[2026-04-28 03:05:27] 2026-04-28 01:04:23,746 | INFO     | 
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | job summary report
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | --------------------------------------------------
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | PanDA job id: 7116222314
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | task id: 49863694
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | errors: (none)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | pilot state: finished 
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | transexitcode: 0
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | exeerrorcode: 0
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | exeerrordiag: 
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | exitcode: 0
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | exitmsg: OK
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | cpuconsumptiontime: 26486 s
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | nevents: 400
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | neventsw: 0
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | pid: 2728040
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | pgrp: 2728040
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | corecount: 12
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | event service: False
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | sizes: {0: 2282532, 11: 2282532, 2511: 2307741, 2512: 2316763, 2513: 2316819, 2515: 2317045}
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | --------------------------------------------------
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | 
[2026-04-28 03:05:27] 2026-04-28 01:04:23,747 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot192/slots/1
[2026-04-28 03:05:27] 2026-04-28 01:04:23,765 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,765 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,765 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | job 7116222314 has completed (purged errors)
[2026-04-28 03:05:27] 2026-04-28 01:04:23,766 | INFO     | overall cleanup function is called
[2026-04-28 03:05:27] 2026-04-28 01:04:24,773 | INFO     | --- collectZombieJob: --- 10, [2728040]
[2026-04-28 03:05:27] 2026-04-28 01:04:24,773 | INFO     | zombie collector waiting for pid 2728040
[2026-04-28 03:05:27] 2026-04-28 01:04:24,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 03:05:27] 2026-04-28 01:04:24,773 | INFO     | collected zombie processes
[2026-04-28 03:05:27] 2026-04-28 01:04:24,773 | INFO     | will attempt to kill all subprocesses of pid=2728040
[2026-04-28 03:05:27] 2026-04-28 01:04:25,075 | INFO     | process IDs to be killed: [2728040] (in reverse order)
[2026-04-28 03:05:27] 2026-04-28 01:04:25,226 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 03:05:27] 2026-04-28 01:04:25,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 03:05:27] 2026-04-28 01:04:25,250 | INFO     | did not find any defunct processes belonging to 2728040
[2026-04-28 03:05:27] 2026-04-28 01:04:25,272 | INFO     | did not find any defunct processes belonging to 2728040
[2026-04-28 03:05:27] 2026-04-28 01:04:25,272 | INFO     | Ready for new job
[2026-04-28 03:05:27] 2026-04-28 01:04:25,273 | INFO     | ***************************************
[2026-04-28 03:05:27] 2026-04-28 01:04:25,273 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 03:05:27] 2026-04-28 01:04:25,273 | INFO     | ***************************************
[2026-04-28 03:05:27] 2026-04-28 01:04:25,273 | INFO     | 
[2026-04-28 03:05:27] 2026-04-28 01:04:25,279 | INFO     | architecture information:
[2026-04-28 03:05:27] 2026-04-28 01:04:25,279 | INFO     | executing command: cat /etc/os-release
[2026-04-28 03:05:27] 2026-04-28 01:04:25,293 | INFO     | cat /etc/os-release:
[2026-04-28 03:05:27] NAME="CentOS Linux"
[2026-04-28 03:05:27] VERSION="7 (Core)"
[2026-04-28 03:05:27] ID="centos"
[2026-04-28 03:05:27] ID_LIKE="rhel fedora"
[2026-04-28 03:05:27] VERSION_ID="7"
[2026-04-28 03:05:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 03:05:27] ANSI_COLOR="0;31"
[2026-04-28 03:05:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 03:05:27] HOME_URL="https://www.centos.org/"
[2026-04-28 03:05:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 03:05:27] 
[2026-04-28 03:05:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 03:05:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 03:05:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 03:05:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 03:05:27] 
[2026-04-28 03:05:27] 2026-04-28 01:04:25,293 | INFO     | ***************************************
[2026-04-28 03:05:27] 2026-04-28 01:04:25,795 | INFO     | executing command: df -mP /var/lib/boinc/var/slot192/slots/1
[2026-04-28 03:05:27] 2026-04-28 01:04:25,811 | INFO     | sufficient remaining disk space (15810428928 B)
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | INFO     | update_server=False
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | INFO     | aborting loop
[2026-04-28 03:05:27] 2026-04-28 01:04:25,812 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 03:05:27] 2026-04-28 01:04:25,942 | INFO     | all data control threads have been joined
[2026-04-28 03:05:27] 2026-04-28 01:04:25,952 | INFO     | all payload control threads have been joined
[2026-04-28 03:05:27] 2026-04-28 01:04:26,817 | INFO     | [job] retrieve thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:26,817 | INFO     | [job] job monitor thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:26,947 | INFO     | [data] control thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:26,954 | INFO     | [payload] control thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:27,023 | INFO     | all job control threads have been joined
[2026-04-28 03:05:27] 2026-04-28 01:04:27,082 | INFO     | [payload] validate_post thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:27,497 | INFO     | [job] validate thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:27,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 03:05:27] 2026-04-28 01:04:27,691 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:27,817 | INFO     | [data] copytool_out thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:27,855 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:27,982 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:28,029 | INFO     | [job] control thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:28,056 | INFO     | [data] copytool_in thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:28,226 | INFO     | [payload] failed_post thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:28,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 03:05:27] 2026-04-28 01:04:29,760 | INFO     | [job] queue monitor thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:31,552 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:36,824 | INFO     | job.realtimelogging is not enabled
[2026-04-28 03:05:27] 2026-04-28 01:04:37,829 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 03:05:27] 2026-04-28 01:04:55,500 | INFO     | PID=2722239 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 03:05:27] 2026-04-28 01:04:55,501 | INFO     | .. there are 15 such processes running
[2026-04-28 03:05:27] 2026-04-28 01:04:55,501 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 03:05:27] 2026-04-28 01:04:55,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 03:05:27] 2026-04-28 01:04:55,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 03:05:27] 2026-04-28 01:05:20,752 | INFO     | [monitor] cgroup control has ended
[2026-04-28 03:05:27] 2026-04-28 01:05:22,544 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23220903667520)>', '<ExcThread(monitor, started 23220602263296)>']
[2026-04-28 03:05:27] 2026-04-28 01:05:22,630 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 03:05:27] 2026-04-28 01:05:22,631 | INFO     | [monitor] control thread has ended
[2026-04-28 03:05:27] 2026-04-28 01:05:27,569 | INFO     | all workflow threads have been joined
[2026-04-28 03:05:27] 2026-04-28 01:05:27,569 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 03:05:27] 2026-04-28 01:05:27,569 | INFO     | traces error code: 0
[2026-04-28 03:05:27] 2026-04-28 01:05:27,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 03:05:27] 2026-04-28 01:05:27,712 [wrapper] ==== pilot stdout END ====
[2026-04-28 03:05:27] 2026-04-28 01:05:27,715 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 03:05:27] 2026-04-28 01:05:27,717 [wrapper] pilotpid: 2722239
[2026-04-28 03:05:27] 2026-04-28 01:05:27,719 [wrapper] Pilot exit status: 0
[2026-04-28 03:05:27] 2026-04-28 01:05:27,728 [wrapper] pandaids: 7116222314
[2026-04-28 03:05:27] 2026-04-28 01:05:27,836 [wrapper] cleanup supervisor_pilot 2982127 2722240
[2026-04-28 03:05:27] 2026-04-28 01:05:27,839 [wrapper] Test setup, not cleaning
[2026-04-28 03:05:27] 2026-04-28 01:05:27,843 [wrapper] apfmon messages muted
[2026-04-28 03:05:27] 2026-04-28 01:05:27,846 [wrapper] ==== wrapper stdout END ====
[2026-04-28 03:05:27] 2026-04-28 01:05:27,848 [wrapper] ==== wrapper stderr END ====
[2026-04-28 03:05:27]  *** Error codes and diagnostics ***
[2026-04-28 03:05:27]     "exeErrorCode": 0,
[2026-04-28 03:05:27]     "pilotErrorCode": 0,
[2026-04-28 03:05:27]  *** Listing of results directory ***
[2026-04-28 03:05:27] total 473760
[2026-04-28 03:05:27] -rwx------. 1 boinc boinc     36322 Apr 27 04:47 runpilot2-wrapper.sh
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc    683926 Apr 27 04:48 pilot3.tar.gz
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc      5631 Apr 27 04:51 queuedata.json
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc       100 Apr 28 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 03:05:27] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 02:21 run_atlas
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc       105 Apr 28 02:21 job.xml
[2026-04-28 03:05:27] -rw-r--r--. 2 boinc boinc 262961440 Apr 28 02:22 EVNT.49863691._000173.pool.root.1
[2026-04-28 03:05:27] -rw-r--r--. 2 boinc boinc     15667 Apr 28 02:22 start_atlas.sh
[2026-04-28 03:05:27] drwxrwx--x. 2 boinc boinc      4096 Apr 28 02:22 shared
[2026-04-28 03:05:27] -rw-r--r--. 2 boinc boinc    697416 Apr 28 02:22 input.tar.gz
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc      6630 Apr 28 02:22 init_data.xml
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc         0 Apr 28 02:22 boinc_lockfile
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc      2581 Apr 28 02:22 pandaJob.out
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc    997422 Apr 28 02:22 agis_schedconf.cvmfs.json
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc   1512704 Apr 28 02:22 agis_ddmendpoints.agis.ALL.json
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc       445 Apr 28 02:22 workernode_map.json
[2026-04-28 03:05:27] drwx------. 5 boinc boinc      4096 Apr 28 02:22 pilot3
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc 216772302 Apr 28 03:03 HITS.49863694._003797.pool.root.1
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc        95 Apr 28 03:04 pilot_heartbeat.json
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc      1030 Apr 28 03:04 memory_monitor_summary.json
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc    349770 Apr 28 03:04 log.49863694._003797.job.log.tgz.1
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc      6375 Apr 28 03:04 heartbeat_new.json
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc      6266 Apr 28 03:04 heartbeat.json
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc       487 Apr 28 03:04 boinc_task_state.xml
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc        27 Apr 28 03:04 wrapper_checkpoint.txt
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc      8192 Apr 28 03:04 boinc_mmap_file
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc      4905 Apr 28 03:05 pilotlog.txt
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc    281031 Apr 28 03:05 log.49863694._003797.job.log.1
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc       357 Apr 28 03:05 output.list
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc       410 Apr 28 03:05 runtime_log
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc    645120 Apr 28 03:05 result.tar.gz
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc      8846 Apr 28 03:05 runtime_log.err
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc       661 Apr 28 03:05 ce33effce739.diag
[2026-04-28 03:05:27] -rw-r--r--. 1 boinc boinc     20920 Apr 28 03:05 stderr.txt
[2026-04-28 03:05:27] HITS file was successfully produced:
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc 216772302 Apr 28 03:03 shared/HITS.pool.root.1
[2026-04-28 03:05:27]  *** Contents of shared directory: ***
[2026-04-28 03:05:27] total 469832
[2026-04-28 03:05:27] -rw-r--r--. 2 boinc boinc 262961440 Apr 28 02:22 ATLAS.root_0
[2026-04-28 03:05:27] -rw-r--r--. 2 boinc boinc     15667 Apr 28 02:22 start_atlas.sh
[2026-04-28 03:05:27] -rw-r--r--. 2 boinc boinc    697416 Apr 28 02:22 input.tar.gz
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc 216772302 Apr 28 03:03 HITS.pool.root.1
[2026-04-28 03:05:27] -rw-------. 1 boinc boinc    645120 Apr 28 03:05 result.tar.gz
03:05:29 (2717352): run_atlas exited; CPU time 26565.899494
03:05:29 (2717352): called boinc_finish(0)

</stderr_txt>
]]>

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