Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-05-03 02:37:09 (23612): vboxwrapper version 26210
2026-05-03 02:37:09 (23612): BOINC client version: 8.0.2
2026-05-03 02:37:09 (23612): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2026-05-03 02:37:10 (23612): Successfully copied 'init_data.xml' to the shared directory.
2026-05-03 02:37:10 (23612): Create VM. (boinc_03f73ae0a6632eb9, slot#0)
2026-05-03 02:37:11 (23612): Setting Memory Size for VM. (4300MB)
2026-05-03 02:37:11 (23612): Setting CPU Count for VM. (3)
2026-05-03 02:37:11 (23612): Setting Chipset Options for VM.
2026-05-03 02:37:11 (23612): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-05-03 02:37:12 (23612): Setting Boot Options for VM.
2026-05-03 02:37:12 (23612): Setting Network Configuration for NAT. (Driver: virtio)
2026-05-03 02:37:12 (23612): Enabling VM Network Access.
2026-05-03 02:37:13 (23612): Disabling USB Support for VM.
2026-05-03 02:37:13 (23612): Disabling COM Port Support for VM.
2026-05-03 02:37:13 (23612): Disabling LPT Port Support for VM.
2026-05-03 02:37:13 (23612): Disabling Audio Support for VM.
2026-05-03 02:37:14 (23612): Disabling Clipboard Support for VM.
2026-05-03 02:37:14 (23612): Disabling Drag and Drop Support for VM.
2026-05-03 02:37:14 (23612): Adding storage controller(s) to VM.
2026-05-03 02:37:14 (23612): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-05-03 02:37:15 (23612): Adding VirtualBox Guest Additions to VM.
2026-05-03 02:37:15 (23612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-05-03 02:37:16 (23612): forwarding host port 62375 to guest port 80
2026-05-03 02:37:16 (23612): Enabling remote desktop for VM.
2026-05-03 02:37:16 (23612): Required extension pack not installed, remote desktop not enabled.
2026-05-03 02:37:16 (23612): Enabling shared directory for VM.
2026-05-03 02:37:17 (23612): Starting VM using VBoxManage interface. (boinc_03f73ae0a6632eb9, slot#0)
2026-05-03 02:37:23 (23612): Successfully started VM. (PID = '2364')
2026-05-03 02:37:23 (23612): Reporting VM Process ID to BOINC.
2026-05-03 02:37:23 (23612): Guest Log: BIOS: VirtualBox 7.2.4
2026-05-03 02:37:23 (23612): Guest Log: CPUID EDX: 0x178bfbff
2026-05-03 02:37:23 (23612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-05-03 02:37:23 (23612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-05-03 02:37:23 (23612): VM state change detected. (old = 'poweredoff', new = 'running')
2026-05-03 02:37:23 (23612): Detected: Web Application Enabled (http://localhost:62375)
2026-05-03 02:37:23 (23612): Preference change detected
2026-05-03 02:37:23 (23612): Setting CPU throttle for VM. (80%)
2026-05-03 02:37:23 (23612): Setting network throttle for VM. (54KB)
2026-05-03 02:37:24 (23612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2026-05-03 02:37:25 (23612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-05-03 02:37:25 (23612): Guest Log: BIOS: Booting from Hard Disk...
2026-05-03 02:37:28 (23612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-05-03 02:37:28 (23612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-05-03 02:37:28 (23612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-05-03 02:37:41 (23612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-05-03 02:37:41 (23612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-05-03 02:37:50 (23612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000276 main     Log opened 2026-05-03T02:37:48.455233000Z
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000772 main     OS Product: Linux
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000820 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000854 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000887 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000888 main     Process ID: 1290
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.000888 main     Package type: LINUX_64BITS_GENERIC
2026-05-03 02:37:50 (23612): Guest Log: 00:00:00.002104 main     5.2.32 r132073 started. Verbose level = 0
2026-05-03 02:37:50 (23612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-05-03 02:37:50 (23612): Guest Log: [INFO] Mounting shared directory
2026-05-03 02:37:50 (23612): Guest Log: [INFO] Checking for init_data.xml
2026-05-03 02:37:53 (23612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-05-03 02:37:53 (23612): Guest Log: [INFO] Detected branch: prod
2026-05-03 02:37:54 (23612): Guest Log: This is the prod version of the ATLAS job wrapper
2026-05-03 02:37:54 (23612): Guest Log: Copying input files
2026-05-03 02:38:00 (23612): Guest Log: 00:00:10.007470 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 391 430 000ns (GuestNow=1 777 768 680 069 469 000 ns GuestLast=1 777 775 868 460 899 000 ns fSetTimeLastLoop=true )
2026-05-03 02:38:59 (23612): Guest Log: Copied input files into RunAtlas.
2026-05-03 02:38:59 (23612): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-05-03 02:39:00 (23612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-05-03 02:39:00 (23612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-05-03 02:39:00 (23612): Guest Log: Further information can be found at the LHC@home message board.
2026-05-03 02:39:10 (23612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-05-03 02:39:10 (23612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-05-03 02:39:10 (23612): Guest Log: 2.6.3.0 1564 1 32172 159149 4 1 3117648 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-05-03 02:39:25 (23612): Guest Log: copied the webapp to /var/www
2026-05-03 02:39:25 (23612): Guest Log: ATHENA_PROC_NUMBER=3
2026-05-03 02:39:25 (23612): Guest Log: ATHENA_CORE_NUMBER=3
2026-05-03 02:39:25 (23612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-05-03 02:39:25 (23612): Guest Log:  *** Starting ATLAS job. (PandaID=7116243868 taskID=49820375) ***
2026-05-03 04:40:16 (23612): Status Report: Elapsed Time: '6000.470026'
2026-05-03 04:40:21 (23612): Status Report: CPU Time: '15536.484375'
2026-05-03 06:55:16 (23612): Status Report: Elapsed Time: '12003.468025'
2026-05-03 06:55:16 (23612): Status Report: CPU Time: '32215.703125'
2026-05-03 09:09:57 (23612): Status Report: Elapsed Time: '18015.811953'
2026-05-03 09:09:57 (23612): Status Report: CPU Time: '48145.906250'
2026-05-03 11:22:51 (23612): Status Report: Elapsed Time: '24019.880844'
2026-05-03 11:22:51 (23612): Status Report: CPU Time: '63481.453125'
2026-05-03 13:35:32 (23612): Status Report: Elapsed Time: '30024.209511'
2026-05-03 13:35:32 (23612): Status Report: CPU Time: '78476.671875'
2026-05-03 15:32:10 (23612): Status Report: Elapsed Time: '36024.673382'
2026-05-03 15:32:10 (23612): Status Report: CPU Time: '86329.296875'
2026-05-03 15:45:14 (23612): Guest Log:  *** Job finished ***
2026-05-03 15:45:14 (23612): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:22,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:26,074 | INFO     | [monitor] cgroup control has ended
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:27,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139934240339776)>', '<ExcThread(monitor, started 139933440268032)>']
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:27,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:27,785 | INFO     | [monitor] control thread has ended
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,499 | INFO     | all workflow threads have been joined
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,499 | INFO     | end of generic workflow (traces error code: 0)
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,500 | INFO     | traces error code: 0
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,500 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,706 [wrapper] ==== pilot stdout END ====
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,717 [wrapper] ==== wrapper stdout RESUME ====
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,729 [wrapper] pilotpid: 5978
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:41:32,739 [wrapper] Pilot exit status: 0
2026-05-03 15:45:14 (23612): Guest Log: ./runpilot2-wrapper.sh: line 1019: /usr/bin/xargs: Input/output error
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:45:13,517 [wrapper] pandaids: 
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:45:13,654 [wrapper] cleanup supervisor_pilot  7227 5979
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:45:13,669 [wrapper] Test setup, not cleaning
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:45:13,678 [wrapper] apfmon messages muted
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:45:13,686 [wrapper] ==== wrapper stdout END ====
2026-05-03 15:45:14 (23612): Guest Log: 2026-05-03 13:45:13,696 [wrapper] ==== wrapper stderr END ====
2026-05-03 15:45:14 (23612): Guest Log:  *** Error codes and diagnostics ***
2026-05-03 15:45:14 (23612): Guest Log:     "exeErrorCode": 68,
2026-05-03 15:45:14 (23612): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2026-05-03 15:45:14 (23612): Guest Log:     "pilotErrorCode": 1305,
2026-05-03 15:45:14 (23612): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2026-05-03 15:45:14 (23612): Guest Log:  *** Listing of results directory ***
2026-05-03 15:45:14 (23612): Guest Log: total 12092
2026-05-03 15:45:14 (23612): Guest Log: -rw-r--r--. 1 atlas atlas  683926 Apr 27 07:25 pilot3.tar.gz
2026-05-03 15:45:14 (23612): Guest Log: -rwx------. 1 atlas atlas   36322 Apr 27 07:26 runpilot2-wrapper.sh
2026-05-03 15:45:14 (23612): Guest Log: -rw-r--r--. 1 atlas atlas    5631 Apr 27 07:27 queuedata.json
2026-05-03 15:45:14 (23612): Guest Log: -rwxr-xr-x. 1 atlas atlas    8898 May  3 00:38 init_data.xml
2026-05-03 15:45:14 (23612): Guest Log: -rwxr-xr-x. 1 atlas atlas  697425 May  3 00:38 input.tar.gz
2026-05-03 15:45:14 (23612): Guest Log: -rwxr-xr-x. 1 atlas atlas   15667 May  3 00:38 start_atlas.sh
2026-05-03 15:45:14 (23612): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May  3 00:38 EVNT.49820373._000049.pool.root.1 -> /data/./ATLAS.root_0
2026-05-03 15:45:14 (23612): Guest Log: -rw-r--r--. 1 atlas atlas    2584 May  3 00:39 pandaJob.out
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas 1002964 May  3 00:40 agis_schedconf.cvmfs.json
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas     426 May  3 00:40 workernode_map.json
2026-05-03 15:45:14 (23612): Guest Log: drwx------. 5 atlas atlas    4096 May  3 00:40 pilot3
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas    1032 May  3 13:13 memory_monitor_summary.json
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas  723904 May  3 13:24 log.49820375._016833.job.log.tgz.1
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas       0 May  3 13:28 agis_ddmendpoints.agis.ALL.json
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas    8883 May  3 13:40 heartbeat_new.json
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas    8844 May  3 13:40 heartbeat.json
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas      95 May  3 13:41 pilot_heartbeat.json
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas    4804 May  3 13:41 pilotlog.txt
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas 4185512 May  3 13:45 log.49820375._016833.job.log.1
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas     188 May  3 13:45 output.list
2026-05-03 15:45:14 (23612): Guest Log: -rw-r--r--. 1 atlas atlas     410 May  3 13:45 runtime_log
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas 4925440 May  3 13:45 result.tar.gz
2026-05-03 15:45:14 (23612): Guest Log: -rw-r--r--. 1 atlas atlas    8229 May  3 13:45 runtime_log.err
2026-05-03 15:45:14 (23612): Guest Log: -rw-------. 1 atlas atlas     662 May  3 13:45 0f92c7ab992c.diag
2026-05-03 15:45:14 (23612): Guest Log: Looking for outputfile HITS.49820375._016833.pool.root.1
2026-05-03 15:45:14 (23612): Guest Log: No HITS file was produced
2026-05-03 15:45:14 (23612): Guest Log: Successfully finished the ATLAS job!
2026-05-03 15:45:14 (23612): Guest Log: Copying the results back to the shared directory!
2026-05-03 15:45:14 (23612): Guest Log:  *** Contents of shared directory: ***
2026-05-03 15:45:14 (23612): Guest Log: total 2200720
2026-05-03 15:45:14 (23612): Guest Log: -rwxrwxrwx. 1 root root 2247878637 May  3 00:37 ATLAS.root_0
2026-05-03 15:45:14 (23612): Guest Log: -rwxrwxrwx. 1 root root       8898 May  3 00:37 init_data.xml
2026-05-03 15:45:14 (23612): Guest Log: -rwxrwxrwx. 1 root root     697425 Apr 28 20:42 input.tar.gz
2026-05-03 15:45:14 (23612): Guest Log: -rwxrwxrwx. 1 root root    4925440 May  3 13:45 result.tar.gz
2026-05-03 15:45:14 (23612): Guest Log: -rwxrwxrwx. 1 root root      15667 Apr 28 20:42 start_atlas.sh
2026-05-03 15:45:14 (23612): Guest Log:  *** Success! Shutting down the machine. ***
2026-05-03 15:45:14 (23612): VM Completion File Detected.
2026-05-03 15:45:14 (23612): Powering off VM.
2026-05-03 15:45:16 (23612): Successfully stopped VM.
2026-05-03 15:45:16 (23612): Deregistering VM. (boinc_03f73ae0a6632eb9, slot#0)
2026-05-03 15:45:16 (23612): Removing network bandwidth throttle group from VM.
2026-05-03 15:45:17 (23612): Removing VM from VirtualBox.
2026-05-03 15:45:22 (23612): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN