Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:57:49 (31628): wrapper (7.7.26015): starting
01:57:49 (31628): wrapper: running run_atlas (--nthreads 8)
[2026-04-28 01:57:49] Arguments: --nthreads 8
[2026-04-28 01:57:49] Threads: 8
[2026-04-28 01:57:49] Checking for CVMFS
[2026-04-28 01:57:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-28 01:57:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-28 01:57:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-28 01:57:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-28 01:57:54] 2.11.2.0 19231 17708 105848 158946 3 54 18294171 25165824 96 130560 0 7942282 99.825 3086606 3161 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-28 01:57:54] CVMFS is ok
[2026-04-28 01:57:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-28 01:57:54] Checking for apptainer binary...
[2026-04-28 01:57:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-28 01:57:54] Running /usr/bin/apptainer --version
[2026-04-28 01:57:55] apptainer version 1.3.2-1.el7
[2026-04-28 01:57:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-28 01:58:22] cg-vwn362.simple-grid.lan
[2026-04-28 01:58:22] apptainer works
[2026-04-28 01:58:22] Set ATHENA_PROC_NUMBER=8
[2026-04-28 01:58:22] Set ATHENA_CORE_NUMBER=8
[2026-04-28 01:58:22] Starting ATLAS job with PandaID=7116223910
[2026-04-28 01:58:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-28 07:20:49]  *** The last 200 lines of the pilot log: ***
[2026-04-28 07:20:49] 2026-04-28 05:19:36,329 | INFO     | this job has now completed (state=finished)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,329 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,329 | INFO     | log transfer has been attempted: DONE
[2026-04-28 07:20:49] 2026-04-28 05:19:36,329 | INFO     | job 7116223910 has finished - writing final server update
[2026-04-28 07:20:49] 2026-04-28 05:19:36,330 | INFO     | total number of processed events: 400 (read)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,332 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7116223910/memory_monitor_summary.json (trf name=prmon)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,332 | INFO     | extracted standard info from prmon json
[2026-04-28 07:20:49] 2026-04-28 05:19:36,333 | INFO     | extracted standard memory fields from prmon json
[2026-04-28 07:20:49] 2026-04-28 05:19:36,333 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-28 07:20:49] 2026-04-28 05:19:36,333 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-28 07:20:49] 2026-04-28 05:19:36,340 | INFO     | fitting pss+swap vs Time
[2026-04-28 07:20:49] 2026-04-28 05:19:36,341 | INFO     | sum of square deviations: 8625843592.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,344 | INFO     | sum of deviations: 126580261249.99988
[2026-04-28 07:20:49] 2026-04-28 05:19:36,344 | INFO     | mean x (centered): 0.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,344 | INFO     | mean y: 2474299.9537953795
[2026-04-28 07:20:49] 2026-04-28 05:19:36,344 | INFO     | intersect: 2474299.9537953795
[2026-04-28 07:20:49] 2026-04-28 05:19:36,345 | INFO     | chi2: 8.457643973562666
[2026-04-28 07:20:49] 2026-04-28 05:19:36,345 | INFO     | sum of square deviations: 8205826414.5
[2026-04-28 07:20:49] 2026-04-28 05:19:36,349 | INFO     | sum of deviations: 144804031593.50024
[2026-04-28 07:20:49] 2026-04-28 05:19:36,349 | INFO     | mean x (centered): 0.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,349 | INFO     | mean y: 2480817.963087248
[2026-04-28 07:20:49] 2026-04-28 05:19:36,349 | INFO     | intersect: 2480817.963087248
[2026-04-28 07:20:49] 2026-04-28 05:19:36,350 | INFO     | chi2: 7.746992000339481
[2026-04-28 07:20:49] 2026-04-28 05:19:36,350 | INFO     | current chi2=7.746992000339481 (change=8.40248153557394 %)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,350 | INFO     | right removable region: 297
[2026-04-28 07:20:49] 2026-04-28 05:19:36,350 | INFO     | sum of square deviations: 8205826414.5
[2026-04-28 07:20:49] 2026-04-28 05:19:36,359 | INFO     | sum of deviations: 20023590624.000008
[2026-04-28 07:20:49] 2026-04-28 05:19:36,359 | INFO     | mean x (centered): 0.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,359 | INFO     | mean y: 2512968.302013423
[2026-04-28 07:20:49] 2026-04-28 05:19:36,359 | INFO     | intersect: 2512968.302013423
[2026-04-28 07:20:49] 2026-04-28 05:19:36,360 | INFO     | chi2: 3.5717945800693505
[2026-04-28 07:20:49] 2026-04-28 05:19:36,360 | INFO     | current chi2=3.5717945800693505 (change=57.768444838370506 %)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,360 | INFO     | sum of square deviations: 7799669962.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,363 | INFO     | sum of deviations: -56437141074.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,364 | INFO     | mean x (centered): 0.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,364 | INFO     | mean y: 2541614.9795221845
[2026-04-28 07:20:49] 2026-04-28 05:19:36,364 | INFO     | intersect: 2541614.9795221845
[2026-04-28 07:20:49] 2026-04-28 05:19:36,365 | INFO     | chi2: 1.0561496706516662
[2026-04-28 07:20:49] 2026-04-28 05:19:36,365 | INFO     | current chi2=1.0561496706516662 (change=70.43083954085736 %)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,365 | INFO     | sum of square deviations: 7407141672.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,368 | INFO     | sum of deviations: -70945994368.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,368 | INFO     | mean x (centered): 0.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,369 | INFO     | mean y: 2547230.736111111
[2026-04-28 07:20:49] 2026-04-28 05:19:36,369 | INFO     | intersect: 2547230.736111111
[2026-04-28 07:20:49] 2026-04-28 05:19:36,369 | INFO     | chi2: 0.9295275697536992
[2026-04-28 07:20:49] 2026-04-28 05:19:36,369 | INFO     | current chi2=0.9295275697536992 (change=11.989030003658339 %)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,370 | INFO     | left removable region: 15
[2026-04-28 07:20:49] 2026-04-28 05:19:36,370 | INFO     | sum of square deviations: 6953769450.5
[2026-04-28 07:20:49] 2026-04-28 05:19:36,373 | INFO     | sum of deviations: -50236231091.99999
[2026-04-28 07:20:49] 2026-04-28 05:19:36,373 | INFO     | mean x (centered): 0.0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,373 | INFO     | mean y: 2555453.212765957
[2026-04-28 07:20:49] 2026-04-28 05:19:36,373 | INFO     | intersect: 2555453.212765957
[2026-04-28 07:20:49] 2026-04-28 05:19:36,374 | INFO     | chi2: 0.14210275649269768
[2026-04-28 07:20:49] 2026-04-28 05:19:36,374 | INFO     | current memory leak: -7.22 B/s (using 282 data points, chi2=0.14)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | ..............................
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | . Timing measurements:
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | . get job = 0 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | . initial setup = 120 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | . payload setup = 246 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | . stage-in = 0 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,375 | INFO     | . payload execution = 18598 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,379 | INFO     | . stage-out = 5 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,379 | INFO     | . log creation = 0 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,379 | INFO     | ..............................
[2026-04-28 07:20:49] 2026-04-28 05:19:36,531 | INFO     | 
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | job summary report
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | --------------------------------------------------
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | PanDA job id: 7116223910
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | task id: 49863771
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | errors: (none)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | pilot state: finished 
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | transexitcode: 0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | exeerrorcode: 0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,532 | INFO     | exeerrordiag: 
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | exitcode: 0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | exitmsg: OK
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | cpuconsumptiontime: 77002 s
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | nevents: 400
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | neventsw: 0
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | pid: 7732
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | pgrp: 7732
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | corecount: 8
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | event service: False
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | sizes: {0: 2280601, 1: 2280912, 2: 2282514, 12: 2282514, 18849: 2315187, 18856: 2324185, 18858: 2324369, 18859: 2324563}
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | --------------------------------------------------
[2026-04-28 07:20:49] 2026-04-28 05:19:36,533 | INFO     | 
[2026-04-28 07:20:49] 2026-04-28 05:19:36,534 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-04-28 07:20:49] 2026-04-28 05:19:36,775 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,775 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,775 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,775 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-28 07:20:49] 2026-04-28 05:19:36,777 | INFO     | job 7116223910 has completed (purged errors)
[2026-04-28 07:20:49] 2026-04-28 05:19:36,778 | INFO     | overall cleanup function is called
[2026-04-28 07:20:49] 2026-04-28 05:19:37,786 | INFO     | --- collectZombieJob: --- 10, [7732]
[2026-04-28 07:20:49] 2026-04-28 05:19:37,786 | INFO     | zombie collector waiting for pid 7732
[2026-04-28 07:20:49] 2026-04-28 05:19:37,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-28 07:20:49] 2026-04-28 05:19:37,786 | INFO     | collected zombie processes
[2026-04-28 07:20:49] 2026-04-28 05:19:37,786 | INFO     | will attempt to kill all subprocesses of pid=7732
[2026-04-28 07:20:49] 2026-04-28 05:19:37,857 | INFO     | process IDs to be killed: [7732] (in reverse order)
[2026-04-28 07:20:49] 2026-04-28 05:19:39,097 | WARNING  | found no corresponding commands to process id(s)
[2026-04-28 07:20:49] 2026-04-28 05:19:39,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-28 07:20:49] 2026-04-28 05:19:39,100 | INFO     | did not find any defunct processes belonging to 7732
[2026-04-28 07:20:49] 2026-04-28 05:19:39,101 | INFO     | did not find any defunct processes belonging to 7732
[2026-04-28 07:20:49] 2026-04-28 05:19:39,102 | INFO     | Ready for new job
[2026-04-28 07:20:49] 2026-04-28 05:19:39,104 | INFO     | ***************************************
[2026-04-28 07:20:49] 2026-04-28 05:19:39,104 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-04-28 07:20:49] 2026-04-28 05:19:39,104 | INFO     | ***************************************
[2026-04-28 07:20:49] 2026-04-28 05:19:39,104 | INFO     | 
[2026-04-28 07:20:49] 2026-04-28 05:19:39,105 | INFO     | pilot is running in a VM
[2026-04-28 07:20:49] 2026-04-28 05:19:39,105 | INFO     | architecture information:
[2026-04-28 07:20:49] 2026-04-28 05:19:39,114 | INFO     | executing command: cat /etc/os-release
[2026-04-28 07:20:49] 2026-04-28 05:19:39,437 | INFO     | cat /etc/os-release:
[2026-04-28 07:20:49] NAME="CentOS Linux"
[2026-04-28 07:20:49] VERSION="7 (Core)"
[2026-04-28 07:20:49] ID="centos"
[2026-04-28 07:20:49] ID_LIKE="rhel fedora"
[2026-04-28 07:20:49] VERSION_ID="7"
[2026-04-28 07:20:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-28 07:20:49] ANSI_COLOR="0;31"
[2026-04-28 07:20:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-28 07:20:49] HOME_URL="https://www.centos.org/"
[2026-04-28 07:20:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-28 07:20:49] 
[2026-04-28 07:20:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-28 07:20:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-28 07:20:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-28 07:20:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-28 07:20:49] 
[2026-04-28 07:20:49] 2026-04-28 05:19:39,438 | INFO     | ***************************************
[2026-04-28 07:20:49] 2026-04-28 05:19:39,941 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-04-28 07:20:49] 2026-04-28 05:19:40,258 | INFO     | sufficient remaining disk space (495268659200 B)
[2026-04-28 07:20:49] 2026-04-28 05:19:40,259 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-28 07:20:49] 2026-04-28 05:19:40,259 | INFO     | current server update state: UPDATING_FINAL
[2026-04-28 07:20:49] 2026-04-28 05:19:40,259 | INFO     | update_server=False
[2026-04-28 07:20:49] 2026-04-28 05:19:40,259 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-28 07:20:49] 2026-04-28 05:19:40,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-28 07:20:49] 2026-04-28 05:19:40,273 | INFO     | all payload control threads have been joined
[2026-04-28 07:20:49] 2026-04-28 05:19:41,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-28 07:20:49] 2026-04-28 05:19:41,080 | INFO     | aborting loop
[2026-04-28 07:20:49] 2026-04-28 05:19:41,265 | INFO     | [job] retrieve thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,279 | INFO     | [payload] control thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,356 | INFO     | all data control threads have been joined
[2026-04-28 07:20:49] 2026-04-28 05:19:41,361 | INFO     | [data] copytool_in thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,377 | INFO     | [payload] validate_pre thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,460 | INFO     | [payload] execute_payloads thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,465 | INFO     | [payload] failed_post thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-28 07:20:49] 2026-04-28 05:19:41,563 | INFO     | [job] validate thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,591 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:41,594 | INFO     | all job control threads have been joined
[2026-04-28 07:20:49] 2026-04-28 05:19:41,954 | INFO     | [job] create_data_payload thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:42,086 | INFO     | [job] job monitor thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:42,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-28 07:20:49] 2026-04-28 05:19:42,267 | INFO     | [data] copytool_out thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:42,362 | INFO     | [data] control thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:42,552 | INFO     | [job] queue monitor thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:42,592 | INFO     | [payload] validate_post thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:42,600 | INFO     | [job] control thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:19:46,271 | INFO     | [data] queue_monitor thread has finished
[2026-04-28 07:20:49] 2026-04-28 05:20:08,531 | INFO     | PID=3227 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-28 07:20:49] 2026-04-28 05:20:08,531 | INFO     | .. there are 2 such processes running
[2026-04-28 07:20:49] 2026-04-28 05:20:08,531 | INFO     | found 0 job(s) in 20 queues
[2026-04-28 07:20:49] 2026-04-28 05:20:08,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-28 07:20:49] 2026-04-28 05:20:08,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-28 07:20:49] 2026-04-28 05:20:37,510 | INFO     | [monitor] cgroup control has ended
[2026-04-28 07:20:49] 2026-04-28 05:20:37,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140212176033600)>', '<ExcThread(monitor, started 140211598116608)>']
[2026-04-28 07:20:49] 2026-04-28 05:20:38,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-28 07:20:49] 2026-04-28 05:20:38,712 | INFO     | [monitor] control thread has ended
[2026-04-28 07:20:49] 2026-04-28 05:20:42,964 | INFO     | all workflow threads have been joined
[2026-04-28 07:20:49] 2026-04-28 05:20:42,964 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-28 07:20:49] 2026-04-28 05:20:42,964 | INFO     | traces error code: 0
[2026-04-28 07:20:49] 2026-04-28 05:20:42,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-28 07:20:49] 2026-04-28 05:20:43,414 [wrapper] ==== pilot stdout END ====
[2026-04-28 07:20:49] 2026-04-28 05:20:43,547 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-28 07:20:49] 2026-04-28 05:20:43,661 [wrapper] pilotpid: 3227
[2026-04-28 07:20:49] 2026-04-28 05:20:43,775 [wrapper] Pilot exit status: 0
[2026-04-28 07:20:49] 2026-04-28 05:20:44,329 [wrapper] pandaids: 7116223910
[2026-04-28 07:20:49] 2026-04-28 05:20:45,473 [wrapper] cleanup supervisor_pilot 26562 3228
[2026-04-28 07:20:49] 2026-04-28 05:20:45,611 [wrapper] Test setup, not cleaning
[2026-04-28 07:20:49] 2026-04-28 05:20:45,727 [wrapper] apfmon messages muted
[2026-04-28 07:20:49] 2026-04-28 05:20:45,862 [wrapper] ==== wrapper stdout END ====
[2026-04-28 07:20:49] 2026-04-28 05:20:45,985 [wrapper] ==== wrapper stderr END ====
[2026-04-28 07:20:49]  *** Error codes and diagnostics ***
[2026-04-28 07:20:49]     "exeErrorCode": 0,
[2026-04-28 07:20:49]     "pilotErrorCode": 0,
[2026-04-28 07:20:49]  *** Listing of results directory ***
[2026-04-28 07:20:49] total 467660
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc    683926 Apr 27 06:24 pilot3.tar.gz
[2026-04-28 07:20:49] -rwx------. 1 boinc boinc     36322 Apr 27 06:26 runpilot2-wrapper.sh
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc      5631 Apr 27 06:26 queuedata.json
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc       100 Apr 28 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-28 07:20:49] -rwxr-xr-x. 1 boinc boinc      7986 Apr 28 01:57 run_atlas
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc       105 Apr 28 01:57 job.xml
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc      6306 Apr 28 01:57 init_data.xml
[2026-04-28 07:20:49] -rw-r--r--. 2 boinc boinc 263621036 Apr 28 01:57 EVNT.49863768._000021.pool.root.1
[2026-04-28 07:20:49] -rw-r--r--. 2 boinc boinc     15667 Apr 28 01:57 start_atlas.sh
[2026-04-28 07:20:49] drwxrwx--x. 2 boinc boinc        68 Apr 28 01:57 shared
[2026-04-28 07:20:49] -rw-r--r--. 2 boinc boinc    697416 Apr 28 01:57 input.tar.gz
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc         0 Apr 28 01:57 boinc_lockfile
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc      2572 Apr 28 01:58 pandaJob.out
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc       415 Apr 28 02:04 workernode_map.json
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc    997422 Apr 28 02:05 agis_schedconf.cvmfs.json
[2026-04-28 07:20:49] drwx------. 5 boinc boinc      4096 Apr 28 02:05 pilot3
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc 206792951 Apr 28 07:17 HITS.49863771._000510.pool.root.1
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc       489 Apr 28 07:18 boinc_task_state.xml
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc        95 Apr 28 07:19 pilot_heartbeat.json
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc      1020 Apr 28 07:19 memory_monitor_summary.json
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc   1512704 Apr 28 07:19 agis_ddmendpoints.agis.ALL.json
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc    430951 Apr 28 07:19 log.49863771._000510.job.log.tgz.1
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc      6344 Apr 28 07:19 heartbeat_new.json
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc      6235 Apr 28 07:19 heartbeat.json
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc      4882 Apr 28 07:20 pilotlog.txt
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc   1737783 Apr 28 07:20 log.49863771._000510.job.log.1
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc      8192 Apr 28 07:20 boinc_mmap_file
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc        28 Apr 28 07:20 wrapper_checkpoint.txt
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc       357 Apr 28 07:20 output.list
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc       410 Apr 28 07:20 runtime_log
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc   2191360 Apr 28 07:20 result.tar.gz
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc      8439 Apr 28 07:20 runtime_log.err
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc       656 Apr 28 07:20 e5852d9ed582.diag
[2026-04-28 07:20:49] -rw-r--r--. 1 boinc boinc     20630 Apr 28 07:20 stderr.txt
[2026-04-28 07:20:49] HITS file was successfully produced:
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc 206792951 Apr 28 07:17 shared/HITS.pool.root.1
[2026-04-28 07:20:49]  *** Contents of shared directory: ***
[2026-04-28 07:20:49] total 462232
[2026-04-28 07:20:49] -rw-r--r--. 2 boinc boinc 263621036 Apr 28 01:57 ATLAS.root_0
[2026-04-28 07:20:49] -rw-r--r--. 2 boinc boinc     15667 Apr 28 01:57 start_atlas.sh
[2026-04-28 07:20:49] -rw-r--r--. 2 boinc boinc    697416 Apr 28 01:57 input.tar.gz
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc 206792951 Apr 28 07:17 HITS.pool.root.1
[2026-04-28 07:20:49] -rw-------. 1 boinc boinc   2191360 Apr 28 07:20 result.tar.gz
07:20:50 (31628): run_atlas exited; CPU time 77183.135815
07:20:50 (31628): called boinc_finish(0)

</stderr_txt>
]]>

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