Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:56:46 (24112): wrapper (7.7.26015): starting
00:56:46 (24112): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 00:56:46] Arguments: --nthreads 8
[2026-04-28 00:56:46] Threads: 8
[2026-04-28 00:56:46] Checking for CVMFS
[2026-04-28 00:56:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 00:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 00:56:50] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 00:56:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 00:56:51] 2.11.2.0 24555 17632 106968 158945 2 54 18323633 25165824 1288 130560 0 39291830 99.953 8265154 8661 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 00:56:51] CVMFS is ok
[2026-04-28 00:56:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 00:56:51] Checking for apptainer binary...
[2026-04-28 00:56:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 00:56:51] Running /usr/bin/apptainer --version
[2026-04-28 00:56:51] apptainer version 1.3.2-1.el7
[2026-04-28 00:56:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 00:57:08] cg-vwn357.simple-grid.lan
[2026-04-28 00:57:08] apptainer works
[2026-04-28 00:57:08] Set ATHENA_PROC_NUMBER=8
[2026-04-28 00:57:08] Set ATHENA_CORE_NUMBER=8
[2026-04-28 00:57:08] Starting ATLAS job with PandaID=7116242796
[2026-04-28 00:57:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 08:18:11]  *** The last 200 lines of the pilot log: ***
[2026-04-28 08:18:11] 2026-04-28 06:17:21,376 | INFO     | total number of processed events: 400 (read)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,378 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-7116242796/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,379 | INFO     | extracted standard info from prmon json
[2026-04-28 08:18:11] 2026-04-28 06:17:21,379 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 08:18:11] 2026-04-28 06:17:21,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 08:18:11] 2026-04-28 06:17:21,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 08:18:11] 2026-04-28 06:17:21,389 | INFO     | fitting pss+swap vs Time
[2026-04-28 08:18:11] 2026-04-28 06:17:21,390 | INFO     | sum of square deviations: 23635978050.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,396 | INFO     | sum of deviations: 246856060198.99997
[2026-04-28 08:18:11] 2026-04-28 06:17:21,397 | INFO     | mean x (centered): 0.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,397 | INFO     | mean y: 2511207.1226415094
[2026-04-28 08:18:11] 2026-04-28 06:17:21,397 | INFO     | intersect: 2511207.1226415094
[2026-04-28 08:18:11] 2026-04-28 06:17:21,398 | INFO     | chi2: 7.67186917292093
[2026-04-28 08:18:11] 2026-04-28 06:17:21,399 | INFO     | sum of square deviations: 22809618370.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,405 | INFO     | sum of deviations: 272450476066.99997
[2026-04-28 08:18:11] 2026-04-28 06:17:21,405 | INFO     | mean x (centered): 0.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,405 | INFO     | mean y: 2515879.54176611
[2026-04-28 08:18:11] 2026-04-28 06:17:21,405 | INFO     | intersect: 2515879.54176611
[2026-04-28 08:18:11] 2026-04-28 06:17:21,406 | INFO     | chi2: 6.935660523900205
[2026-04-28 08:18:11] 2026-04-28 06:17:21,406 | INFO     | current chi2=6.935660523900205 (change=9.596209638444945 %)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,406 | INFO     | right removable region: 418
[2026-04-28 08:18:11] 2026-04-28 06:17:21,407 | INFO     | sum of square deviations: 22809618370.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,414 | INFO     | sum of deviations: 90125169800.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,414 | INFO     | mean x (centered): 0.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,414 | INFO     | mean y: 2540123.7016706443
[2026-04-28 08:18:11] 2026-04-28 06:17:21,414 | INFO     | intersect: 2540123.7016706443
[2026-04-28 08:18:11] 2026-04-28 06:17:21,415 | INFO     | chi2: 2.6796689286521955
[2026-04-28 08:18:11] 2026-04-28 06:17:21,415 | INFO     | current chi2=2.6796689286521955 (change=65.07149863672717 %)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,416 | INFO     | sum of square deviations: 22002747427.5
[2026-04-28 08:18:11] 2026-04-28 06:17:21,422 | INFO     | sum of deviations: 3115833029.999996
[2026-04-28 08:18:11] 2026-04-28 06:17:21,422 | INFO     | mean x (centered): 0.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,422 | INFO     | mean y: 2556522.381642512
[2026-04-28 08:18:11] 2026-04-28 06:17:21,423 | INFO     | intersect: 2556522.381642512
[2026-04-28 08:18:11] 2026-04-28 06:17:21,423 | INFO     | chi2: 0.9387545054438061
[2026-04-28 08:18:11] 2026-04-28 06:17:21,423 | INFO     | current chi2=0.9387545054438061 (change=64.96751910632574 %)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,424 | INFO     | sum of square deviations: 21215132660.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,430 | INFO     | sum of deviations: -21191347540.000004
[2026-04-28 08:18:11] 2026-04-28 06:17:21,430 | INFO     | mean x (centered): 0.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,430 | INFO     | mean y: 2561224.628361858
[2026-04-28 08:18:11] 2026-04-28 06:17:21,430 | INFO     | intersect: 2561224.628361858
[2026-04-28 08:18:11] 2026-04-28 06:17:21,431 | INFO     | chi2: 0.8221986709591159
[2026-04-28 08:18:11] 2026-04-28 06:17:21,431 | INFO     | current chi2=0.8221986709591159 (change=12.416007998767174 %)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,432 | INFO     | left removable region: 15
[2026-04-28 08:18:11] 2026-04-28 06:17:21,432 | INFO     | sum of square deviations: 20295085642.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,438 | INFO     | sum of deviations: 6541548072.999999
[2026-04-28 08:18:11] 2026-04-28 06:17:21,439 | INFO     | mean x (centered): 0.0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,439 | INFO     | mean y: 2566672.3250620347
[2026-04-28 08:18:11] 2026-04-28 06:17:21,439 | INFO     | intersect: 2566672.3250620347
[2026-04-28 08:18:11] 2026-04-28 06:17:21,440 | INFO     | chi2: 0.039280414569128924
[2026-04-28 08:18:11] 2026-04-28 06:17:21,441 | INFO     | current memory leak: 0.32 B/s (using 403 data points, chi2=0.04)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,441 | INFO     | could have reported an average CPU frequency of 1999 MHz (18 samples)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,441 | INFO     | ..............................
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . Timing measurements:
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . get job = 0 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . initial setup = 104 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . payload setup = 159 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . stage-in = 0 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . payload execution = 25931 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . stage-out = 1 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,442 | INFO     | . log creation = 0 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,443 | INFO     | ..............................
[2026-04-28 08:18:11] 2026-04-28 06:17:21,574 | INFO     | 
[2026-04-28 08:18:11] 2026-04-28 06:17:21,574 | INFO     | job summary report
[2026-04-28 08:18:11] 2026-04-28 06:17:21,574 | INFO     | --------------------------------------------------
[2026-04-28 08:18:11] 2026-04-28 06:17:21,574 | INFO     | PanDA job id: 7116242796
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | task id: 49820375
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | errors: (none)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | pilot state: finished 
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | transexitcode: 0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | exeerrorcode: 0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | exeerrordiag: 
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | exitcode: 0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | exitmsg: OK
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | cpuconsumptiontime: 100812 s
[2026-04-28 08:18:11] 2026-04-28 06:17:21,575 | INFO     | nevents: 400
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | neventsw: 0
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | pid: 510
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | pgrp: 510
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | corecount: 8
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | event service: False
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | sizes: {0: 2280662, 1: 2282491, 26095: 2318556, 26098: 2327556, 26099: 2327612, 26100: 2327806}
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | --------------------------------------------------
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | 
[2026-04-28 08:18:11] 2026-04-28 06:17:21,576 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2026-04-28 08:18:11] 2026-04-28 06:17:21,618 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,618 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,620 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,621 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 08:18:11] 2026-04-28 06:17:21,621 | INFO     | job 7116242796 has completed (purged errors)
[2026-04-28 08:18:11] 2026-04-28 06:17:21,621 | INFO     | overall cleanup function is called
[2026-04-28 08:18:11] 2026-04-28 06:17:22,195 | INFO     | PID=28339 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-28 08:18:11] 2026-04-28 06:17:22,195 | INFO     | .. there are 8 such processes running
[2026-04-28 08:18:11] 2026-04-28 06:17:22,630 | INFO     | --- collectZombieJob: --- 10, [510]
[2026-04-28 08:18:11] 2026-04-28 06:17:22,631 | INFO     | zombie collector waiting for pid 510
[2026-04-28 08:18:11] 2026-04-28 06:17:22,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 08:18:11] 2026-04-28 06:17:22,631 | INFO     | collected zombie processes
[2026-04-28 08:18:11] 2026-04-28 06:17:22,631 | INFO     | will attempt to kill all subprocesses of pid=510
[2026-04-28 08:18:11] 2026-04-28 06:17:22,735 | INFO     | process IDs to be killed: [510] (in reverse order)
[2026-04-28 08:18:11] 2026-04-28 06:17:22,798 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 08:18:11] 2026-04-28 06:17:22,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 08:18:11] 2026-04-28 06:17:22,802 | INFO     | did not find any defunct processes belonging to 510
[2026-04-28 08:18:11] 2026-04-28 06:17:22,805 | INFO     | did not find any defunct processes belonging to 510
[2026-04-28 08:18:11] 2026-04-28 06:17:22,806 | INFO     | Ready for new job
[2026-04-28 08:18:11] 2026-04-28 06:17:22,808 | INFO     | ***************************************
[2026-04-28 08:18:11] 2026-04-28 06:17:22,808 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 08:18:11] 2026-04-28 06:17:22,809 | INFO     | ***************************************
[2026-04-28 08:18:11] 2026-04-28 06:17:22,809 | INFO     | 
[2026-04-28 08:18:11] 2026-04-28 06:17:22,809 | INFO     | pilot is running in a VM
[2026-04-28 08:18:11] 2026-04-28 06:17:22,809 | INFO     | architecture information:
[2026-04-28 08:18:11] 2026-04-28 06:17:22,810 | INFO     | executing command: cat /etc/os-release
[2026-04-28 08:18:11] 2026-04-28 06:17:22,827 | INFO     | cat /etc/os-release:
[2026-04-28 08:18:11] NAME="CentOS Linux"
[2026-04-28 08:18:11] VERSION="7 (Core)"
[2026-04-28 08:18:11] ID="centos"
[2026-04-28 08:18:11] ID_LIKE="rhel fedora"
[2026-04-28 08:18:11] VERSION_ID="7"
[2026-04-28 08:18:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 08:18:11] ANSI_COLOR="0;31"
[2026-04-28 08:18:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 08:18:11] HOME_URL="https://www.centos.org/"
[2026-04-28 08:18:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 08:18:11] 
[2026-04-28 08:18:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 08:18:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 08:18:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 08:18:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 08:18:11] 
[2026-04-28 08:18:11] 2026-04-28 06:17:22,828 | INFO     | ***************************************
[2026-04-28 08:18:11] 2026-04-28 06:17:23,330 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2026-04-28 08:18:11] 2026-04-28 06:17:23,359 | INFO     | sufficient remaining disk space (489294921728 B)
[2026-04-28 08:18:11] 2026-04-28 06:17:23,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 08:18:11] 2026-04-28 06:17:23,359 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 08:18:11] 2026-04-28 06:17:23,360 | INFO     | update_server=False
[2026-04-28 08:18:11] 2026-04-28 06:17:23,360 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 08:18:11] 2026-04-28 06:17:23,360 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 08:18:11] 2026-04-28 06:17:23,574 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-28 08:18:11] 2026-04-28 06:17:23,574 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-28 08:18:11] 2026-04-28 06:17:23,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 08:18:11] 2026-04-28 06:17:23,575 | INFO     | will abort loop
[2026-04-28 08:18:11] 2026-04-28 06:17:24,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 08:18:11] 2026-04-28 06:17:24,289 | INFO     | all data control threads have been joined
[2026-04-28 08:18:11] 2026-04-28 06:17:24,364 | INFO     | [job] retrieve thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:24,367 | INFO     | [job] queue monitor thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:24,503 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:24,534 | INFO     | all payload control threads have been joined
[2026-04-28 08:18:11] 2026-04-28 06:17:24,580 | INFO     | [job] job monitor thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:24,811 | INFO     | all job control threads have been joined
[2026-04-28 08:18:11] 2026-04-28 06:17:24,972 | INFO     | [job] validate thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,079 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,080 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,119 | INFO     | [data] copytool_in thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,295 | INFO     | [data] control thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,458 | INFO     | [payload] validate_post thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,540 | INFO     | [payload] control thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,817 | INFO     | [job] control thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,839 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:25,897 | INFO     | [payload] failed_post thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:26,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 08:18:11] 2026-04-28 06:17:26,252 | INFO     | [data] copytool_out thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:30,118 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 08:18:11] 2026-04-28 06:17:54,426 | INFO     | PID=28339 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-28 08:18:11] 2026-04-28 06:17:54,426 | INFO     | .. there are 8 such processes running
[2026-04-28 08:18:11] 2026-04-28 06:17:54,427 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 08:18:11] 2026-04-28 06:17:54,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 08:18:11] 2026-04-28 06:17:54,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 08:18:11] 2026-04-28 06:18:04,693 | INFO     | [monitor] cgroup control has ended
[2026-04-28 08:18:11] 2026-04-28 06:18:04,831 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890993866560)>', '<ExcThread(monitor, started 139890549311232)>']
[2026-04-28 08:18:11] 2026-04-28 06:18:05,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 08:18:11] 2026-04-28 06:18:05,493 | INFO     | [monitor] control thread has ended
[2026-04-28 08:18:11] 2026-04-28 06:18:09,857 | INFO     | all workflow threads have been joined
[2026-04-28 08:18:11] 2026-04-28 06:18:09,858 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 08:18:11] 2026-04-28 06:18:09,858 | INFO     | traces error code: 0
[2026-04-28 08:18:11] 2026-04-28 06:18:09,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 08:18:11] 2026-04-28 06:18:10,009 [wrapper] ==== pilot stdout END ====
[2026-04-28 08:18:11] 2026-04-28 06:18:10,022 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 08:18:11] 2026-04-28 06:18:10,026 [wrapper] pilotpid: 28339
[2026-04-28 08:18:11] 2026-04-28 06:18:10,070 [wrapper] Pilot exit status: 0
[2026-04-28 08:18:11] 2026-04-28 06:18:10,191 [wrapper] pandaids: 7116242796
[2026-04-28 08:18:11] 2026-04-28 06:18:10,369 [wrapper] cleanup supervisor_pilot  1637 28340
[2026-04-28 08:18:11] 2026-04-28 06:18:10,373 [wrapper] Test setup, not cleaning
[2026-04-28 08:18:11] 2026-04-28 06:18:10,400 [wrapper] apfmon messages muted
[2026-04-28 08:18:11] 2026-04-28 06:18:10,416 [wrapper] ==== wrapper stdout END ====
[2026-04-28 08:18:11] 2026-04-28 06:18:10,465 [wrapper] ==== wrapper stderr END ====
[2026-04-28 08:18:11]  *** Error codes and diagnostics ***
[2026-04-28 08:18:11]     "exeErrorCode": 0,
[2026-04-28 08:18:11]     "pilotErrorCode": 0,
[2026-04-28 08:18:11]  *** Listing of results directory ***
[2026-04-28 08:18:11] total 2442136
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc     683926 Apr 27 09:25 pilot3.tar.gz
[2026-04-28 08:18:11] -rwx------. 1 boinc boinc      36322 Apr 27 09:28 runpilot2-wrapper.sh
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc       5631 Apr 27 09:33 queuedata.json
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc        100 Apr 28 00:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 08:18:11] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 00:56 run_atlas
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc        105 Apr 28 00:56 job.xml
[2026-04-28 08:18:11] -rw-r--r--. 2 boinc boinc 2217434726 Apr 28 00:56 EVNT.49820373._000044.pool.root.1
[2026-04-28 08:18:11] -rw-r--r--. 2 boinc boinc      15667 Apr 28 00:56 start_atlas.sh
[2026-04-28 08:18:11] drwxrwx--x. 2 boinc boinc         68 Apr 28 00:56 shared
[2026-04-28 08:18:11] -rw-r--r--. 2 boinc boinc     697424 Apr 28 00:56 input.tar.gz
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc       6307 Apr 28 00:56 init_data.xml
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc          0 Apr 28 00:56 boinc_lockfile
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc       2584 Apr 28 00:57 pandaJob.out
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc        415 Apr 28 01:02 workernode_map.json
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc     997821 Apr 28 01:02 agis_schedconf.cvmfs.json
[2026-04-28 08:18:11] drwx------. 5 boinc boinc       4096 Apr 28 01:02 pilot3
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc  273297774 Apr 28 08:16 HITS.49820375._016006.pool.root.1
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc        490 Apr 28 08:16 boinc_task_state.xml
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc         95 Apr 28 08:17 pilot_heartbeat.json
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc       1021 Apr 28 08:17 memory_monitor_summary.json
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc    1512704 Apr 28 08:17 agis_ddmendpoints.agis.ALL.json
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc     569812 Apr 28 08:17 log.49820375._016006.job.log.tgz.1
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc       6347 Apr 28 08:17 heartbeat_new.json
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc       6238 Apr 28 08:17 heartbeat.json
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc         29 Apr 28 08:17 wrapper_checkpoint.txt
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc       8192 Apr 28 08:17 boinc_mmap_file
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc       5070 Apr 28 08:18 pilotlog.txt
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc    2373283 Apr 28 08:18 log.49820375._016006.job.log.1
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc        357 Apr 28 08:18 output.list
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc        410 Apr 28 08:18 runtime_log
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc    2959360 Apr 28 08:18 result.tar.gz
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc       8455 Apr 28 08:18 runtime_log.err
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc        658 Apr 28 08:18 1023976bd3ff.diag
[2026-04-28 08:18:11] -rw-r--r--. 1 boinc boinc      20711 Apr 28 08:18 stderr.txt
[2026-04-28 08:18:11] HITS file was successfully produced:
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc 273297774 Apr 28 08:16 shared/HITS.pool.root.1
[2026-04-28 08:18:11]  *** Contents of shared directory: ***
[2026-04-28 08:18:11] total 2435952
[2026-04-28 08:18:11] -rw-r--r--. 2 boinc boinc 2217434726 Apr 28 00:56 ATLAS.root_0
[2026-04-28 08:18:11] -rw-r--r--. 2 boinc boinc      15667 Apr 28 00:56 start_atlas.sh
[2026-04-28 08:18:11] -rw-r--r--. 2 boinc boinc     697424 Apr 28 00:56 input.tar.gz
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc  273297774 Apr 28 08:16 HITS.pool.root.1
[2026-04-28 08:18:11] -rw-------. 1 boinc boinc    2959360 Apr 28 08:18 result.tar.gz
08:18:13 (24112): run_atlas exited; CPU time 101193.056848
08:18:13 (24112): called boinc_finish(0)

</stderr_txt>
]]>

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