Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:23:45 (2258): wrapper (7.7.26015): starting
04:23:45 (2258): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 04:23:45] Arguments: --nthreads 8
[2026-04-28 04:23:45] Threads: 8
[2026-04-28 04:23:45] Checking for CVMFS
[2026-04-28 04:23:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 04:23:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 04:23:49] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 04:23:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 04:23:51] 2.11.2.0 28119 7028 79152 158950 3 53 14699401 25165824 96 130560 0 2381121 99.979 447776 2895 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 04:23:51] CVMFS is ok
[2026-04-28 04:23:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 04:23:51] Checking for apptainer binary...
[2026-04-28 04:23:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 04:23:51] Running /usr/bin/apptainer --version
[2026-04-28 04:23:51] apptainer version 1.3.2-1.el7
[2026-04-28 04:23:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 04:24:07] cg-vwn439.simple-grid.lan
[2026-04-28 04:24:07] apptainer works
[2026-04-28 04:24:07] Set ATHENA_PROC_NUMBER=8
[2026-04-28 04:24:07] Set ATHENA_CORE_NUMBER=8
[2026-04-28 04:24:07] Starting ATLAS job with PandaID=7116244056
[2026-04-28 04:24:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 12:18:44]  *** The last 200 lines of the pilot log: ***
[2026-04-28 12:18:44] 2026-04-28 10:17:43,353 | INFO     | this job has now completed (state=finished)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,353 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,353 | INFO     | log transfer has been attempted: DONE
[2026-04-28 12:18:44] 2026-04-28 10:17:43,353 | INFO     | job 7116244056 has finished - writing final server update
[2026-04-28 12:18:44] 2026-04-28 10:17:43,354 | INFO     | total number of processed events: 400 (read)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,356 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7116244056/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,357 | INFO     | extracted standard info from prmon json
[2026-04-28 12:18:44] 2026-04-28 10:17:43,357 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 12:18:44] 2026-04-28 10:17:43,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 12:18:44] 2026-04-28 10:17:43,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 12:18:44] 2026-04-28 10:17:43,366 | INFO     | fitting pss+swap vs Time
[2026-04-28 12:18:44] 2026-04-28 10:17:43,367 | INFO     | sum of square deviations: 28825106042.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,378 | INFO     | sum of deviations: 274810087522.00003
[2026-04-28 12:18:44] 2026-04-28 10:17:43,378 | INFO     | mean x (centered): 0.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,378 | INFO     | mean y: 2517023.9116997793
[2026-04-28 12:18:44] 2026-04-28 10:17:43,379 | INFO     | intersect: 2517023.9116997793
[2026-04-28 12:18:44] 2026-04-28 10:17:43,379 | INFO     | chi2: 9.755958197729294
[2026-04-28 12:18:44] 2026-04-28 10:17:43,380 | INFO     | sum of square deviations: 27881125552.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,387 | INFO     | sum of deviations: 302379722399.49994
[2026-04-28 12:18:44] 2026-04-28 10:17:43,387 | INFO     | mean x (centered): 0.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,387 | INFO     | mean y: 2521433.2879464286
[2026-04-28 12:18:44] 2026-04-28 10:17:43,387 | INFO     | intersect: 2521433.2879464286
[2026-04-28 12:18:44] 2026-04-28 10:17:43,388 | INFO     | chi2: 9.03045717394676
[2026-04-28 12:18:44] 2026-04-28 10:17:43,388 | INFO     | current chi2=9.03045717394676 (change=7.4364917220678075 %)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,388 | INFO     | right removable region: 447
[2026-04-28 12:18:44] 2026-04-28 10:17:43,389 | INFO     | sum of square deviations: 27881125552.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,395 | INFO     | sum of deviations: 101735459406.50005
[2026-04-28 12:18:44] 2026-04-28 10:17:43,396 | INFO     | mean x (centered): 0.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,396 | INFO     | mean y: 2544984.738839286
[2026-04-28 12:18:44] 2026-04-28 10:17:43,396 | INFO     | intersect: 2544984.738839286
[2026-04-28 12:18:44] 2026-04-28 10:17:43,397 | INFO     | chi2: 4.3257873951173424
[2026-04-28 12:18:44] 2026-04-28 10:17:43,397 | INFO     | current chi2=4.3257873951173424 (change=55.660045815651685 %)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,398 | INFO     | sum of square deviations: 26957982662.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,404 | INFO     | sum of deviations: -31344936192.999996
[2026-04-28 12:18:44] 2026-04-28 10:17:43,404 | INFO     | mean x (centered): 0.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,405 | INFO     | mean y: 2566955.6094808127
[2026-04-28 12:18:44] 2026-04-28 10:17:43,405 | INFO     | intersect: 2566955.6094808127
[2026-04-28 12:18:44] 2026-04-28 10:17:43,405 | INFO     | chi2: 1.2657903537170623
[2026-04-28 12:18:44] 2026-04-28 10:17:43,406 | INFO     | current chi2=1.2657903537170623 (change=70.73849826402007 %)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,406 | INFO     | sum of square deviations: 26055444809.5
[2026-04-28 12:18:44] 2026-04-28 10:17:43,424 | INFO     | sum of deviations: -63221404487.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,424 | INFO     | mean x (centered): 0.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,424 | INFO     | mean y: 2572317.1552511416
[2026-04-28 12:18:44] 2026-04-28 10:17:43,424 | INFO     | intersect: 2572317.1552511416
[2026-04-28 12:18:44] 2026-04-28 10:17:43,425 | INFO     | chi2: 0.9853026385892009
[2026-04-28 12:18:44] 2026-04-28 10:17:43,425 | INFO     | current chi2=0.9853026385892009 (change=22.159097223659032 %)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,425 | INFO     | left removable region: 15
[2026-04-28 12:18:44] 2026-04-28 10:17:43,426 | INFO     | sum of square deviations: 24999270588.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,432 | INFO     | sum of deviations: -32866762424.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,432 | INFO     | mean x (centered): 0.0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,433 | INFO     | mean y: 2577516.972222222
[2026-04-28 12:18:44] 2026-04-28 10:17:43,433 | INFO     | intersect: 2577516.972222222
[2026-04-28 12:18:44] 2026-04-28 10:17:43,433 | INFO     | chi2: 0.19847473903278817
[2026-04-28 12:18:44] 2026-04-28 10:17:43,434 | INFO     | current memory leak: -1.31 B/s (using 432 data points, chi2=0.20)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,434 | INFO     | could have reported an average CPU frequency of 1999 MHz (19 samples)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | ..............................
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | . Timing measurements:
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | . get job = 0 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | . initial setup = 126 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | . payload setup = 253 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | . stage-in = 0 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,435 | INFO     | . payload execution = 27739 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,436 | INFO     | . stage-out = 3 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,436 | INFO     | . log creation = 1 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,436 | INFO     | ..............................
[2026-04-28 12:18:44] 2026-04-28 10:17:43,756 | INFO     | 
[2026-04-28 12:18:44] 2026-04-28 10:17:43,756 | INFO     | job summary report
[2026-04-28 12:18:44] 2026-04-28 10:17:43,756 | INFO     | --------------------------------------------------
[2026-04-28 12:18:44] 2026-04-28 10:17:43,756 | INFO     | PanDA job id: 7116244056
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | task id: 49820375
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | errors: (none)
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | pilot state: finished 
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | transexitcode: 0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | exeerrorcode: 0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | exeerrordiag: 
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | exitcode: 0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,757 | INFO     | exitmsg: OK
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | cpuconsumptiontime: 106208 s
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | nevents: 400
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | neventsw: 0
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | pid: 10715
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | pgrp: 10715
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | corecount: 8
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | event service: False
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | sizes: {0: 2280054, 1: 2281112, 2: 2282540, 13: 2282568, 27996: 2319518, 28001: 2328516, 28003: 2328700, 28005: 2328894}
[2026-04-28 12:18:44] 2026-04-28 10:17:43,758 | INFO     | --------------------------------------------------
[2026-04-28 12:18:44] 2026-04-28 10:17:43,759 | INFO     | 
[2026-04-28 12:18:44] 2026-04-28 10:17:43,759 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-04-28 12:18:44] 2026-04-28 10:17:44,198 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,198 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,198 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,198 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | job 7116244056 has completed (purged errors)
[2026-04-28 12:18:44] 2026-04-28 10:17:44,200 | INFO     | overall cleanup function is called
[2026-04-28 12:18:44] 2026-04-28 10:17:45,210 | INFO     | --- collectZombieJob: --- 10, [10715]
[2026-04-28 12:18:44] 2026-04-28 10:17:45,210 | INFO     | zombie collector waiting for pid 10715
[2026-04-28 12:18:44] 2026-04-28 10:17:45,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 12:18:44] 2026-04-28 10:17:45,210 | INFO     | collected zombie processes
[2026-04-28 12:18:44] 2026-04-28 10:17:45,211 | INFO     | will attempt to kill all subprocesses of pid=10715
[2026-04-28 12:18:44] 2026-04-28 10:17:45,276 | INFO     | process IDs to be killed: [10715] (in reverse order)
[2026-04-28 12:18:44] 2026-04-28 10:17:46,184 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 12:18:44] 2026-04-28 10:17:46,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 12:18:44] 2026-04-28 10:17:46,187 | INFO     | did not find any defunct processes belonging to 10715
[2026-04-28 12:18:44] 2026-04-28 10:17:46,189 | INFO     | did not find any defunct processes belonging to 10715
[2026-04-28 12:18:44] 2026-04-28 10:17:46,189 | INFO     | Ready for new job
[2026-04-28 12:18:44] 2026-04-28 10:17:46,191 | INFO     | ***************************************
[2026-04-28 12:18:44] 2026-04-28 10:17:46,192 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 12:18:44] 2026-04-28 10:17:46,192 | INFO     | ***************************************
[2026-04-28 12:18:44] 2026-04-28 10:17:46,192 | INFO     | 
[2026-04-28 12:18:44] 2026-04-28 10:17:46,193 | INFO     | pilot is running in a VM
[2026-04-28 12:18:44] 2026-04-28 10:17:46,193 | INFO     | architecture information:
[2026-04-28 12:18:44] 2026-04-28 10:17:46,202 | INFO     | executing command: cat /etc/os-release
[2026-04-28 12:18:44] 2026-04-28 10:17:46,463 | INFO     | cat /etc/os-release:
[2026-04-28 12:18:44] NAME="CentOS Linux"
[2026-04-28 12:18:44] VERSION="7 (Core)"
[2026-04-28 12:18:44] ID="centos"
[2026-04-28 12:18:44] ID_LIKE="rhel fedora"
[2026-04-28 12:18:44] VERSION_ID="7"
[2026-04-28 12:18:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 12:18:44] ANSI_COLOR="0;31"
[2026-04-28 12:18:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 12:18:44] HOME_URL="https://www.centos.org/"
[2026-04-28 12:18:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 12:18:44] 
[2026-04-28 12:18:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 12:18:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 12:18:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 12:18:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 12:18:44] 
[2026-04-28 12:18:44] 2026-04-28 10:17:46,464 | INFO     | ***************************************
[2026-04-28 12:18:44] 2026-04-28 10:17:46,967 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-04-28 12:18:44] 2026-04-28 10:17:47,166 | INFO     | sufficient remaining disk space (489777266688 B)
[2026-04-28 12:18:44] 2026-04-28 10:17:47,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 12:18:44] 2026-04-28 10:17:47,166 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 12:18:44] 2026-04-28 10:17:47,166 | INFO     | update_server=False
[2026-04-28 12:18:44] 2026-04-28 10:17:47,166 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 12:18:44] 2026-04-28 10:17:47,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 12:18:44] 2026-04-28 10:17:47,305 | INFO     | aborting loop
[2026-04-28 12:18:44] 2026-04-28 10:17:47,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 12:18:44] 2026-04-28 10:17:47,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 12:18:44] 2026-04-28 10:17:48,095 | INFO     | all data control threads have been joined
[2026-04-28 12:18:44] 2026-04-28 10:17:48,172 | INFO     | [job] retrieve thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:48,244 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:48,298 | INFO     | all job control threads have been joined
[2026-04-28 12:18:44] 2026-04-28 10:17:48,311 | INFO     | [job] job monitor thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:48,335 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:48,655 | INFO     | all payload control threads have been joined
[2026-04-28 12:18:44] 2026-04-28 10:17:48,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 12:18:44] 2026-04-28 10:17:48,812 | INFO     | [data] copytool_in thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:48,984 | INFO     | [job] validate thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,101 | INFO     | [data] control thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,153 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,304 | INFO     | [job] control thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,403 | INFO     | [payload] failed_post thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,469 | INFO     | [data] copytool_out thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,482 | INFO     | [payload] validate_post thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,537 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,662 | INFO     | [payload] control thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:49,717 | INFO     | [job] queue monitor thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:17:51,809 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 12:18:44] 2026-04-28 10:18:15,814 | INFO     | PID=6237 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-28 12:18:44] 2026-04-28 10:18:15,814 | INFO     | .. there are 2 such processes running
[2026-04-28 12:18:44] 2026-04-28 10:18:15,821 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 12:18:44] 2026-04-28 10:18:15,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 12:18:44] 2026-04-28 10:18:15,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 12:18:44] 2026-04-28 10:18:33,458 | INFO     | [monitor] cgroup control has ended
[2026-04-28 12:18:44] 2026-04-28 10:18:33,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714425796416)>', '<ExcThread(monitor, started 140713832462080)>']
[2026-04-28 12:18:44] 2026-04-28 10:18:33,931 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 12:18:44] 2026-04-28 10:18:33,931 | INFO     | [monitor] control thread has ended
[2026-04-28 12:18:44] 2026-04-28 10:18:38,533 | INFO     | all workflow threads have been joined
[2026-04-28 12:18:44] 2026-04-28 10:18:38,533 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 12:18:44] 2026-04-28 10:18:38,534 | INFO     | traces error code: 0
[2026-04-28 12:18:44] 2026-04-28 10:18:38,534 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 12:18:44] 2026-04-28 10:18:39,107 [wrapper] ==== pilot stdout END ====
[2026-04-28 12:18:44] 2026-04-28 10:18:39,207 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 12:18:44] 2026-04-28 10:18:39,286 [wrapper] pilotpid: 6237
[2026-04-28 12:18:44] 2026-04-28 10:18:39,380 [wrapper] Pilot exit status: 0
[2026-04-28 12:18:44] 2026-04-28 10:18:39,768 [wrapper] pandaids: 7116244056
[2026-04-28 12:18:44] 2026-04-28 10:18:40,908 [wrapper] cleanup supervisor_pilot 19857 6238
[2026-04-28 12:18:44] 2026-04-28 10:18:40,994 [wrapper] Test setup, not cleaning
[2026-04-28 12:18:44] 2026-04-28 10:18:41,114 [wrapper] apfmon messages muted
[2026-04-28 12:18:44] 2026-04-28 10:18:41,204 [wrapper] ==== wrapper stdout END ====
[2026-04-28 12:18:44] 2026-04-28 10:18:41,271 [wrapper] ==== wrapper stderr END ====
[2026-04-28 12:18:44]  *** Error codes and diagnostics ***
[2026-04-28 12:18:44]     "exeErrorCode": 0,
[2026-04-28 12:18:44]     "pilotErrorCode": 0,
[2026-04-28 12:18:44]  *** Listing of results directory ***
[2026-04-28 12:18:44] total 2439364
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc     683926 Apr 27 09:25 pilot3.tar.gz
[2026-04-28 12:18:44] -rwx------. 1 boinc boinc      36322 Apr 27 09:26 runpilot2-wrapper.sh
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc       5631 Apr 27 09:27 queuedata.json
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc        100 Apr 28 04:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 12:18:44] -rwxr-xr-x. 1 boinc boinc       7986 Apr 28 04:23 run_atlas
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc        105 Apr 28 04:23 job.xml
[2026-04-28 12:18:44] -rw-r--r--. 2 boinc boinc 2212778147 Apr 28 04:23 EVNT.49820373._000050.pool.root.1
[2026-04-28 12:18:44] -rw-r--r--. 2 boinc boinc      15667 Apr 28 04:23 start_atlas.sh
[2026-04-28 12:18:44] drwxrwx--x. 2 boinc boinc         68 Apr 28 04:23 shared
[2026-04-28 12:18:44] -rw-r--r--. 2 boinc boinc     697423 Apr 28 04:23 input.tar.gz
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc       6306 Apr 28 04:23 init_data.xml
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc          0 Apr 28 04:23 boinc_lockfile
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc       2584 Apr 28 04:24 pandaJob.out
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc        415 Apr 28 04:30 workernode_map.json
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc     997414 Apr 28 04:30 agis_schedconf.cvmfs.json
[2026-04-28 12:18:44] drwx------. 5 boinc boinc       4096 Apr 28 04:30 pilot3
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc  274621776 Apr 28 12:15 HITS.49820375._017021.pool.root.1
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc        491 Apr 28 12:16 boinc_task_state.xml
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc       1012 Apr 28 12:17 memory_monitor_summary.json
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc    1512704 Apr 28 12:17 agis_ddmendpoints.agis.ALL.json
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc     632891 Apr 28 12:17 log.49820375._017021.job.log.tgz.1
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc       6339 Apr 28 12:17 heartbeat_new.json
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc       6230 Apr 28 12:17 heartbeat.json
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc         95 Apr 28 12:18 pilot_heartbeat.json
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc       8192 Apr 28 12:18 boinc_mmap_file
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc         29 Apr 28 12:18 wrapper_checkpoint.txt
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc       4882 Apr 28 12:18 pilotlog.txt
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc    2556949 Apr 28 12:18 log.49820375._017021.job.log.1
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc        357 Apr 28 12:18 output.list
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc        410 Apr 28 12:18 runtime_log
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc    3205120 Apr 28 12:18 result.tar.gz
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc       8439 Apr 28 12:18 runtime_log.err
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc        658 Apr 28 12:18 0f9cff5f2145.diag
[2026-04-28 12:18:44] -rw-r--r--. 1 boinc boinc      20645 Apr 28 12:18 stderr.txt
[2026-04-28 12:18:44] HITS file was successfully produced:
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc 274621776 Apr 28 12:15 shared/HITS.pool.root.1
[2026-04-28 12:18:44]  *** Contents of shared directory: ***
[2026-04-28 12:18:44] total 2432940
[2026-04-28 12:18:44] -rw-r--r--. 2 boinc boinc 2212778147 Apr 28 04:23 ATLAS.root_0
[2026-04-28 12:18:44] -rw-r--r--. 2 boinc boinc      15667 Apr 28 04:23 start_atlas.sh
[2026-04-28 12:18:44] -rw-r--r--. 2 boinc boinc     697423 Apr 28 04:23 input.tar.gz
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc  274621776 Apr 28 12:15 HITS.pool.root.1
[2026-04-28 12:18:44] -rw-------. 1 boinc boinc    3205120 Apr 28 12:18 result.tar.gz
12:18:45 (2258): run_atlas exited; CPU time 106498.862577
12:18:45 (2258): called boinc_finish(0)

</stderr_txt>
]]>

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