Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:36:13 (2388309): wrapper (7.7.26015): starting
22:36:13 (2388309): wrapper: running run_atlas (--nthreads 3)
[2026-04-27 22:36:13] Arguments: --nthreads 3
[2026-04-27 22:36:13] Threads: 3
[2026-04-27 22:36:13] Checking for CVMFS
[2026-04-27 22:36:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-27 22:36:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-27 22:36:14] Running cvmfs_config stat atlas.cern.ch
[2026-04-27 22:36:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-27 22:36:14] 2.9.2.0 2155226 1913 75788 158940 1 50 34661924 36864001 0 130560 0 888393 99.983 72679 17072 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-27 22:36:14] CVMFS is ok
[2026-04-27 22:36:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-27 22:36:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-27 22:36:14] Further information can be found at the LHC@home message board.
[2026-04-27 22:36:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-27 22:36:14] Checking for apptainer binary...
[2026-04-27 22:36:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-27 22:36:14] Running /usr/bin/apptainer --version
[2026-04-27 22:36:14] apptainer version 1.4.1-1.1
[2026-04-27 22:36:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-27 22:36:14] thA335a
[2026-04-27 22:36:14] apptainer works
[2026-04-27 22:36:14] Set ATHENA_PROC_NUMBER=3
[2026-04-27 22:36:14] Set ATHENA_CORE_NUMBER=3
[2026-04-27 22:36:14] Starting ATLAS job with PandaID=7116216435
[2026-04-27 22:36:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 01:03:44]  *** The last 200 lines of the pilot log: ***
[2026-04-28 01:03:44] 2026-04-27 23:03:00,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 01:03:44] 2026-04-27 23:03:00,513 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 01:03:44] 2026-04-27 23:03:00,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 01:03:44] 2026-04-27 23:03:00,513 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 01:03:44] 2026-04-27 23:03:00,513 | INFO     | job 7116216435 has completed (purged errors)
[2026-04-28 01:03:44] 2026-04-27 23:03:00,513 | INFO     | overall cleanup function is called
[2026-04-28 01:03:44] 2026-04-27 23:03:01,520 | INFO     | --- collectZombieJob: --- 10, [2396804]
[2026-04-28 01:03:44] 2026-04-27 23:03:01,520 | INFO     | zombie collector waiting for pid 2396804
[2026-04-28 01:03:44] 2026-04-27 23:03:01,520 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 01:03:44] 2026-04-27 23:03:01,520 | INFO     | collected zombie processes
[2026-04-28 01:03:44] 2026-04-27 23:03:01,520 | INFO     | will attempt to kill all subprocesses of pid=2396804
[2026-04-28 01:03:44] 2026-04-27 23:03:01,552 | INFO     | process IDs to be killed: [2396804] (in reverse order)
[2026-04-28 01:03:44] 2026-04-27 23:03:01,577 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 01:03:44] 2026-04-27 23:03:01,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 01:03:44] 2026-04-27 23:03:01,579 | INFO     | did not find any defunct processes belonging to 2396804
[2026-04-28 01:03:44] 2026-04-27 23:03:01,580 | INFO     | did not find any defunct processes belonging to 2396804
[2026-04-28 01:03:44] 2026-04-27 23:03:01,580 | INFO     | Ready for new job
[2026-04-28 01:03:44] 2026-04-27 23:03:01,580 | INFO     | ***************************************
[2026-04-28 01:03:44] 2026-04-27 23:03:01,580 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 01:03:44] 2026-04-27 23:03:01,581 | INFO     | ***************************************
[2026-04-28 01:03:44] 2026-04-27 23:03:01,581 | INFO     | 
[2026-04-28 01:03:44] 2026-04-27 23:03:01,581 | INFO     | architecture information:
[2026-04-28 01:03:44] 2026-04-27 23:03:01,581 | INFO     | executing command: cat /etc/os-release
[2026-04-28 01:03:44] 2026-04-27 23:03:01,590 | INFO     | cat /etc/os-release:
[2026-04-28 01:03:44] NAME="CentOS Linux"
[2026-04-28 01:03:44] VERSION="7 (Core)"
[2026-04-28 01:03:44] ID="centos"
[2026-04-28 01:03:44] ID_LIKE="rhel fedora"
[2026-04-28 01:03:44] VERSION_ID="7"
[2026-04-28 01:03:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 01:03:44] ANSI_COLOR="0;31"
[2026-04-28 01:03:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 01:03:44] HOME_URL="https://www.centos.org/"
[2026-04-28 01:03:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 01:03:44] 
[2026-04-28 01:03:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 01:03:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 01:03:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 01:03:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 01:03:44] 
[2026-04-28 01:03:44] 2026-04-27 23:03:01,590 | INFO     | ***************************************
[2026-04-28 01:03:44] 2026-04-27 23:03:02,094 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-28 01:03:44] 2026-04-27 23:03:02,107 | INFO     | sufficient remaining disk space (360515108864 B)
[2026-04-28 01:03:44] 2026-04-27 23:03:02,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 01:03:44] 2026-04-27 23:03:02,107 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 01:03:44] 2026-04-27 23:03:02,107 | INFO     | update_server=False
[2026-04-28 01:03:44] 2026-04-27 23:03:02,107 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 01:03:44] 2026-04-27 23:03:02,108 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 01:03:44] 2026-04-27 23:03:02,217 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-28 01:03:44] 2026-04-27 23:03:02,217 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-28 01:03:44] 2026-04-27 23:03:02,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 01:03:44] 2026-04-27 23:03:02,217 | INFO     | will abort loop
[2026-04-28 01:03:44] 2026-04-27 23:03:03,013 | INFO     | all payload control threads have been joined
[2026-04-28 01:03:44] 2026-04-27 23:03:03,113 | INFO     | [job] retrieve thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:03,113 | INFO     | [job] queue monitor thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:03,130 | INFO     | all data control threads have been joined
[2026-04-28 01:03:44] 2026-04-27 23:03:03,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 01:03:44] 2026-04-27 23:03:03,223 | INFO     | [job] job monitor thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:03,516 | INFO     | all job control threads have been joined
[2026-04-28 01:03:44] 2026-04-27 23:03:03,626 | INFO     | [payload] failed_post thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:03,989 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,016 | INFO     | [payload] control thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,119 | INFO     | [job] validate thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,136 | INFO     | [data] control thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,150 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,222 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,397 | INFO     | [data] copytool_in thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,413 | INFO     | [payload] validate_post thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,522 | INFO     | [job] control thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:04,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 01:03:44] 2026-04-27 23:03:05,160 | INFO     | [data] copytool_out thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:08,559 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:12,672 | INFO     | job.realtimelogging is not enabled
[2026-04-28 01:03:44] 2026-04-27 23:03:13,678 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 01:03:44] 2026-04-27 23:03:32,371 | INFO     | PID=2392370 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-28 01:03:44] 2026-04-27 23:03:32,372 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 01:03:44] 2026-04-27 23:03:32,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 01:03:44] 2026-04-27 23:03:32,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 01:03:44] 2026-04-27 23:03:37,440 | INFO     | [monitor] cgroup control has ended
[2026-04-28 01:03:44] 2026-04-27 23:03:39,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769676322624)>', '<ExcThread(monitor, started 139768973227776)>']
[2026-04-28 01:03:44] 2026-04-27 23:03:39,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 01:03:44] 2026-04-27 23:03:39,408 | INFO     | [monitor] control thread has ended
[2026-04-28 01:03:44] 2026-04-27 23:03:44,255 | INFO     | all workflow threads have been joined
[2026-04-28 01:03:44] 2026-04-27 23:03:44,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 01:03:44] 2026-04-27 23:03:44,255 | INFO     | traces error code: 0
[2026-04-28 01:03:44] 2026-04-27 23:03:44,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 01:03:44] 2026-04-27 23:03:44,306 [wrapper] ==== pilot stdout END ====
[2026-04-28 01:03:44] 2026-04-27 23:03:44,309 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 01:03:44] 2026-04-27 23:03:44,311 [wrapper] pilotpid: 2392370
[2026-04-28 01:03:44] 2026-04-27 23:03:44,314 [wrapper] Pilot exit status: 0
[2026-04-28 01:03:44] 2026-04-27 23:03:44,322 [wrapper] pandaids: 7116216435
[2026-04-28 01:03:44] 2026-04-27 23:03:44,338 [wrapper] cleanup supervisor_pilot 2402973 2392371
[2026-04-28 01:03:44] 2026-04-27 23:03:44,341 [wrapper] Test setup, not cleaning
[2026-04-28 01:03:44] 2026-04-27 23:03:44,343 [wrapper] apfmon messages muted
[2026-04-28 01:03:44] 2026-04-27 23:03:44,346 [wrapper] ==== wrapper stdout END ====
[2026-04-28 01:03:44] 2026-04-27 23:03:44,348 [wrapper] ==== wrapper stderr END ====
[2026-04-28 01:03:44]  *** Error codes and diagnostics ***
[2026-04-28 01:03:44]     "exeErrorCode": 0,
[2026-04-28 01:03:44]     "pilotErrorCode": 0,
[2026-04-28 01:03:44]  *** Listing of results directory ***
[2026-04-28 01:03:44] total 2466192
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc     683926 Apr 27 04:13 pilot3.tar.gz
[2026-04-28 01:03:44] -rwx------ 1 boinc boinc      36322 Apr 27 04:42 runpilot2-wrapper.sh
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc       5631 Apr 27 04:42 queuedata.json
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc        100 Apr 27 22:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 01:03:44] -rwxr-xr-x 1 boinc boinc       7986 Apr 27 22:36 run_atlas
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc        105 Apr 27 22:36 job.xml
[2026-04-28 01:03:44] -rw-r--r-- 2 boinc boinc 2241440418 Apr 27 22:36 EVNT.49820242._000032.pool.root.1
[2026-04-28 01:03:44] -rw-r--r-- 2 boinc boinc     697408 Apr 27 22:36 input.tar.gz
[2026-04-28 01:03:44] -rw-r--r-- 2 boinc boinc      15667 Apr 27 22:36 start_atlas.sh
[2026-04-28 01:03:44] drwxrwx--x 2 boinc boinc       4096 Apr 27 22:36 shared
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc          0 Apr 27 22:36 boinc_setup_complete
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc       6363 Apr 27 22:36 init_data.xml
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc          0 Apr 27 22:36 boinc_lockfile
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc       2549 Apr 27 22:36 pandaJob.out
[2026-04-28 01:03:44] -rw------- 1 boinc boinc     997821 Apr 27 22:36 agis_schedconf.cvmfs.json
[2026-04-28 01:03:44] -rw------- 1 boinc boinc    1512704 Apr 27 22:36 agis_ddmendpoints.agis.ALL.json
[2026-04-28 01:03:44] -rw------- 1 boinc boinc        424 Apr 27 22:36 workernode_map.json
[2026-04-28 01:03:44] drwx------ 5 boinc boinc       4096 Apr 27 22:36 pilot3
[2026-04-28 01:03:44] -rw------- 1 boinc boinc  277416606 Apr 28 01:02 HITS.49820244._019186.pool.root.1
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc        488 Apr 28 01:02 boinc_task_state.xml
[2026-04-28 01:03:44] -rw------- 1 boinc boinc       1022 Apr 28 01:02 memory_monitor_summary.json
[2026-04-28 01:03:44] -rw------- 1 boinc boinc     369302 Apr 28 01:02 log.49820244._019186.job.log.tgz.1
[2026-04-28 01:03:44] -rw------- 1 boinc boinc       6323 Apr 28 01:03 heartbeat_new.json
[2026-04-28 01:03:44] -rw------- 1 boinc boinc       6214 Apr 28 01:03 heartbeat.json
[2026-04-28 01:03:44] -rw------- 1 boinc boinc         95 Apr 28 01:03 pilot_heartbeat.json
[2026-04-28 01:03:44] -rw------- 1 boinc boinc       5009 Apr 28 01:03 pilotlog.txt
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc       8192 Apr 28 01:03 boinc_mmap_file
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc         27 Apr 28 01:03 wrapper_checkpoint.txt
[2026-04-28 01:03:44] -rw------- 1 boinc boinc     826816 Apr 28 01:03 log.49820244._019186.job.log.1
[2026-04-28 01:03:44] -rw------- 1 boinc boinc        357 Apr 28 01:03 output.list
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc        410 Apr 28 01:03 runtime_log
[2026-04-28 01:03:44] -rw------- 1 boinc boinc    1218560 Apr 28 01:03 result.tar.gz
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc       8524 Apr 28 01:03 runtime_log.err
[2026-04-28 01:03:44] -rw------- 1 boinc boinc        659 Apr 28 01:03 cd2fc748a76e.diag
[2026-04-28 01:03:44] -rw-r--r-- 1 boinc boinc      11320 Apr 28 01:03 stderr.txt
[2026-04-28 01:03:44] HITS file was successfully produced:
[2026-04-28 01:03:44] -rw------- 1 boinc boinc 277416606 Apr 28 01:02 shared/HITS.pool.root.1
[2026-04-28 01:03:44]  *** Contents of shared directory: ***
[2026-04-28 01:03:44] total 2461724
[2026-04-28 01:03:44] -rw-r--r-- 2 boinc boinc 2241440418 Apr 27 22:36 ATLAS.root_0
[2026-04-28 01:03:44] -rw-r--r-- 2 boinc boinc     697408 Apr 27 22:36 input.tar.gz
[2026-04-28 01:03:44] -rw-r--r-- 2 boinc boinc      15667 Apr 27 22:36 start_atlas.sh
[2026-04-28 01:03:44] -rw------- 1 boinc boinc  277416606 Apr 28 01:02 HITS.pool.root.1
[2026-04-28 01:03:44] -rw------- 1 boinc boinc    1218560 Apr 28 01:03 result.tar.gz
01:03:46 (2388309): run_atlas exited; CPU time 24782.167256
01:03:46 (2388309): called boinc_finish(0)

</stderr_txt>
]]>

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